Clone Information

BLAST Search Result

Clone Name	bast79b05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ss...	40	0.002
2	CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine...	40	0.002
3	CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine...	40	0.002
4	RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HS...	40	0.002
5	GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein	40	0.003
6	CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-r...	39	0.005
7	CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine...	39	0.005
8	CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine...	39	0.005
9	MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musa...	39	0.006
10	MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musa...	39	0.006
11	CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine...	38	0.010
12	DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in azoosp...	38	0.014
13	DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in azoosp...	38	0.014
14	GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro...	38	0.014
15	DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in azoosp...	38	0.014
16	GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu...	37	0.018
17	BOLL_MOUSE (Q924M5) Protein boule-like	37	0.018
18	BOLL_MACFA (Q8WP23) Protein boule-like	37	0.023
19	BOLL_HUMAN (Q8N9W6) Protein boule-like	37	0.023
20	GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A	36	0.052
21	GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon...	35	0.067
22	RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, fa...	35	0.088
23	GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7	35	0.088
24	GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2	35	0.11
25	HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (...	35	0.11
26	GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A	35	0.11
27	HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (...	34	0.15
28	HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hn...	34	0.20
29	HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4...	33	0.26
30	SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nucl...	33	0.44
31	RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C...	33	0.44
32	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	32	0.74
33	GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10	32	0.74
34	MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing prote...	31	1.3
35	BOULE_DROME (Q24207) Protein boule	31	1.3
36	PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi...	31	1.7
37	HAM1_METCA (Q602P0) HAM1 protein homolog	30	2.2
38	DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)	30	2.8
39	DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autoso...	30	3.7
40	DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autoso...	30	3.7
41	DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autoso...	30	3.7
42	ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ...	30	3.7
43	ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)	29	4.8
44	RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin...	29	4.8
45	HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (h...	29	4.8
46	DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autoso...	29	4.8
47	MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote...	29	4.8
48	ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec...	29	4.8
49	ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur...	29	4.8
50	MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing prote...	29	6.3
51	ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur...	28	8.2
52	HAM1_GLOVI (Q7NN81) HAM1 protein homolog	28	8.2

>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding|
           protein SEB4)
          Length = 237

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL + T   SLR  F  +GD+EEAVVI+DR
Sbjct: 35  FVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR 67

to top

>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP)
          Length = 172

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL ++TN  SL  +FS YG + E VV+ DR
Sbjct: 9   FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR 41

to top

>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL ++TN  SL  +FS YG + E VV+ DR
Sbjct: 9   FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR 41

to top

>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA|
           binding protein SEB4) (CLL-associated antigen KW-5)
          Length = 216

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL + T   SLR  F  +GD+EEAVVI+DR
Sbjct: 14  FVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR 46

to top

>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL W TN +SL   FS +GD+ ++ +I+DR
Sbjct: 9   FVGGLAWATNDESLEQAFSQFGDITDSKIINDR 41

to top

>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL ++TN  +L  +FS YG + E VV+ DR
Sbjct: 9   FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDR 41

to top

>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL ++TN  +L  +FS YG + E VV+ DR
Sbjct: 9   FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDR 41

to top

>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL ++TN  +L  +FS YG + E VV+ DR
Sbjct: 9   FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDR 41

to top

>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 346

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISD 424
           F+ GL W+T+ DSLR  FS +G++ E +V+ D
Sbjct: 24  FIGGLSWQTSPDSLRDYFSKFGEIRECMVMRD 55

to top

>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 328

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISD 424
           F+ GL W+T+ DSLR  FS +G++ E +V+ D
Sbjct: 24  FIGGLSWQTSPDSLRDYFSKFGEIRECMVMRD 55

to top

>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (xCIRP)
          Length = 163

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           F+ GL +ETN D L   F+ YG + E VV+ DR
Sbjct: 8   FIGGLNFETNEDCLEQAFTKYGRISEVVVVKDR 40

to top

>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 406

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL W T  ++LR+ FS YG++ + V++ D+
Sbjct: 13  FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDK 45

to top

>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 407

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL W T  ++LR+ FS YG++ + V++ D+
Sbjct: 13  FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDK 45

to top

>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL W TN + L+  FS +GD+ ++ +I+DR
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDR 41

to top

>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1) (Proline-rich Vg1
           mRNA-binding protein)
          Length = 360

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL W T  ++LR+ FS YG++ + V++ D+
Sbjct: 13  FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDK 45

to top

>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 15/33 (45%), Positives = 25/33 (75%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL W T+++SL   F++YG++ ++ VI+DR
Sbjct: 11  FVGGLAWATSNESLENAFASYGEILDSKVITDR 43

to top

>BOLL_MOUSE (Q924M5) Protein boule-like|
          Length = 281

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDRPPAAPG 445
           FV G+ ++TN + LR  FS YG ++E  +++DR   + G
Sbjct: 36  FVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKG 74

to top

>BOLL_MACFA (Q8WP23) Protein boule-like|
          Length = 283

 Score = 37.0 bits (84), Expect = 0.023
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDRPPAAPG 445
           FV G+ ++TN   LR  FS YG ++E  +++DR   + G
Sbjct: 36  FVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKG 74

to top

>BOLL_HUMAN (Q8N9W6) Protein boule-like|
          Length = 283

 Score = 37.0 bits (84), Expect = 0.023
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDRPPAAPG 445
           FV G+ ++TN   LR  FS YG ++E  +++DR   + G
Sbjct: 36  FVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKG 74

to top

>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A|
          Length = 169

 Score = 35.8 bits (81), Expect = 0.052
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL W T+  SL   FS +G+L ++ +I+DR
Sbjct: 11  FVGGLAWATDERSLETAFSQFGELVDSKIINDR 43

to top

>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial|
           precursor (AtGRP2)
          Length = 158

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           F+ GL W T+  SLR  F+ +GD+ +A VI DR
Sbjct: 38  FIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDR 70

to top

>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 35.0 bits (79), Expect = 0.088
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDRPPAAPG 445
           F+ GL  ETN   L+A+F  +G + E ++I DR   + G
Sbjct: 11  FIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRG 49

to top

>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7|
          Length = 176

 Score = 35.0 bits (79), Expect = 0.088
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL W T+  +L   F+ YGD+ ++ +I+DR
Sbjct: 11  FVGGLAWATDDRALETAFAQYGDVIDSKIINDR 43

to top

>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL W TN+++L   F+ +G + ++ VI+DR
Sbjct: 11  FVGGLAWATNNETLEQAFANFGQVIDSKVITDR 43

to top

>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           F+ GL  ETN  +L A+F  YG + E +++ DR
Sbjct: 11  FIGGLNTETNEKALEAVFGKYGRIVEIILMKDR 43

to top

>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL W T+  +L   FS YG++ ++ +I+DR
Sbjct: 11  FVGGLAWATDDRALETAFSQYGEVLDSKIINDR 43

to top

>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome) (Glycoprotein
           p43)
          Length = 391

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           F+ GL  ETN  +L A+F  YG + E +++ DR
Sbjct: 11  FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDR 43

to top

>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           F+ GL  ETN  +L A+F  YG + E +++ DR
Sbjct: 11  FIGGLNTETNEKALEAVFGKYGRIVEILLMKDR 43

to top

>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISD 424
           F+ GL W+T  D+LR  F  YG + +  ++ D
Sbjct: 162 FIGGLNWDTTEDNLREYFGKYGTVTDLKIMKD 193

to top

>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear|
           ribonucleoprotein 40) (HNRNP 40)
          Length = 344

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISD 424
           FV GL WET    LR  F  YG++E   V +D
Sbjct: 59  FVGGLSWETTEKELRDHFGKYGEIESINVKTD 90

to top

>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISD 424
           FV GL WET  ++L   F  +GD+ + VV+ +
Sbjct: 10  FVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 41

to top

>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISD 424
           F+R + +E + +  R++FS YG LEE  +  D
Sbjct: 313 FIRNISYEASEEDFRSLFSQYGALEEVHIAID 344

to top

>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV GL W T    L   FS +G++ ++ +I+DR
Sbjct: 9   FVGGLAWATGDAELERTFSQFGEVIDSKIINDR 41

to top

>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1|
          Length = 819

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISD 424
           FVR L +ET    L  +FS +G +EE  V  D
Sbjct: 298 FVRNLSYETKESELEPVFSPFGKIEEIHVAFD 329

to top

>BOULE_DROME (Q24207) Protein boule|
          Length = 228

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDRPPAAPG 445
           FV G+  +T    L  +FSAYG ++   +I DR   + G
Sbjct: 36  FVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKG 74

to top

>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           +V+ L  E   D L+  F  YGD+  AVV+ D+
Sbjct: 228 YVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ 260

to top

>HAM1_METCA (Q602P0) HAM1 protein homolog|
          Length = 201

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 439 SGRWSVADDHGLLEVAVGGEDGAERVGVGLPAEAPDEELAQGRVAVGG 296
           SG  ++ADD GL   A+GGE G        PA + D+ + +   A+ G
Sbjct: 62  SGLPAIADDSGLEVDALGGEPGVHSARYAGPAASDDDNIDRLLAALDG 109

to top

>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)|
          Length = 289

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDRPPAAPG 445
           FV G+    N   +R+ F  YG ++E  +I+DR   + G
Sbjct: 39  FVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKG 77

to top

>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 295

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDRPPAAPG 445
           FV G+    +   +R+ F+ YG ++E  +I+DR   + G
Sbjct: 43  FVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKG 81

to top

>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1) (DAZ homolog)
           (SPGY-like-autosomal)
          Length = 295

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDRPPAAPG 445
           FV G+    +   +R+ F+ YG ++E  +I+DR   + G
Sbjct: 43  FVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKG 81

to top

>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 298

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDRPPAAPG 445
           FV G+    +   +R+ F+ YG ++E  +I+DR   + G
Sbjct: 43  FVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKG 81

to top

>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP|
           A1) (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           FV G+  +T  D LR  F  YG +E   +++DR
Sbjct: 108 FVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDR 140

to top

>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           +V  L W+ ++  L  +FS +G +  A V+SDR
Sbjct: 152 YVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDR 184

to top

>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEE 406
           FVR L + ++ + L  +FSAYG L E
Sbjct: 403 FVRNLSYTSSEEDLEKLFSAYGPLSE 428

to top

>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 353

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISD 424
           F+ GL W+T    L+  FS +GD+ +  +  D
Sbjct: 98  FIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLD 129

to top

>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 296

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDRPPAAPG 445
           FV G+    +   +R  F+ YG ++E  +I+DR   + G
Sbjct: 43  FVGGIDVRMDETEIRGFFARYGSVKEVKIITDRTGVSKG 81

to top

>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISD 424
           F+R + +    D  R +FS YG+LEE  +  D
Sbjct: 333 FLRNILYTATEDDFRKLFSPYGELEEVHIAVD 364

to top

>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           +V  L W  + D+L  +FS  G + +A V+ DR
Sbjct: 191 YVGNLAWGVDQDALETLFSEQGKVVDAKVVYDR 223

to top

>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           +V  L W  + D+L  +FS  G + +A V+ DR
Sbjct: 197 YVGNLAWGVDQDALETLFSEQGKVVDAKVVYDR 229

to top

>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1|
          Length = 769

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEE 406
           FVR L + T S+SL + FS YG ++E
Sbjct: 224 FVRNLAFITTSESLSSHFSTYGRIDE 249

to top

>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 329 FVRGLGWETNSDSLRAIFSAYGDLEEAVVISDR 427
           +V  L W+ ++  L  +FS +G + EA V+ DR
Sbjct: 247 YVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDR 279

to top

>HAM1_GLOVI (Q7NN81) HAM1 protein homolog|
          Length = 195

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 439 SGRWSVADDHGLLEVAVGGEDG 374
           +G WSV DD GL   A+GG  G
Sbjct: 60  TGEWSVGDDSGLAVDALGGAPG 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,975,840
Number of Sequences: 219361
Number of extensions: 500578
Number of successful extensions: 2049
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2047
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result