ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast79d04 |
|---|---|
| Clone Library Name | barley_pub |
>MUC1_YEAST (P08640) Mucin-like protein 1 precursor| Length = 1367 Score = 31.2 bits (69), Expect = 1.6 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%) Frame = +2 Query: 131 PRATTTTLSS---PTPEAASATIASEPMISSLGTIFLLLPRASTRCTPHTQTWDCSECRV 301 P ++TT SS PTP +++ +S P+ SS ++ TP + T + S V Sbjct: 317 PSSSTTESSSAPVPTPSSSTTESSSAPVTSSTTE-----SSSAPVPTPSSSTTESSSAPV 371 Query: 302 CSQPFPRMAPSLPSSTMSSRLYGLPIPKACASSTRSGA 415 S + + SST S P+P +S+T S + Sbjct: 372 TSSTTESSSAPVTSSTTESS--SAPVPTPSSSTTESSS 407 Score = 28.9 bits (63), Expect = 7.7 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 4/97 (4%) Frame = +2 Query: 137 ATTTTLSSPTPEAASATIASE----PMISSLGTIFLLLPRASTRCTPHTQTWDCSECRVC 304 +TT + S+P P +S+T S P SS T P TP + T + S V Sbjct: 629 STTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVP----TPSSSTTESSSAPVT 684 Query: 305 SQPFPRMAPSLPSSTMSSRLYGLPIPKACASSTRSGA 415 S + + SST S P+P +S+T S + Sbjct: 685 SSTTESSSAPVTSSTTESS--SAPVPTPSSSTTESSS 719
>HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)| (E3 ubiquitin protein ligase URE-B1) (E3Histone) Length = 4377 Score = 30.4 bits (67), Expect = 2.7 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +2 Query: 140 TTTTLSSPTPEAASATIASEPMISSLGTIFLLLPRASTRCTPHT 271 TT T +PTP AA+ + S P + + I + AST T T Sbjct: 3498 TTATAPTPTPPAATTPVTSAPALVAATAISTITVAASTTVTTPT 3541
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.4 bits (67), Expect = 2.7 Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 12/105 (11%) Frame = +2 Query: 131 PRATTTTLSSPT--PEAASATIASEPMISSLGTIFLLLPRA--STRCTPHTQTWDCSECR 298 P TTTT PT P + T S P + P + +T TP + T Sbjct: 1667 PPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPT 1726 Query: 299 VCSQPFPRMAPS--------LPSSTMSSRLYGLPIPKACASSTRS 409 + P P PS LP +T SS L P+P + T S Sbjct: 1727 TMTTPSPTTTPSPPTTTMTTLPPTTTSSPLTTTPLPPSITPPTFS 1771
>MUC1_XENLA (Q05049) Integumentary mucin C.1 (FIM-C.1) (Fragment)| Length = 662 Score = 30.4 bits (67), Expect = 2.7 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Frame = +2 Query: 122 KSDPRATTTTLSSPTPEAA--SATIASEPMISSLGTIFLLLPRASTRCTPHTQTWDCSEC 295 K+ P TTTT ++PT + T + P ++ T P +T TP T T + Sbjct: 240 KATPTTTTTTKATPTTTTTTKATTTTTTPTTTTTTTKATTTPTTTTTTTPTTTTTKATTT 299 Query: 296 RVCSQPFPRMAPS 334 + +M PS Sbjct: 300 TTTTSGECKMEPS 312
>MTRD_METMA (P80653) Tetrahydromethanopterin S-methyltransferase subunit D (EC| 2.1.1.86) (N5-methyltetrahydromethanopterin--coenzyme M methyltransferase subunit D) Length = 250 Score = 30.4 bits (67), Expect = 2.7 Identities = 20/66 (30%), Positives = 29/66 (43%) Frame = +1 Query: 163 DAGSRIGYHRVRTDDLVIGNNLSAPTKSFDKMHSPHTDVGLFRVSGVFPTISKDGAKLAF 342 + G +G RV V GN+L A F +G+F V+ V P+ + G F Sbjct: 163 EVGVSVGLERVGVTSAVTGNSLVAVAAIFA--------IGIFLVNAVIPSYNIGGTIEGF 214 Query: 343 VDNEFK 360 D +FK Sbjct: 215 HDPKFK 220
>TAX_HTLV2 (P03410) Protein Tax-2 (Trans-activating transcriptional regulatory| protein of HTLV-2) Length = 331 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +2 Query: 257 CTPHTQTWDCSECRVCSQPFPRMAPSLPS 343 C H TWD + RV S P + P LPS Sbjct: 49 CPEHQLTWDPIDGRVVSSPLQYLIPRLPS 77
>NIFB_RHILT (P24427) FeMo cofactor biosynthesis protein nifB| Length = 490 Score = 29.6 bits (65), Expect = 4.5 Identities = 38/155 (24%), Positives = 57/155 (36%), Gaps = 31/155 (20%) Frame = -3 Query: 483 DPRTRTACPVGVLVPRRREDGVGAPLLVDDAQALGIGKPYSLELIVDEGKLGAILG---- 316 DPR T + RR +G+ A ++ + Q LG LE++ + G L + Sbjct: 185 DPRIGTKIYPWIFYDGRRYNGIDASRILHERQMLG------LEMLTERGILAKVNSVMIP 238 Query: 315 ----------NGWEHTRH----------SEQSHVCVWGVHLVEALGRSRKIVPNDEIIGS 196 N W R SE+SH +G++ S I D + G Sbjct: 239 GVNDEHLIEVNKWVKDRGAFMHNVMPLISERSHGTFYGLNDQRCPATSELIALRDRLEGG 298 Query: 195 DAMV-------ADAASGVGDERVVVVALGSDFLAD 112 ++ ADA +GD+R LG F AD Sbjct: 299 TQVMRHCHQCRADAVGLLGDDRAREFTLG-QFPAD 332
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 29.6 bits (65), Expect = 4.5 Identities = 25/88 (28%), Positives = 37/88 (42%) Frame = +2 Query: 125 SDPRATTTTLSSPTPEAASATIASEPMISSLGTIFLLLPRASTRCTPHTQTWDCSECRVC 304 S PRA+ + ++ T + +AT+ I I + P S PH+ T S + Sbjct: 3035 SFPRASHPSSTASTALSTNATVMLAAGIPVPQFISSIHPEQSVIMPPHSITQTVSLSHLS 3094 Query: 305 SQPFPRMAPSLPSSTMSSRLYGLPIPKA 388 P+LPS T S R L P+A Sbjct: 3095 QGEVRMNTPTLPSITYSIRPEALHSPRA 3122
>YRM5_CAEEL (Q09601) Hypothetical protein R06F6.5| Length = 378 Score = 29.3 bits (64), Expect = 5.9 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Frame = +1 Query: 73 EIFDVSSPDQPMQISQKIRPKGDHYNPFVADAGSRIGYHRVRTD-DLVIGNN--LSAPTK 243 +IF VS+P P + K H++P + +G + T +L G N SAPTK Sbjct: 64 DIFAVSAPAVPQHLKDTPGSKSVHWSPSLVQSGEKSAAQTQNTPANLSFGGNSSFSAPTK 123
>IDH1_KLULA (O94229) Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial| precursor (EC 1.1.1.41) (Isocitric dehydrogenase) (NAD(+)-specific ICDH) Length = 361 Score = 29.3 bits (64), Expect = 5.9 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -3 Query: 408 LLVDDAQALGIGKPYSLELIVDEGKLGAILGN 313 ++VD+A + KP+ +++V G+ILGN Sbjct: 226 IIVDNASMQAVAKPHQFDVLVTPNLYGSILGN 257
>IDH1_YEAST (P28834) Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial| precursor (EC 1.1.1.41) (Isocitric dehydrogenase) (NAD(+)-specific ICDH) Length = 360 Score = 29.3 bits (64), Expect = 5.9 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -3 Query: 408 LLVDDAQALGIGKPYSLELIVDEGKLGAILGN 313 ++VD+A + KP+ +++V G ILGN Sbjct: 225 IIVDNASMQAVAKPHQFDVLVTPSMYGTILGN 256
>YNPI_CAEEL (Q9GQ60) Hypothetical protein R08C7.12| Length = 278 Score = 28.9 bits (63), Expect = 7.7 Identities = 23/76 (30%), Positives = 40/76 (52%) Frame = -1 Query: 476 AHVQRVLSGFWFHAVEKTALEXRFS*TTRKPWVSASHTALNSLSTKASLAPSLEMVGNTP 297 AH +R LSG W + + E R S R+P + +HT+++SLS S++P+ + + Sbjct: 184 AHFRRSLSGKWPKRCKVNSEEARNSPLRRRPSFN-THTSVSSLSVH-SVSPTPPVTSSAQ 241 Query: 296 DTLNNPTSVCGECILS 249 + N + C + LS Sbjct: 242 TIIVN--NHCSDTTLS 255
>C79A1_SORBI (Q43135) Cytochrome P450 79A1 (EC 1.14.13.41) (Tyrosine| N-monooxygenase) (Cytochrome P450Tyr) Length = 557 Score = 28.9 bits (63), Expect = 7.7 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 8/65 (12%) Frame = +2 Query: 170 EAASATIASEPMISSLGTIFLL--------LPRASTRCTPHTQTWDCSECRVCSQPFPRM 325 EAA+AT+ + P++SS + LL L RA R P T CS S P Sbjct: 6 EAAAATVLAAPLLSSSAILKLLLFVVTLSYLARALRR--PRKSTTKCSSTTCASPPAGVG 63 Query: 326 APSLP 340 P LP Sbjct: 64 NPPLP 68
>VGLM_DUGBV (Q02004) M polyprotein precursor [Contains: Glycoprotein G2;| Nonstructural protein NS-M; Glycoprotein G1] Length = 1551 Score = 28.9 bits (63), Expect = 7.7 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -1 Query: 395 TRKPWVSASHTALNSLSTKASLAPSLEMVGNTPDTLNNPTSV 270 T + ++ +HT +NS S + A S V TP T T+V Sbjct: 17 TTQNQITGNHTTINSSSPSTTEASSTPTVSRTPQTTTTSTAV 58 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,885,748 Number of Sequences: 219361 Number of extensions: 1486073 Number of successful extensions: 5561 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5312 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5556 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
