ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast79d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CALX_PEA (O82709) Calnexin homolog precursor 27 7.2
2RBP1A_XENLA (Q9PT60) RalA-binding protein 1-A (RalBP1-A) (Ral-in... 28 9.7

>CALX_PEA (O82709) Calnexin homolog precursor|
          Length = 551

 Score = 26.6 bits (57), Expect(2) = 7.2
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 471 WMXRRRPVEPGA-EPADLDLDLPRVRVQEELHQPGVRLRYHP 349
           W  R +  +P A +P D D D PR  + EE  +P   L + P
Sbjct: 244 WDERAKIPDPEAVKPEDWDEDAPREIIDEEAEKPEPWLDHEP 285



 Score = 20.8 bits (42), Expect(2) = 7.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 233 PGCGGARMPSGSHP 192
           PGCG  + P+ S+P
Sbjct: 319 PGCGEWKRPTKSNP 332



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>RBP1A_XENLA (Q9PT60) RalA-binding protein 1-A (RalBP1-A) (Ral-interacting|
           protein 1-A) (XRLIP2) (XRLIP76-A) (RIP1-A)
          Length = 654

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 480 ISRWMXRRRPVEPGAEPADLDLDLPRVR 397
           + +W  +++  +P  EP  L +D+PR+R
Sbjct: 154 VKQWKEKKKKKKPTPEPESLPVDIPRLR 181


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,320,113
Number of Sequences: 219361
Number of extensions: 278409
Number of successful extensions: 967
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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