ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast79c11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468738.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1496 Score = 502 bits (253), Expect = e-139 Identities = 412/464 (88%), Gaps = 1/464 (0%) Strand = Plus / Plus Query: 1 catggggaaccgcacggagggcatcgcggacgacaccggcgccagcggcctcccctgggc 60 |||||| |||||| | |||||| |||| |||| |||||||| ||| |||||||||||| Sbjct: 491 catgggcaaccgcgccgagggcctcgccgacggcaccggcgtgagccccctcccctgggc 550 Query: 61 gcagtggttgcgcggctggacggccgaggagaaccgccacggcgacctcctcaaccgcta 120 || ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 551 gcgctggctccgcggctggaccgccgaggagaaccgccacggcgacctcctcaaccgcta 610 Query: 121 cctctacctctccggccgcgtcgacatgcgccaggtcgagaccaccgtccaccacctcct 180 |||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| Sbjct: 611 cctctacctctccggccgcgtcgacatgcgccaggtcgaggccaccgtgcaccgcctcct 670 Query: 181 ccgcaacggcatggaaatgctggtgcccaagagcccataccacagcgtgatctacggcgc 240 ||||||||||||||| ||||||| ||| |||||| |||||| || ||||||||||||| Sbjct: 671 ccgcaacggcatggagatgctggcgccggcgagcccgtaccacggcctgatctacggcgc 730 Query: 241 gttccaggagcgggcgaccttcgtctcccacgtgaacacggcgaggctcgccgggcagca 300 |||||||||||| || |||||| ||||||||| |||||||||||||||| |||||||| Sbjct: 731 gttccaggagcgcgccaccttcatctcccacggccacacggcgaggctcgcggggcagca 790 Query: 301 cggcgaccaggcgctcgccaagatctgcggcgtgattgccgccgacgagaagaggcacga 360 |||||||| ||||||||||||||||||||||||||| ||||||||||||| | ||||||| Sbjct: 791 cggcgaccgggcgctcgccaagatctgcggcgtgatcgccgccgacgagaggcggcacga 850 Query: 361 ggcgggctacaccagggtgtccgccaagctcttcgaggtggaccccgacngcatagtgcg 420 |||||||||||| | || ||||| || ||| |||||| | ||||| ||| |||| | ||| Sbjct: 851 ggcgggctacacgatggcgtccggcaggctgttcgagctcgacccggacggcatggcgcg 910 Query: 421 cgcgctggcgcacgtcatgcgc-ggaaggtcaccatgccggggc 463 |||||||||| ||||||||||| ||||||| ||||||||||||| Sbjct: 911 cgcgctggcggacgtcatgcgcgggaaggtgaccatgccggggc 954
>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19 map E30331S, complete sequence Length = 164820 Score = 502 bits (253), Expect = e-139 Identities = 412/464 (88%), Gaps = 1/464 (0%) Strand = Plus / Plus Query: 1 catggggaaccgcacggagggcatcgcggacgacaccggcgccagcggcctcccctgggc 60 |||||| |||||| | |||||| |||| |||| |||||||| ||| |||||||||||| Sbjct: 126978 catgggcaaccgcgccgagggcctcgccgacggcaccggcgtgagccccctcccctgggc 127037 Query: 61 gcagtggttgcgcggctggacggccgaggagaaccgccacggcgacctcctcaaccgcta 120 || ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 127038 gcgctggctccgcggctggaccgccgaggagaaccgccacggcgacctcctcaaccgcta 127097 Query: 121 cctctacctctccggccgcgtcgacatgcgccaggtcgagaccaccgtccaccacctcct 180 |||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| Sbjct: 127098 cctctacctctccggccgcgtcgacatgcgccaggtcgaggccaccgtgcaccgcctcct 127157 Query: 181 ccgcaacggcatggaaatgctggtgcccaagagcccataccacagcgtgatctacggcgc 240 ||||||||||||||| ||||||| ||| |||||| |||||| || ||||||||||||| Sbjct: 127158 ccgcaacggcatggagatgctggcgccggcgagcccgtaccacggcctgatctacggcgc 127217 Query: 241 gttccaggagcgggcgaccttcgtctcccacgtgaacacggcgaggctcgccgggcagca 300 |||||||||||| || |||||| ||||||||| |||||||||||||||| |||||||| Sbjct: 127218 gttccaggagcgcgccaccttcatctcccacggccacacggcgaggctcgcggggcagca 127277 Query: 301 cggcgaccaggcgctcgccaagatctgcggcgtgattgccgccgacgagaagaggcacga 360 |||||||| ||||||||||||||||||||||||||| ||||||||||||| | ||||||| Sbjct: 127278 cggcgaccgggcgctcgccaagatctgcggcgtgatcgccgccgacgagaggcggcacga 127337 Query: 361 ggcgggctacaccagggtgtccgccaagctcttcgaggtggaccccgacngcatagtgcg 420 |||||||||||| | || ||||| || ||| |||||| | ||||| ||| |||| | ||| Sbjct: 127338 ggcgggctacacgatggcgtccggcaggctgttcgagctcgacccggacggcatggcgcg 127397 Query: 421 cgcgctggcgcacgtcatgcgc-ggaaggtcaccatgccggggc 463 |||||||||| ||||||||||| ||||||| ||||||||||||| Sbjct: 127398 cgcgctggcggacgtcatgcgcgggaaggtgaccatgccggggc 127441
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 502 bits (253), Expect = e-139 Identities = 412/464 (88%), Gaps = 1/464 (0%) Strand = Plus / Minus Query: 1 catggggaaccgcacggagggcatcgcggacgacaccggcgccagcggcctcccctgggc 60 |||||| |||||| | |||||| |||| |||| |||||||| ||| |||||||||||| Sbjct: 17436765 catgggcaaccgcgccgagggcctcgccgacggcaccggcgtgagccccctcccctgggc 17436706 Query: 61 gcagtggttgcgcggctggacggccgaggagaaccgccacggcgacctcctcaaccgcta 120 || ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 17436705 gcgctggctccgcggctggaccgccgaggagaaccgccacggcgacctcctcaaccgcta 17436646 Query: 121 cctctacctctccggccgcgtcgacatgcgccaggtcgagaccaccgtccaccacctcct 180 |||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| Sbjct: 17436645 cctctacctctccggccgcgtcgacatgcgccaggtcgaggccaccgtgcaccgcctcct 17436586 Query: 181 ccgcaacggcatggaaatgctggtgcccaagagcccataccacagcgtgatctacggcgc 240 ||||||||||||||| ||||||| ||| |||||| |||||| || ||||||||||||| Sbjct: 17436585 ccgcaacggcatggagatgctggcgccggcgagcccgtaccacggcctgatctacggcgc 17436526 Query: 241 gttccaggagcgggcgaccttcgtctcccacgtgaacacggcgaggctcgccgggcagca 300 |||||||||||| || |||||| ||||||||| |||||||||||||||| |||||||| Sbjct: 17436525 gttccaggagcgcgccaccttcatctcccacggccacacggcgaggctcgcggggcagca 17436466 Query: 301 cggcgaccaggcgctcgccaagatctgcggcgtgattgccgccgacgagaagaggcacga 360 |||||||| ||||||||||||||||||||||||||| ||||||||||||| | ||||||| Sbjct: 17436465 cggcgaccgggcgctcgccaagatctgcggcgtgatcgccgccgacgagaggcggcacga 17436406 Query: 361 ggcgggctacaccagggtgtccgccaagctcttcgaggtggaccccgacngcatagtgcg 420 |||||||||||| | || ||||| || ||| |||||| | ||||| ||| |||| | ||| Sbjct: 17436405 ggcgggctacacgatggcgtccggcaggctgttcgagctcgacccggacggcatggcgcg 17436346 Query: 421 cgcgctggcgcacgtcatgcgc-ggaaggtcaccatgccggggc 463 |||||||||| ||||||||||| ||||||| ||||||||||||| Sbjct: 17436345 cgcgctggcggacgtcatgcgcgggaaggtgaccatgccggggc 17436302 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 83 gccgaggagaaccgccacggcgacctcctcaaccgctacctctacctctccggccgcgtc 142 ||||||||||||| ||||| |||| | |||||||| ||| | ||||||||||||||| | Sbjct: 30109965 gccgaggagaaccaccacgacgacgtgctcaaccggtacatgtacctctccggccgcctt 30109906 Query: 143 gacatgcgccaggt 156 |||||||||||||| Sbjct: 30109905 gacatgcgccaggt 30109892 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 103 cgacctcctcaaccgctacctctacctctccggccgc 139 |||||||| | ||||||||||||||||| ||| |||| Sbjct: 591656 cgacctccaccaccgctacctctacctcgccgaccgc 591692
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 502 bits (253), Expect = e-139 Identities = 412/464 (88%), Gaps = 1/464 (0%) Strand = Plus / Minus Query: 1 catggggaaccgcacggagggcatcgcggacgacaccggcgccagcggcctcccctgggc 60 |||||| |||||| | |||||| |||| |||| |||||||| ||| |||||||||||| Sbjct: 17430306 catgggcaaccgcgccgagggcctcgccgacggcaccggcgtgagccccctcccctgggc 17430247 Query: 61 gcagtggttgcgcggctggacggccgaggagaaccgccacggcgacctcctcaaccgcta 120 || ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 17430246 gcgctggctccgcggctggaccgccgaggagaaccgccacggcgacctcctcaaccgcta 17430187 Query: 121 cctctacctctccggccgcgtcgacatgcgccaggtcgagaccaccgtccaccacctcct 180 |||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| Sbjct: 17430186 cctctacctctccggccgcgtcgacatgcgccaggtcgaggccaccgtgcaccgcctcct 17430127 Query: 181 ccgcaacggcatggaaatgctggtgcccaagagcccataccacagcgtgatctacggcgc 240 ||||||||||||||| ||||||| ||| |||||| |||||| || ||||||||||||| Sbjct: 17430126 ccgcaacggcatggagatgctggcgccggcgagcccgtaccacggcctgatctacggcgc 17430067 Query: 241 gttccaggagcgggcgaccttcgtctcccacgtgaacacggcgaggctcgccgggcagca 300 |||||||||||| || |||||| ||||||||| |||||||||||||||| |||||||| Sbjct: 17430066 gttccaggagcgcgccaccttcatctcccacggccacacggcgaggctcgcggggcagca 17430007 Query: 301 cggcgaccaggcgctcgccaagatctgcggcgtgattgccgccgacgagaagaggcacga 360 |||||||| ||||||||||||||||||||||||||| ||||||||||||| | ||||||| Sbjct: 17430006 cggcgaccgggcgctcgccaagatctgcggcgtgatcgccgccgacgagaggcggcacga 17429947 Query: 361 ggcgggctacaccagggtgtccgccaagctcttcgaggtggaccccgacngcatagtgcg 420 |||||||||||| | || ||||| || ||| |||||| | ||||| ||| |||| | ||| Sbjct: 17429946 ggcgggctacacgatggcgtccggcaggctgttcgagctcgacccggacggcatggcgcg 17429887 Query: 421 cgcgctggcgcacgtcatgcgc-ggaaggtcaccatgccggggc 463 |||||||||| ||||||||||| ||||||| ||||||||||||| Sbjct: 17429886 cgcgctggcggacgtcatgcgcgggaaggtgaccatgccggggc 17429843 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 83 gccgaggagaaccgccacggcgacctcctcaaccgctacctctacctctccggccgcgtc 142 ||||||||||||| ||||| |||| | |||||||| ||| | ||||||||||||||| | Sbjct: 30201387 gccgaggagaaccaccacgacgacgtgctcaaccggtacatgtacctctccggccgcctt 30201328 Query: 143 gacatgcgccaggt 156 |||||||||||||| Sbjct: 30201327 gacatgcgccaggt 30201314 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 103 cgacctcctcaaccgctacctctacctctccggccgc 139 |||||||| | ||||||||||||||||| ||| |||| Sbjct: 591654 cgacctccaccaccgctacctctacctcgccgaccgc 591690
>dbj|AK070282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047A21, full insert sequence Length = 1506 Score = 494 bits (249), Expect = e-136 Identities = 411/464 (88%), Gaps = 1/464 (0%) Strand = Plus / Plus Query: 1 catggggaaccgcacggagggcatcgcggacgacaccggcgccagcggcctcccctgggc 60 |||||| |||||| | |||||| |||| |||| |||||||| ||| |||||||||||| Sbjct: 501 catgggcaaccgcgccgagggcctcgccgacggcaccggcgtgagccccctcccctgggc 560 Query: 61 gcagtggttgcgcggctggacggccgaggagaaccgccacggcgacctcctcaaccgcta 120 || ||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 561 gcgctggctccgcggctggaccgccgaggagaacagccacggcgacctcctcaaccgcta 620 Query: 121 cctctacctctccggccgcgtcgacatgcgccaggtcgagaccaccgtccaccacctcct 180 |||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| Sbjct: 621 cctctacctctccggccgcgtcgacatgcgccaggtcgaggccaccgtgcaccgcctcct 680 Query: 181 ccgcaacggcatggaaatgctggtgcccaagagcccataccacagcgtgatctacggcgc 240 ||||||||||||||| ||||||| ||| |||||| |||||| || ||||||||||||| Sbjct: 681 ccgcaacggcatggagatgctggcgccggcgagcccgtaccacggcctgatctacggcgc 740 Query: 241 gttccaggagcgggcgaccttcgtctcccacgtgaacacggcgaggctcgccgggcagca 300 |||||||||||| || |||||| ||||||||| |||||||||||||||| |||||||| Sbjct: 741 gttccaggagcgcgccaccttcatctcccacggccacacggcgaggctcgcggggcagca 800 Query: 301 cggcgaccaggcgctcgccaagatctgcggcgtgattgccgccgacgagaagaggcacga 360 |||||||| ||||||||||||||||||||||||||| ||||||||||||| | ||||||| Sbjct: 801 cggcgaccgggcgctcgccaagatctgcggcgtgatcgccgccgacgagaggcggcacga 860 Query: 361 ggcgggctacaccagggtgtccgccaagctcttcgaggtggaccccgacngcatagtgcg 420 |||||||||||| | || ||||| || ||| |||||| | ||||| ||| |||| | ||| Sbjct: 861 ggcgggctacacgatggcgtccggcaggctgttcgagctcgacccggacggcatggcgcg 920 Query: 421 cgcgctggcgcacgtcatgcgc-ggaaggtcaccatgccggggc 463 |||||||||| ||||||||||| ||||||| ||||||||||||| Sbjct: 921 cgcgctggcggacgtcatgcgcgggaaggtgaccatgccggggc 964
>ref|XM_480561.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1215 Score = 113 bits (57), Expect = 5e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 56 tgggcgcagtggttgcgcggctggacggccgaggagaaccgccacggcgacctcctcaac 115 ||||||| |||| | ||||| ||| | |||||||||||||||||||||||| | |||||| Sbjct: 493 tgggcgcggtggatccgcgggtggtccgccgaggagaaccgccacggcgacgtgctcaac 552 Query: 116 cgctacctctacctctccggccgcgtcgacatgcgccaggt 156 |||||| | ||||||||||||||| |||||||||||||||| Sbjct: 553 cgctacatgtacctctccggccgcctcgacatgcgccaggt 593 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Plus Query: 211 gagcccataccacagcgtgatctacggcgcgttccaggagcgggcgaccttcgtctccca 270 |||||| |||||| || | ||||||| ||||||||||||||| || ||| | ||||||| Sbjct: 648 gagcccctaccacggcttcatctacgtcgcgttccaggagcgcgccaccgccatctccca 707 Query: 271 cgtgaacacggcg 283 || ||||||||| Sbjct: 708 cggcaacacggcg 720
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 113 bits (57), Expect = 5e-22 Identities = 90/101 (89%) Strand = Plus / Minus Query: 56 tgggcgcagtggttgcgcggctggacggccgaggagaaccgccacggcgacctcctcaac 115 ||||||| |||| | ||||| ||| | |||||||||||||||||||||||| | |||||| Sbjct: 5782115 tgggcgcggtggatccgcgggtggtccgccgaggagaaccgccacggcgacgtgctcaac 5782056 Query: 116 cgctacctctacctctccggccgcgtcgacatgcgccaggt 156 |||||| | ||||||||||||||| |||||||||||||||| Sbjct: 5782055 cgctacatgtacctctccggccgcctcgacatgcgccaggt 5782015 Score = 89.7 bits (45), Expect = 8e-15 Identities = 81/93 (87%) Strand = Plus / Minus Query: 56 tgggcgcagtggttgcgcggctggacggccgaggagaaccgccacggcgacctcctcaac 115 ||||||| |||| | ||||| ||| | |||||||||||||||||||||||| | |||||| Sbjct: 5746469 tgggcgcggtggatccgcgggtggtccgccgaggagaaccgccacggcgacgtgctcaac 5746410 Query: 116 cgctacctctacctctccggccgcgtcgacatg 148 || ||| | ||||||||||||||| |||||||| Sbjct: 5746409 cggtacatgtacctctccggccgcttcgacatg 5746377 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 211 gagcccataccacagcgtgatctacggcgcgttccaggagcgggcgaccttcgtctccca 270 |||||| |||||| || | ||||||| ||||||||||||||| || ||| | ||||||| Sbjct: 5781960 gagcccctaccacggcttcatctacgtcgcgttccaggagcgcgccaccgccatctccca 5781901 Query: 271 cgtgaacacggcg 283 || ||||||||| Sbjct: 5781900 cggcaacacggcg 5781888 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Minus Query: 338 gccgccgacgagaagaggcacgaggcgggctacacc 373 ||||||||||||||| |||||||||| | ||||||| Sbjct: 5746181 gccgccgacgagaagcggcacgaggccgcctacacc 5746146
>dbj|AP005416.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23 Length = 149341 Score = 113 bits (57), Expect = 5e-22 Identities = 90/101 (89%) Strand = Plus / Minus Query: 56 tgggcgcagtggttgcgcggctggacggccgaggagaaccgccacggcgacctcctcaac 115 ||||||| |||| | ||||| ||| | |||||||||||||||||||||||| | |||||| Sbjct: 136740 tgggcgcggtggatccgcgggtggtccgccgaggagaaccgccacggcgacgtgctcaac 136681 Query: 116 cgctacctctacctctccggccgcgtcgacatgcgccaggt 156 |||||| | ||||||||||||||| |||||||||||||||| Sbjct: 136680 cgctacatgtacctctccggccgcctcgacatgcgccaggt 136640 Score = 89.7 bits (45), Expect = 8e-15 Identities = 81/93 (87%) Strand = Plus / Minus Query: 56 tgggcgcagtggttgcgcggctggacggccgaggagaaccgccacggcgacctcctcaac 115 ||||||| |||| | ||||| ||| | |||||||||||||||||||||||| | |||||| Sbjct: 101094 tgggcgcggtggatccgcgggtggtccgccgaggagaaccgccacggcgacgtgctcaac 101035 Query: 116 cgctacctctacctctccggccgcgtcgacatg 148 || ||| | ||||||||||||||| |||||||| Sbjct: 101034 cggtacatgtacctctccggccgcttcgacatg 101002 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 211 gagcccataccacagcgtgatctacggcgcgttccaggagcgggcgaccttcgtctccca 270 |||||| |||||| || | ||||||| ||||||||||||||| || ||| | ||||||| Sbjct: 136585 gagcccctaccacggcttcatctacgtcgcgttccaggagcgcgccaccgccatctccca 136526 Query: 271 cgtgaacacggcg 283 || ||||||||| Sbjct: 136525 cggcaacacggcg 136513 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Minus Query: 338 gccgccgacgagaagaggcacgaggcgggctacacc 373 ||||||||||||||| |||||||||| | ||||||| Sbjct: 100806 gccgccgacgagaagcggcacgaggccgcctacacc 100771
>dbj|AP004589.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0556A11 Length = 138096 Score = 113 bits (57), Expect = 5e-22 Identities = 90/101 (89%) Strand = Plus / Minus Query: 56 tgggcgcagtggttgcgcggctggacggccgaggagaaccgccacggcgacctcctcaac 115 ||||||| |||| | ||||| ||| | |||||||||||||||||||||||| | |||||| Sbjct: 36260 tgggcgcggtggatccgcgggtggtccgccgaggagaaccgccacggcgacgtgctcaac 36201 Query: 116 cgctacctctacctctccggccgcgtcgacatgcgccaggt 156 |||||| | ||||||||||||||| |||||||||||||||| Sbjct: 36200 cgctacatgtacctctccggccgcctcgacatgcgccaggt 36160 Score = 89.7 bits (45), Expect = 8e-15 Identities = 81/93 (87%) Strand = Plus / Minus Query: 56 tgggcgcagtggttgcgcggctggacggccgaggagaaccgccacggcgacctcctcaac 115 ||||||| |||| | ||||| ||| | |||||||||||||||||||||||| | |||||| Sbjct: 614 tgggcgcggtggatccgcgggtggtccgccgaggagaaccgccacggcgacgtgctcaac 555 Query: 116 cgctacctctacctctccggccgcgtcgacatg 148 || ||| | ||||||||||||||| |||||||| Sbjct: 554 cggtacatgtacctctccggccgcttcgacatg 522 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 211 gagcccataccacagcgtgatctacggcgcgttccaggagcgggcgaccttcgtctccca 270 |||||| |||||| || | ||||||| ||||||||||||||| || ||| | ||||||| Sbjct: 36105 gagcccctaccacggcttcatctacgtcgcgttccaggagcgcgccaccgccatctccca 36046 Query: 271 cgtgaacacggcg 283 || ||||||||| Sbjct: 36045 cggcaacacggcg 36033 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Minus Query: 338 gccgccgacgagaagaggcacgaggcgggctacacc 373 ||||||||||||||| |||||||||| | ||||||| Sbjct: 326 gccgccgacgagaagcggcacgaggccgcctacacc 291
>ref|XM_480551.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1564 Score = 89.7 bits (45), Expect = 8e-15 Identities = 81/93 (87%) Strand = Plus / Plus Query: 56 tgggcgcagtggttgcgcggctggacggccgaggagaaccgccacggcgacctcctcaac 115 ||||||| |||| | ||||| ||| | |||||||||||||||||||||||| | |||||| Sbjct: 614 tgggcgcggtggatccgcgggtggtccgccgaggagaaccgccacggcgacgtgctcaac 673 Query: 116 cgctacctctacctctccggccgcgtcgacatg 148 || ||| | ||||||||||||||| |||||||| Sbjct: 674 cggtacatgtacctctccggccgcttcgacatg 706 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 338 gccgccgacgagaagaggcacgaggcgggctacacc 373 ||||||||||||||| |||||||||| | ||||||| Sbjct: 902 gccgccgacgagaagcggcacgaggccgcctacacc 937
>dbj|AK105852.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-G10, full insert sequence Length = 1564 Score = 89.7 bits (45), Expect = 8e-15 Identities = 81/93 (87%) Strand = Plus / Plus Query: 56 tgggcgcagtggttgcgcggctggacggccgaggagaaccgccacggcgacctcctcaac 115 ||||||| |||| | ||||| ||| | |||||||||||||||||||||||| | |||||| Sbjct: 614 tgggcgcggtggatccgcgggtggtccgccgaggagaaccgccacggcgacgtgctcaac 673 Query: 116 cgctacctctacctctccggccgcgtcgacatg 148 || ||| | ||||||||||||||| |||||||| Sbjct: 674 cggtacatgtacctctccggccgcttcgacatg 706 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 338 gccgccgacgagaagaggcacgaggcgggctacacc 373 ||||||||||||||| |||||||||| | ||||||| Sbjct: 902 gccgccgacgagaagcggcacgaggccgcctacacc 937
>ref|NM_190163.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1146 Score = 87.7 bits (44), Expect = 3e-14 Identities = 83/96 (86%) Strand = Plus / Plus Query: 76 ctggacggccgaggagaaccgccacggcgacctcctcaaccgctacctctacctctccgg 135 |||||| |||||||||||||||||||||||| ||||| | ||| | ||||||||||| Sbjct: 459 ctggaccgccgaggagaaccgccacggcgacatcctcggcaagtacatgtacctctccgg 518 Query: 136 ccgcgtcgacatgcgccaggtcgagaccaccgtcca 171 |||||||||||||||| |||||||| |||||||| Sbjct: 519 ccgcgtcgacatgcgcatggtcgagaagaccgtcca 554 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 gccgccgacgagaagaggcacgag 361 ||||||||||||||| |||||||| Sbjct: 721 gccgccgacgagaagcggcacgag 744
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 87.7 bits (44), Expect = 3e-14 Identities = 83/96 (86%) Strand = Plus / Plus Query: 76 ctggacggccgaggagaaccgccacggcgacctcctcaaccgctacctctacctctccgg 135 |||||| |||||||||||||||||||||||| ||||| | ||| | ||||||||||| Sbjct: 38218235 ctggaccgccgaggagaaccgccacggcgacatcctcggcaagtacatgtacctctccgg 38218294 Query: 136 ccgcgtcgacatgcgccaggtcgagaccaccgtcca 171 |||||||||||||||| |||||||| |||||||| Sbjct: 38218295 ccgcgtcgacatgcgcatggtcgagaagaccgtcca 38218330 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 gccgccgacgagaagaggcacgag 361 ||||||||||||||| |||||||| Sbjct: 38218583 gccgccgacgagaagcggcacgag 38218606
>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0018C10 Length = 200183 Score = 87.7 bits (44), Expect = 3e-14 Identities = 83/96 (86%) Strand = Plus / Plus Query: 76 ctggacggccgaggagaaccgccacggcgacctcctcaaccgctacctctacctctccgg 135 |||||| |||||||||||||||||||||||| ||||| | ||| | ||||||||||| Sbjct: 137469 ctggaccgccgaggagaaccgccacggcgacatcctcggcaagtacatgtacctctccgg 137528 Query: 136 ccgcgtcgacatgcgccaggtcgagaccaccgtcca 171 |||||||||||||||| |||||||| |||||||| Sbjct: 137529 ccgcgtcgacatgcgcatggtcgagaagaccgtcca 137564 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 gccgccgacgagaagaggcacgag 361 ||||||||||||||| |||||||| Sbjct: 137817 gccgccgacgagaagcggcacgag 137840
>dbj|AK120809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014E24, full insert sequence Length = 1399 Score = 87.7 bits (44), Expect = 3e-14 Identities = 83/96 (86%) Strand = Plus / Plus Query: 76 ctggacggccgaggagaaccgccacggcgacctcctcaaccgctacctctacctctccgg 135 |||||| |||||||||||||||||||||||| ||||| | ||| | ||||||||||| Sbjct: 525 ctggaccgccgaggagaaccgccacggcgacatcctcggcaagtacatgtacctctccgg 584 Query: 136 ccgcgtcgacatgcgccaggtcgagaccaccgtcca 171 |||||||||||||||| |||||||| |||||||| Sbjct: 585 ccgcgtcgacatgcgcatggtcgagaagaccgtcca 620 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 gccgccgacgagaagaggcacgag 361 ||||||||||||||| |||||||| Sbjct: 787 gccgccgacgagaagcggcacgag 810
>dbj|AK101524.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046O20, full insert sequence Length = 1349 Score = 87.7 bits (44), Expect = 3e-14 Identities = 83/96 (86%) Strand = Plus / Plus Query: 76 ctggacggccgaggagaaccgccacggcgacctcctcaaccgctacctctacctctccgg 135 |||||| |||||||||||||||||||||||| ||||| | ||| | ||||||||||| Sbjct: 533 ctggaccgccgaggagaaccgccacggcgacatcctcggcaagtacatgtacctctccgg 592 Query: 136 ccgcgtcgacatgcgccaggtcgagaccaccgtcca 171 |||||||||||||||| |||||||| |||||||| Sbjct: 593 ccgcgtcgacatgcgcatggtcgagaagaccgtcca 628 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 gccgccgacgagaagaggcacgag 361 ||||||||||||||| |||||||| Sbjct: 795 gccgccgacgagaagcggcacgag 818
>dbj|AK059526.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-D03, full insert sequence Length = 1323 Score = 87.7 bits (44), Expect = 3e-14 Identities = 83/96 (86%) Strand = Plus / Plus Query: 76 ctggacggccgaggagaaccgccacggcgacctcctcaaccgctacctctacctctccgg 135 |||||| |||||||||||||||||||||||| ||||| | ||| | ||||||||||| Sbjct: 515 ctggaccgccgaggagaaccgccacggcgacatcctcggcaagtacatgtacctctccgg 574 Query: 136 ccgcgtcgacatgcgccaggtcgagaccaccgtcca 171 |||||||||||||||| |||||||| |||||||| Sbjct: 575 ccgcgtcgacatgcgcatggtcgagaagaccgtcca 610 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 gccgccgacgagaagaggcacgag 361 ||||||||||||||| |||||||| Sbjct: 777 gccgccgacgagaagcggcacgag 800
>gb|BT016658.1| Zea mays clone Contig491 mRNA sequence Length = 1406 Score = 85.7 bits (43), Expect = 1e-13 Identities = 118/143 (82%) Strand = Plus / Plus Query: 29 gacgacaccggcgccagcggcctcccctgggcgcagtggttgcgcggctggacggccgag 88 ||||| |||||||||||| | |||||||||| ||| ||||| |||||| |||||| Sbjct: 484 gacgagaccggcgccagcaactgcccctgggcggtctggacgcgcgcctggactgccgag 543 Query: 89 gagaaccgccacggcgacctcctcaaccgctacctctacctctccggccgcgtcgacatg 148 |||||||||||||||||| ||||| | ||| | ||||| |||||||||||||||||| Sbjct: 544 gagaaccgccacggcgacatcctcggcaagtacatgtacctatccggccgcgtcgacatg 603 Query: 149 cgccaggtcgagaccaccgtcca 171 ||| |||||||| |||||||| Sbjct: 604 cgcatggtcgagaagaccgtcca 626 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 gccgccgacgagaagaggcacgag 361 ||||||||||||||| |||||||| Sbjct: 793 gccgccgacgagaagcggcacgag 816
>gb|BT018751.1| Zea mays clone EL01N0523A03.d mRNA sequence Length = 1015 Score = 85.7 bits (43), Expect = 1e-13 Identities = 103/123 (83%) Strand = Plus / Plus Query: 29 gacgacaccggcgccagcggcctcccctgggcgcagtggttgcgcggctggacggccgag 88 ||||| |||||||||||| | |||||||||| ||| ||||| |||||| |||||| Sbjct: 217 gacgagaccggcgccagcaactgcccctgggcggtctggacgcgcgcctggactgccgag 276 Query: 89 gagaaccgccacggcgacctcctcaaccgctacctctacctctccggccgcgtcgacatg 148 |||||||||||||||||| |||||| | ||| | ||||| |||||||||||||||||| Sbjct: 277 gagaaccgccacggcgacatcctcagcaagtacatgtacctatccggccgcgtcgacatg 336 Query: 149 cgc 151 ||| Sbjct: 337 cgc 339 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 gccgccgacgagaagaggcacgag 361 ||||||||||||||| |||||||| Sbjct: 526 gccgccgacgagaagcggcacgag 549
>ref|XM_469670.1| Oryza sativa (japonica cultivar-group), mRNA Length = 792 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 83 gccgaggagaaccgccacggcgacctcctcaaccgctacctctacctctccggccgcgtc 142 ||||||||||||| ||||| |||| | |||||||| ||| | ||||||||||||||| | Sbjct: 337 gccgaggagaaccaccacgacgacgtgctcaaccggtacatgtacctctccggccgcctt 396 Query: 143 gacatgcgccaggt 156 |||||||||||||| Sbjct: 397 gacatgcgccaggt 410
>gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic sequence, complete sequence Length = 163972 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 83 gccgaggagaaccgccacggcgacctcctcaaccgctacctctacctctccggccgcgtc 142 ||||||||||||| ||||| |||| | |||||||| ||| | ||||||||||||||| | Sbjct: 113930 gccgaggagaaccaccacgacgacgtgctcaaccggtacatgtacctctccggccgcctt 113989 Query: 143 gacatgcgccaggt 156 |||||||||||||| Sbjct: 113990 gacatgcgccaggt 114003
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Minus Query: 87 aggagaaccgccacggcgacctcctcaaccgctacctctacctctccggccgcgtcgaca 146 |||||||||||||||||||| | |||||||| ||| | || |||||||||||| | |||| Sbjct: 17629607 aggagaaccgccacggcgacgtgctcaaccgatacatgtatctctccggccgccttgaca 17629548 Query: 147 tgcgccaggt 156 |||||||||| Sbjct: 17629547 tgcgccaggt 17629538
>dbj|AP003951.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1288_C01 Length = 111223 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Minus Query: 87 aggagaaccgccacggcgacctcctcaaccgctacctctacctctccggccgcgtcgaca 146 |||||||||||||||||||| | |||||||| ||| | || |||||||||||| | |||| Sbjct: 7505 aggagaaccgccacggcgacgtgctcaaccgatacatgtatctctccggccgccttgaca 7446 Query: 147 tgcgccaggt 156 |||||||||| Sbjct: 7445 tgcgccaggt 7436
>dbj|AP003527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0564B04 Length = 64684 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Minus Query: 87 aggagaaccgccacggcgacctcctcaaccgctacctctacctctccggccgcgtcgaca 146 |||||||||||||||||||| | |||||||| ||| | || |||||||||||| | |||| Sbjct: 55955 aggagaaccgccacggcgacgtgctcaaccgatacatgtatctctccggccgccttgaca 55896 Query: 147 tgcgccaggt 156 |||||||||| Sbjct: 55895 tgcgccaggt 55886
>ref|XM_465876.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1247 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 83 gccgaggagaaccgccacggcgacctcctcaaccgctacctctacctctccggccgcgtc 142 |||||||||||||| ||||||||||| | ||| |||||||||||| ||||| | ||| Sbjct: 599 gccgaggagaaccggcacggcgacctgatgaacaagtacctctacctcaccggcagggtc 658 Query: 143 gacatgcgccaggtcgaga 161 |||||| | |||||||||| Sbjct: 659 gacatgaggcaggtcgaga 677 Score = 40.1 bits (20), Expect = 6.3 Identities = 38/44 (86%) Strand = Plus / Plus Query: 240 cgttccaggagcgggcgaccttcgtctcccacgtgaacacggcg 283 ||||||||||||| || |||| | ||||||||| ||||||||| Sbjct: 756 cgttccaggagcgcgccacctccatctcccacggcaacacggcg 799
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 83 gccgaggagaaccgccacggcgacctcctcaaccgctacctctacctctccggccgcgtc 142 |||||||||||||| ||||||||||| | ||| |||||||||||| ||||| | ||| Sbjct: 18054574 gccgaggagaaccggcacggcgacctgatgaacaagtacctctacctcaccggcagggtc 18054515 Query: 143 gacatgcgccaggtcgaga 161 |||||| | |||||||||| Sbjct: 18054514 gacatgaggcaggtcgaga 18054496 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Minus Query: 382 cgccaagctcttcgaggtggaccc 405 |||||||||||||||||||||||| Sbjct: 18052396 cgccaagctcttcgaggtggaccc 18052373 Score = 40.1 bits (20), Expect = 6.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 240 cgttccaggagcgggcgaccttcgtctcccacgtgaacacggcg 283 ||||||||||||| || |||| | ||||||||| ||||||||| Sbjct: 18052538 cgttccaggagcgcgccacctccatctcccacggcaacacggcg 18052495
>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F04 Length = 139563 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 83 gccgaggagaaccgccacggcgacctcctcaaccgctacctctacctctccggccgcgtc 142 |||||||||||||| ||||||||||| | ||| |||||||||||| ||||| | ||| Sbjct: 116168 gccgaggagaaccggcacggcgacctgatgaacaagtacctctacctcaccggcagggtc 116109 Query: 143 gacatgcgccaggtcgaga 161 |||||| | |||||||||| Sbjct: 116108 gacatgaggcaggtcgaga 116090 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Minus Query: 382 cgccaagctcttcgaggtggaccc 405 |||||||||||||||||||||||| Sbjct: 113990 cgccaagctcttcgaggtggaccc 113967 Score = 40.1 bits (20), Expect = 6.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 240 cgttccaggagcgggcgaccttcgtctcccacgtgaacacggcg 283 ||||||||||||| || |||| | ||||||||| ||||||||| Sbjct: 114132 cgttccaggagcgcgccacctccatctcccacggcaacacggcg 114089
>dbj|AK069683.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030N09, full insert sequence Length = 1241 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 83 gccgaggagaaccgccacggcgacctcctcaaccgctacctctacctctccggccgcgtc 142 |||||||||||||| ||||||||||| | ||| |||||||||||| ||||| | ||| Sbjct: 599 gccgaggagaaccggcacggcgacctgatgaacaagtacctctacctcaccggcagggtc 658 Query: 143 gacatgcgccaggtcgaga 161 |||||| | |||||||||| Sbjct: 659 gacatgaggcaggtcgaga 677 Score = 40.1 bits (20), Expect = 6.3 Identities = 38/44 (86%) Strand = Plus / Plus Query: 240 cgttccaggagcgggcgaccttcgtctcccacgtgaacacggcg 283 ||||||||||||| || |||| | ||||||||| ||||||||| Sbjct: 756 cgttccaggagcgcgccacctccatctcccacggcaacacggcg 799
>gb|AY107346.1| Zea mays PCO063977 mRNA sequence Length = 856 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 338 gccgccgacgagaagaggcacgaggcgg 365 ||||||||||||||| |||||||||||| Sbjct: 103 gccgccgacgagaagcggcacgaggcgg 130
>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12 Length = 340900 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 320 aagatctgcggcgtgattgccgccgac 346 ||||||| ||||||||||||||||||| Sbjct: 243009 aagatctccggcgtgattgccgccgac 242983
>gb|AC134048.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0076K20, complete sequence Length = 127338 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 170 caccacctcctccgcaacggca 191 |||||||||||||||||||||| Sbjct: 83977 caccacctcctccgcaacggca 83956
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 170 caccacctcctccgcaacggca 191 |||||||||||||||||||||| Sbjct: 2642821 caccacctcctccgcaacggca 2642842
>dbj|AK107140.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-D02, full insert sequence Length = 1369 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 170 caccacctcctccgcaacggca 191 |||||||||||||||||||||| Sbjct: 972 caccacctcctccgcaacggca 993
>gb|AY104235.1| Zea mays PCO105183 mRNA sequence Length = 1780 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Plus Query: 242 ttccaggagcgggcgaccttcgtctcccacgtgaacac 279 ||||| ||||||||||||||| |||| |||| |||||| Sbjct: 926 ttccaagagcgggcgaccttcatctcacacgggaacac 963
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 170 caccacctcctccgcaacggca 191 |||||||||||||||||||||| Sbjct: 2651852 caccacctcctccgcaacggca 2651873
>ref|XM_468573.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1056 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 103 cgacctcctcaaccgctacctctacctctccggccgc 139 |||||||| | ||||||||||||||||| ||| |||| Sbjct: 204 cgacctccaccaccgctacctctacctcgccgaccgc 240
>gb|AC160126.2| Mus musculus BAC clone RP23-295C1 from chromosome 13, complete sequence Length = 212570 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 cgggctacaccagggtgtccg 383 ||||||||||||||||||||| Sbjct: 154721 cgggctacaccagggtgtccg 154701
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 75 gctggacggccgaggagaaccgccacggc 103 ||||||| |||||||||||||| |||||| Sbjct: 628492 gctggaccgccgaggagaaccggcacggc 628464 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 atcgcggacgacaccggcgccagc 46 ||||||| |||||||||||||||| Sbjct: 3792153 atcgcggccgacaccggcgccagc 3792130
>dbj|AK101157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027K03, full insert sequence Length = 1579 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 103 cgacctcctcaaccgctacctctacctctccggccgc 139 |||||||| | ||||||||||||||||| ||| |||| Sbjct: 464 cgacctccaccaccgctacctctacctcgccgaccgc 500
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 cgcggctggacggccgaggag 91 ||||||||||||||||||||| Sbjct: 3275874 cgcggctggacggccgaggag 3275854 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 75 gctggacggccgaggagaaccgccacgg 102 ||||||| |||||||||||||| ||||| Sbjct: 681190 gctggaccgccgaggagaaccggcacgg 681163
>emb|CT010439.6| Mouse DNA sequence from clone RP23-26E8 on chromosome 13, complete sequence Length = 231247 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 cgggctacaccagggtgtccg 383 ||||||||||||||||||||| Sbjct: 209295 cgggctacaccagggtgtccg 209275
>gb|AC105733.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0043C10, complete sequence Length = 108688 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 103 cgacctcctcaaccgctacctctacctctccggccgc 139 |||||||| | ||||||||||||||||| ||| |||| Sbjct: 24262 cgacctccaccaccgctacctctacctcgccgaccgc 24226
>ref|XM_867947.1| PREDICTED: Bos taurus similar to D-dopachrome tautomerase (Phenylpyruvate tautomerase II) (LOC615999), mRNA Length = 574 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ggacggccgaggagaaccgc 97 |||||||||||||||||||| Sbjct: 276 ggacggccgaggagaaccgc 295
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gttgcgcggctggacggccg 86 |||||||||||||||||||| Sbjct: 2772899 gttgcgcggctggacggccg 2772918
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16 Length = 348642 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 gccgggcagcacggcgaccaggcg 313 |||| ||||||||||||||||||| Sbjct: 311364 gccgcgcagcacggcgaccaggcg 311341
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 290 gccgggcagcacggcgaccaggcg 313 |||| ||||||||||||||||||| Sbjct: 273541 gccgcgcagcacggcgaccaggcg 273564
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12 Length = 348934 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 gccgggcagcacggcgaccaggcg 313 |||| ||||||||||||||||||| Sbjct: 263099 gccgcgcagcacggcgaccaggcg 263076
>gb|DQ397631.1| Cenarchaeum symbiosum clone C04A07, complete sequence Length = 42553 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 cggcatggaaatgctggtgc 206 |||||||||||||||||||| Sbjct: 12632 cggcatggaaatgctggtgc 12651
>gb|DQ397627.1| Cenarchaeum symbiosum clone C02B01, complete sequence Length = 39940 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cggcatggaaatgctggtgc 206 |||||||||||||||||||| Sbjct: 30353 cggcatggaaatgctggtgc 30334
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 cgcgctggcgcacgtcatgc 440 |||||||||||||||||||| Sbjct: 2000797 cgcgctggcgcacgtcatgc 2000816
>gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds Length = 100773 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 ccgaggagaaccgccacggcgacc 107 |||||||| ||||||||||||||| Sbjct: 66822 ccgaggagcaccgccacggcgacc 66799
>gb|AY109739.1| Zea mays CL27608_1 mRNA sequence Length = 607 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 338 gccgccgacgagaagaggcacgag 361 ||||||||||||||| |||||||| Sbjct: 552 gccgccgacgagaagcggcacgag 529
>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds; chivosazol biosynthetic gene cluster, complete sequence; and hypothetical protein gene, complete cds Length = 96547 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 gctcgccgggcagcacggcg 305 |||||||||||||||||||| Sbjct: 67534 gctcgccgggcagcacggcg 67515
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 129 tctccggccgcgtcgacatgcgccaggt 156 ||||||||||||||| | |||||||||| Sbjct: 2964013 tctccggccgcgtcggcctgcgccaggt 2964040 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,334,971 Number of Sequences: 3902068 Number of extensions: 2334971 Number of successful extensions: 57382 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56107 Number of HSP's gapped (non-prelim): 1263 length of query: 464 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 442 effective length of database: 17,147,199,772 effective search space: 7579062299224 effective search space used: 7579062299224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
