>POL1_TORVR (P29150) RNA1 polyprotein (P1) [Contains: X1 protein; X2 protein;|
            Putative ATP-dependent helicase (EC 3.6.1.-) (NTP-binding
            protein) (NTB) (Membrane-binding protein); Viral
            genome-linked protein (VPg); Picornain 3C-like protease
            (EC 3.4.22.-)
          Length = 2197

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
 Frame = -1

Query: 444  HGGAPWISSL---AEKLDRSLQFHHTKHK--SYTRSCSQDQRITFQIIRRRGNKNLILQF 280
            H  + W+S     AE L R  Q    +H   SY +S S+     F I+++  N +   Q+
Sbjct: 948  HPLSEWMSMQELSAELLLRYQQHREAQHAEYSYWKSTSRTSHDVFDILQKCVNGDT--QW 1005

Query: 279  IPIPVELWKPSKLAGT*IPDQIERKRN*TRVRLIHNFIYLFDSRGGEEPISRPDKNRQRR 100
            + +PV++          IP  I +K    RV  I   I++FD    E    +  +N   R
Sbjct: 1006 LSLPVDV----------IPPSIRQKHKGNRVFAIDGRIFMFDYMTLEYDEIKEKENLDAR 1055

Query: 99   HTKASSIQ 76
            H +A  ++
Sbjct: 1056 HLEARILE 1063

>CXA7_MOUSE (P28229) Gap junction alpha-7 protein (Connexin-45) (Cx45)|
          Length = 396

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 116 RIDREDTRKHHQSNPFGPREKGRA*YVGTGNTNRSNL 6
           R+D      HHQ+NP GPREK +A       +N+S++
Sbjct: 348 RLDLAIQAYHHQNNPHGPREK-KAKVGSKSGSNKSSI 383

>YOM4_CAEEL (Q23202) Hypothetical UPF0023 protein W06E11.4 in chromosome III|
          Length = 253

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 415 RRKAR*ISAVPPHETQIIHTKLQPRSTDNIPDNSKEGEQELDTAIHPNS 269
           R K +   A+P  E + +HTKL+   +D   D+ ++G  E+   I P S
Sbjct: 171 RAKMKIRVAIPTKEAKSVHTKLKTLFSDVEVDDWQDGSLEMVGLIEPGS 219

>ARI4A_HUMAN (P29374) AT-rich interactive domain-containing protein 4A (ARID|
            domain-containing protein 4A) (Retinoblastoma-binding
            protein 1) (RBBP-1)
          Length = 1257

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -3

Query: 343  RSTDNIPDNSKEGEQELDTAIHPNSGGTVETFKISRHLNSGPNRKKTE 200
            RS   I  + K+GE++     HPNS  +  T+K S  LN   N   TE
Sbjct: 1139 RSPARISPHIKDGEKDKHREKHPNS--SPRTYKWSFQLNELDNMNSTE 1184


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,253,684
Number of Sequences: 219361
Number of extensions: 1510946
Number of successful extensions: 4058
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4057
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)