ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast79b09 |
|---|---|
| Clone Library Name | barley_pub |
>SYQ_XYLFT (Q87DU6) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 26.9 bits (58), Expect(2) = 0.12 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -2 Query: 124 LPKMAHLEHPIPWHGSPKQPSHPTYLKF 41 LP +HL P+ G P++PS P ++F Sbjct: 256 LPNNSHLLKPLLDKGFPQEPSQPRQIEF 283 Score = 26.6 bits (57), Expect(2) = 0.12 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -3 Query: 267 VTHSLADFDFHDHRP 223 +THSL +F DHRP Sbjct: 231 ITHSLCTLEFEDHRP 245
>SYQ_XYLFA (Q9PDP1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 26.9 bits (58), Expect(2) = 0.12 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -2 Query: 124 LPKMAHLEHPIPWHGSPKQPSHPTYLKF 41 LP +HL P+ G P++PS P ++F Sbjct: 256 LPNNSHLLKPLLDKGFPQEPSQPRQIEF 283 Score = 26.6 bits (57), Expect(2) = 0.12 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -3 Query: 267 VTHSLADFDFHDHRP 223 +THSL +F DHRP Sbjct: 231 ITHSLCTLEFEDHRP 245
>ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline-rich protein| 1) (NDPP-1) Length = 802 Score = 31.6 bits (70), Expect = 1.0 Identities = 18/45 (40%), Positives = 21/45 (46%) Frame = -3 Query: 438 PPRSAPTAAPPGLAXRVLQRPPRPPTHRGMALAQMAGCGSRASAP 304 PP S P A PP PP P LA ++ CGS+AS P Sbjct: 434 PPTSGPAAPPPPPPPPPPPPPPPLPPPPLPPLASLSHCGSQASPP 478
>PGMI_AERPE (Q9YE01) Bifunctional phosphoglucose/phosphomannose isomerase| (Glucose-6-phosphate isomerase) (EC 5.3.1.9) (GPI) (Phosphoglucose isomerase) (PGI) (Mannose-6-phosphate isomerase) (EC 5.3.1.8) (Phosphomannose isomerase) (PMI) Length = 335 Score = 31.6 bits (70), Expect = 1.0 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 11/46 (23%) Frame = -3 Query: 414 APPGLAXRVLQ--RPPRPPTHR--GMALAQMAG-------CGSRAS 310 AP G RV++ RPPRPP HR G+ LA +G CGS S Sbjct: 57 APQGPEFRVVKDFRPPRPPRHRGYGLVLASYSGNTLETVECGSLLS 102
>PP2BB_HUMAN (P16298) Serine/threonine-protein phosphatase 2B catalytic subunit| beta isoform (EC 3.1.3.16) (Calmodulin-dependent calcineurin A subunit beta isoform) (CAM-PRP catalytic subunit) Length = 524 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/28 (53%), Positives = 17/28 (60%) Frame = -3 Query: 438 PPRSAPTAAPPGLAXRVLQRPPRPPTHR 355 PP P PPG A RV++ P PPTHR Sbjct: 11 PPPPPPPPPPPG-ADRVVKAVPFPPTHR 37
>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1| Length = 574 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Frame = -3 Query: 438 PPRSAPTAA---PPGLAXRVLQRPPRPP---THRGMALAQMAGCGSRASAPSI 298 PPRSAP+ PP + R + PP PP R G SR S P + Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPV 417
>PLMN_BOVIN (P06868) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin| heavy chain A; Activation peptide; Plasmin heavy chain A, short form; Plasmin light chain B] Length = 812 Score = 30.0 bits (66), Expect = 3.0 Identities = 18/55 (32%), Positives = 22/55 (40%) Frame = +2 Query: 149 PEAGLRCPTAR*PRTHKGCWSIKTAGRWSWKSKSAKECVTTHLPNQLAPKMDGAE 313 P AGL R P K W T R W+ + K+C T AP+ G E Sbjct: 424 PNAGLTMNYCRNPDADKSPWCYTTDPRVRWEFCNLKKCSETPEQVPAAPQAPGVE 478
>HXD13_MOUSE (P70217) Homeobox protein Hox-D13 (Hox-4.8)| Length = 339 Score = 29.6 bits (65), Expect = 3.9 Identities = 17/48 (35%), Positives = 21/48 (43%) Frame = -3 Query: 438 PPRSAPTAAPPGLAXRVLQRPPRPPTHRGMALAQMAGCGSRASAPSIF 295 P S+ + A PG L P TH G A A A + A+A S F Sbjct: 23 PASSSSSVAAPGQCRGFLSAPVFAGTHSGRAAAAAAAAAAAAAAASTF 70
>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)| (Trinucleotide repeat-containing gene 13 protein) Length = 1312 Score = 29.3 bits (64), Expect = 5.1 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -3 Query: 441 LPPRSAPTAAPPGLAXRVLQRPPRPPTH 358 LPPR+A PP R RP RPP+H Sbjct: 573 LPPRAATPTRPP---SRPPSRPSRPPSH 597
>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein| Length = 2480 Score = 29.3 bits (64), Expect = 5.1 Identities = 28/88 (31%), Positives = 32/88 (36%), Gaps = 8/88 (9%) Frame = +2 Query: 200 GCWSIKTAGRWSWKSKSAKECVTTHLPNQLAPKM--------DGAEARDPHPAIWASAMP 355 G W TAGR SA +T LP P+ DG ++ P I A Sbjct: 436 GLWGHGTAGRERCSQDSASPASSTGLPEGSEPESSCCPRTPEDGVDSASPSAQIGAE--- 492 Query: 356 R*VGGRGGRCKTRXASPGGAAVGADLGG 439 R GG G PG GA LGG Sbjct: 493 RKAGGSLGE------DPGLCIDGAGLGG 514
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -3 Query: 441 LPPRSAPTAAPPGLAXRVLQRPPRPPTH 358 LPPR+A PP R RP RPP+H Sbjct: 543 LPPRAATHTRPP---SRPPSRPSRPPSH 567
>ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20) Length = 1906 Score = 28.9 bits (63), Expect = 6.7 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +2 Query: 167 CPTAR*PRTHKGCWSIKTAGRWSWKSKSAKECVTT 271 C PRTHK C S + SWK+ KEC T Sbjct: 1452 CSHLHKPRTHKACRSGRCP---SWKANKWKECSVT 1483
>BCCP_ARATH (Q42533) Biotin carboxyl carrier protein of acetyl-CoA carboxylase,| chloroplast precursor (BCCP) Length = 280 Score = 28.9 bits (63), Expect = 6.7 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Frame = -3 Query: 441 LPPRSAPTAAPPGLAXRVLQRPPRPPTHRGMAL----AQMAGCGSRASAP 304 + P +AP AA P + PP PPT +L + MAG R+ AP Sbjct: 171 MAPPAAPAAAAPAPSTPASLPPPSPPTPAKSSLPTVKSPMAGTFYRSPAP 220
>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88| kDa nuclear pore complex protein) (Nucleoporin Nup84) Length = 742 Score = 28.9 bits (63), Expect = 6.7 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +1 Query: 232 VMEVEIR*GVCNNSPAESTSPENGWR*SARPTPGHLGERH 351 V+ + +R G+ N SPAE+ P S P P HL R+ Sbjct: 22 VVFLRLREGLKNQSPAEADKPATSTSPSCPPLPPHLPTRN 61
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 28.9 bits (63), Expect = 6.7 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = -3 Query: 459 SH*ILLLPPRSAPTAAPPGLAXRVLQRPPRPP 364 SH LLLPP S+P PP A + PP P Sbjct: 1029 SHGSLLLPPASSPPPPPPPPAPQRRATPPLAP 1060
>LITAF_XENTR (Q6P828) Lipopolysaccharide-induced tumor necrosis factor-alpha| factor homolog (LPS-induced TNF-alpha factor homolog) Length = 148 Score = 28.5 bits (62), Expect = 8.7 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = -3 Query: 417 AAPPGLAXRVLQRPPRPPTHRGMALAQMA 331 +APP PP PP H+GM M+ Sbjct: 18 SAPPSYEEATFHHPPYPPLHQGMDAKNMS 46
>TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic| serine protease) (Membrane-type mosaic serine protease) Length = 543 Score = 28.5 bits (62), Expect = 8.7 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Frame = -3 Query: 438 PPRSAPTAAPPGLAXRVLQRPPR-PPTHRGMALAQMAGCGSRASAPS 301 PP+++P APP A P R PP+ + A S S+P+ Sbjct: 47 PPQASPARAPPPQASPARASPARAPPSRSSSGRSSSARSASTTSSPT 93
>SAYP_DROME (Q9VWF2) Supporter of activation of yellow protein (Protein enhancer| of yellow 3) Length = 2006 Score = 28.5 bits (62), Expect = 8.7 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = +2 Query: 140 RDEPEAGLRCPTAR*PRTHKGCWSI--KTAGR---WSWKSKSAKECV 265 RD PEA +RC T R R H C + + GR ++W+ K C+ Sbjct: 1707 RDMPEAFIRCYTCR-KRVHPSCVDMPPRMVGRVRNYNWQCAGCKCCI 1752
>RS13_THEVO (Q97B96) 30S ribosomal protein S13P| Length = 171 Score = 28.5 bits (62), Expect = 8.7 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +3 Query: 141 GMNRKPGYGAQLRANLEPTKGVGRLRQQD 227 G+ + GY R NL+PTK +G L++ + Sbjct: 54 GIGLRLGYAIAERLNLQPTKKIGELKEDE 82
>NPHP4_HUMAN (O75161) Nephrocystin-4 (Nephroretinin)| Length = 1426 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = -3 Query: 438 PPRSAPTA--APPGLAXRVLQRPPRPPTHRGMALAQMA 331 P R PT+ +PP RVL P P G++++Q+A Sbjct: 471 PSRKPPTSPSSPPAPVPRVLAAPQNSPVGPGLSISQLA 508
>YTHD1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1) (DACA-1) Length = 559 Score = 28.5 bits (62), Expect = 8.7 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%) Frame = -3 Query: 417 AAPPGLAXRVLQRPPRP-------PTHRGMALAQMAGCGSRASAP 304 A PP LA Q P +P P +R A Q G GS +++P Sbjct: 307 AQPPALAQPQYQSPQQPPQTRWVAPRNRNAAFGQSGGAGSDSNSP 351 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,549,087 Number of Sequences: 219361 Number of extensions: 1638555 Number of successful extensions: 5595 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5052 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5576 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
