>SUR2_CAEEL (Q10669) Protein sur-2|
          Length = 1587

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
 Frame = +1

Query: 235  HALQHH---RQGRRGHAGLRARQQGHRPRRQALHRPVP---------PREAGAVQPGVRG 378
            H LQHH    Q          +QQ + P +Q L   +P         P+  GAV     G
Sbjct: 1450 HHLQHHTSTHQMMDTSQHQTIQQQSNHPTQQQLQHQIPNMSMHQQMGPQYPGAVFHHPSG 1509

Query: 379  RVGAVDGEQGRGQGLPLHPHGQH 447
             VG V  + G G  +  HPH  H
Sbjct: 1510 PVGHVPMQYGMGHHMQQHPHLPH 1532

>NBEA_DROME (Q9W4E2) Protein neurobeachin (Protein rugose) (A-kinase anchor|
            protein 550) (AKAP 550) (dAKAP550)
          Length = 3584

 Score = 32.0 bits (71), Expect = 0.83
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +1

Query: 223  LAQGHALQHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQ-PGVRGRVGAVDG 399
            ++  H   HH Q ++  AG+  +QQ H     +     P  E   V+ P   G  G+  G
Sbjct: 2405 ISDKHDPSHHNQQQQQQAGIIGQQQQHGSLGHSERGDKPDSEISVVRVPDGYGGAGSGGG 2464

Query: 400  -EQGRGQGLP 426
               G+GQG+P
Sbjct: 2465 VNSGQGQGVP 2474

>RLUB_XANCP (Q8P8M6) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 492

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +1

Query: 328 RPVPPREAGAVQPGV----RGRVGAVDGEQGRGQGLPLHPHG 441
           RP   +  G  +PG     RG  G     QG+GQG   HP+G
Sbjct: 414 RPYAKKGPGGARPGAGGQGRGAAGGQGQSQGQGQGQRKHPYG 455

>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 24/86 (27%)
 Frame = +1

Query: 229 QGHALQH---------HRQG------RRGHAGLRARQQGHRPRRQA-LHRPVPPREAGAV 360
           +GHA +H         HR G       RGH     RQQGH P      HR     E G  
Sbjct: 590 EGHAEEHQTEVPGHHQHRMGDTDTSAERGHPASSPRQQGHPPEDTVHHHRGSLKEEVGPE 649

Query: 361 QPGVRG--------RVGAVDGEQGRG 414
            PG  G        R G+ + E+ +G
Sbjct: 650 SPGPAGVKDGSRVKRGGSEEEEEQKG 675

>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (Peripheral benzodiazepine receptor-interacting
            protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1)
          Length = 1846

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 316  QALHRPVPPREAGAVQPGVRG-RVGAVDGEQGR 411
            QA  RPVPPRE G++ P + G RVG   G +GR
Sbjct: 1429 QASARPVPPRERGSL-PVIEGTRVGQEPGGRGR 1460

>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
 Frame = +1

Query: 328 RPVPPREAGAVQPGVRGRVGAVDGEQGR----------GQGLPLHPHG 441
           RP   +  G  +PG  G VGA  G  GR          GQG   HP+G
Sbjct: 414 RPYAKKGPGGARPGTGGPVGARSGGPGRGAGGGQGQSQGQGQRKHPYG 461

>GALT6_BOVIN (Q5EA41) Polypeptide N-acetylgalactosaminyltransferase 6 (EC|
           2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase
           6) (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc
           transferase 6) (GalNAc-T6) (pp-GaNTase 6)
          Length = 622

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 158 CLAVRDGEVVLAPVNPKDETQHWL 229
           CL  +D + V+A  NP D  QHWL
Sbjct: 597 CLTSKDKKPVMATCNPSDPHQHWL 620

>L2MU_ADE02 (P14269) Late L2 mu core protein precursor (pMu) (Protein X) (pX)|
           (11 kDa core protein)
          Length = 79

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 247 HHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQPGVRGRVGAVDG 399
           H R+G  GH      ++ H  RR+A HR +       + P +   +GAV G
Sbjct: 18  HRRRGMAGHGLTGGMRRAHHRRRRASHRRMRGGILPLLIPLIAAAIGAVPG 68

>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF|
          Length = 1097

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = +1

Query: 289 RQQGHRPRRQALHRPVPPREAGAVQPGVRGRVGAVDGEQGRGQGLPLHPHGQHTRLGLTP 468
           +QQ  +PR   + RP PP  A   +PG   +V    G    G+  P+ P       G  P
Sbjct: 73  QQQQQQPRPSPMARPGPPPPAAMARPGGPPQVSQPGGFPPVGR--PVAPPSNQPPFGGRP 130

Query: 469 ST 474
           ST
Sbjct: 131 ST 132

>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 3)
          Length = 437

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 24/65 (36%), Positives = 27/65 (41%)
 Frame = +1

Query: 232 GHALQHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQPGVRGRVGAVDGEQGR 411
           GH   HH +GRRG    R R QG    R            GA  P VR R+    GE   
Sbjct: 230 GHGDGHHLEGRRG----RPRPQGREAGR------------GAHPPQVRARIYLAAGE--- 270

Query: 412 GQGLP 426
            +GLP
Sbjct: 271 ARGLP 275



 Score = 28.5 bits (62), Expect = 9.2
 Identities = 22/49 (44%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +1

Query: 244 QHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAV---QPGVRGR 381
           Q H+  R  HA  R  Q G  PRRQ L     PR AG     QP  RGR
Sbjct: 134 QQHQHPRGRHASDRV-QDGAHPRRQRLRE--QPRHAGRPRRRQPPRRGR 179

>CUTI2_ASPOR (Q2TZY7) Probable cutinase 2 precursor (EC 3.1.1.74) (Cutin|
           hydrolase 2)
          Length = 221

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
 Frame = +2

Query: 35  IRHALLAAKMFGFGHHHKDQAPAASGPNQIFKIYCRASEDYCLAVRDGEVVLAPV----- 199
           ++  +    +FG+  + ++    A+ P    K+YC   +  C    DG +++ P      
Sbjct: 143 VKEKIKGVVLFGYTRNAQEHGQIANFPKDKVKVYCAVGDMVC----DGTLIVGPAHFTYL 198

Query: 200 -NPKDETQHWLKDMRF 244
            N  + TQ  L  +RF
Sbjct: 199 GNTGEATQFLLGYLRF 214

>AFSK_STRGR (P54742) Serine/threonine protein kinase afsK (EC 2.7.11.1)|
          Length = 807

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +1

Query: 43  RSPRRQDVRVRAPPQGPGAG 102
           R PR +  R+RA PQGPGAG
Sbjct: 305 RPPRPRPRRLRAAPQGPGAG 324

>VE2_BPV3 (Q8BDD6) Regulatory protein E2|
          Length = 414

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 265 RGHAGLRARQ-QGHRPRRQALHRPVPPREAGAVQPGVRGRVGAVDGEQGRGQGLPLHPHG 441
           R  +  R+R   G   R +A H  VP +E G   PG  GR G+ D +QG G   P  P  
Sbjct: 250 RSRSRSRSRSPSGSHSRPRAPH--VPDQETGR-PPGGGGRRGSRDQQQGPGGPAPPSPGE 306

Query: 442 QHTRLG 459
             TR G
Sbjct: 307 VGTRSG 312

>PLSX_DEIRA (Q46578) Fatty acid/phospholipid synthesis protein plsX|
          Length = 360

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +1

Query: 241 LQHHRQGRRGHAGLRARQQGHRPRRQ---ALHRPVPPREAG-AVQPGVRGRVG 387
           L+     R   AGL   +Q  RPRRQ   A  RP P   AG A   GVRG  G
Sbjct: 298 LRREHLDRGAGAGLYRPRQRRRPRRQKRRAACRPRPRSAAGRAPGSGVRGAAG 350

>ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens 1 protein)|
            (Zona occludens 1 protein) (Tight junction protein 1)
          Length = 1745

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 319  ALHRPVP-PREAGAVQPGVRGRVGAVDGEQG-RGQGLPLHPHGQHTRL 456
            +L  P P P  + A QPG  G   A     G RG+G PL PH    ++
Sbjct: 955  SLEEPAPAPPTSHASQPGCLGAPSAEAAHVGLRGEGPPLPPHADPAKV 1002

>YPE2_RHORU (P23139) Hypothetical 25.8 kDa protein in petC 3'region|
          Length = 238

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
 Frame = +1

Query: 232 GHALQHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPRE------AGAVQPGVRGRVGAV 393
           G   QH   G+R     R R  G     ++ H P P R       A  + PG +  + A+
Sbjct: 128 GRPCQHGPSGQRLAGRSRRRGSG-----RSGHSPSPGRHLSVHGGAAVLDPGRKQSLSAM 182

Query: 394 DGEQGRGQGLPLHPHGQHTR 453
                   GLP H H QH R
Sbjct: 183 --------GLPRHRHDQHAR 194

>PROA_SERMA (P17857) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)|
           (Glutamate-5-semialdehyde dehydrogenase)
           (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA
           dehydrogenase)
          Length = 417

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 3/111 (2%)
 Frame = +2

Query: 98  PAASGPNQIFKIYCRASEDYCLAVRDGEVVLAPVNPKDETQHWLK-DMRFSTTVKDEEGM 274
           PA S       +   A+E+    ++ G   + PVN +D    WL  D+        ++ +
Sbjct: 271 PALSAKMAAAGVTLHAAENALPLLQGGPATVVPVNAEDYDDEWLSLDLNVLLVDDIDQAI 330

Query: 275 PAFAL--VNKATGLAVKHSIGQSHPVKLVPFNPAYEDASVLWTESKDVGKG 421
                   N +  +  +      H V+ V  +  Y +AS  +T+    G G
Sbjct: 331 DHIRTHGTNHSDAILTRSLSSAEHFVRAVDSSAVYVNASTRFTDGGQFGLG 381

>E74EF_DROVI (Q7M3M6) Ecdysone-induced protein 74EF (ETS-related protein E74A)|
          Length = 873

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +1

Query: 229 QGHALQHHRQGRRGHAGLRARQQGH---RPRRQALHRPVPPREAGAVQPGVRGRVGAVDG 399
           Q H+LQH +Q ++ +A  + +Q  H   + ++Q LH     ++    Q   + ++ A   
Sbjct: 616 QHHSLQHQQQQQQSYAPQQQQQLSHHQQQQQQQQLHHQQQQQQQQQQQQHSQSQLAAAQL 675

Query: 400 EQGRGQGLPLHPHGQHTRL 456
                  L   PH  H+ +
Sbjct: 676 ASTHPHQLHSTPHDTHSTI 694

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +1

Query: 232  GHALQHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQPGVRGR 381
            G      R+  RG    R + + HRP     H   P R  G V PGV  R
Sbjct: 2197 GDLPSREREQERG----RPKDRKHRPHHHHHHHHHPGRGPGRVSPGVSAR 2242

>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6|
          Length = 278

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 283 RARQQGHRPRRQALHRPVPPREAGAVQPGVRGRVG--AVDGEQG 408
           RAR+Q   P  QAL +  PP   G   PG  G  G   VDG+ G
Sbjct: 71  RARRQAALPDCQALAKNCPPGPPG--PPGAPGAAGEPGVDGDAG 112

>GALT6_MOUSE (Q8C7U7) Polypeptide N-acetylgalactosaminyltransferase 6 (EC|
           2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase
           6) (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc
           transferase 6) (GalNAc-T6) (pp-GaNTase 6)
          Length = 622

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 158 CLAVRDGEVVLAPVNPKDETQHWL 229
           CL  +D +  +AP NP+D  Q WL
Sbjct: 597 CLTSQDKKPAMAPCNPRDPYQLWL 620


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,295,045
Number of Sequences: 219361
Number of extensions: 1039055
Number of successful extensions: 4587
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4580
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)