>LYAM3_MOUSE (Q01102) P-selectin precursor (Granule membrane protein 140)|
           (GMP-140) (PADGEM) (Leukocyte-endothelial cell adhesion
           molecule 3) (LECAM3) (CD62P antigen)
          Length = 768

 Score = 37.0 bits (84), Expect = 0.019
 Identities = 24/80 (30%), Positives = 30/80 (37%)
 Frame = +2

Query: 98  PCRSSRSHCQSLET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWT 277
           P +     CQSLE  P G MA  +P+A            +P      S+T    G G W 
Sbjct: 254 PPKCDAVQCQSLEAPPHGTMACMHPIAAFAYDSSCKFECQPGYRARGSNTLHCTGSGQW- 312

Query: 278 LWTRTSAPASSPTARWCRPP 337
                S P  +  A  C PP
Sbjct: 313 -----SEPLPTCEAIACEPP 327

>DIP2C_HUMAN (Q9Y2E4) Disco-interacting protein 2 homolog C|
          Length = 1556

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +3

Query: 3   TTPASQQSQTLLAGSGRQHIDREDPTN*HLARHVVPPDPTANRWRHSQQAAWPR 164
           TT  +  S T   GSG  H   +     H+  H  PPD T     HS Q   P+
Sbjct: 172 TTSTTSSSSTQSGGSGAAHRLADVMAQTHIENHSAPPDVTTYTSEHSIQVERPQ 225

>Y4HP_RHISN (P50360) Hypothetical 61.7 kDa protein y4hP|
          Length = 552

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
 Frame = +1

Query: 121 LPIVGDIASRLHGQEKPRGDDTTPPAPARVLGTVASRWRELHGENSWDGLLDPL------ 282
           +P+   I + +   E+  GDDTT P  AR   T    W  +  +  + G   P       
Sbjct: 247 MPVFDLIEAHVFAAERLHGDDTTIPIQARDKCTTGRIWTYVCDDRPFGGTAPPAAIYYAS 306

Query: 283 ----DPHLRSSIISYGEMVQA-AYDGF 348
                 H +  +  YG ++Q+  Y+GF
Sbjct: 307 SDRRGEHPQKHLAGYGGILQSDCYNGF 333

>CIC_HUMAN (Q96RK0) Protein capicua homolog|
          Length = 1608

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +2

Query: 104 RSSRSHCQS-LET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWTL 280
           RSS +HC+  L+  P G      PVA         +SS   PA  ++S A +  +GS T 
Sbjct: 500 RSSFTHCRPPLDPEPPG--PPDPPVAFGKGYGSAPSSSASSPASSSASAATSFSLGSGTF 557

Query: 281 WTRTSAPASSPTARWCRPPTTG 346
             + S   S  TA   RPP  G
Sbjct: 558 KAQESGQGS--TAGPLRPPPPG 577

>CIC_MOUSE (Q924A2) Protein capicua homolog|
          Length = 1606

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +2

Query: 104 RSSRSHCQ-SLET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWTL 280
           RSS +HC+ +L+  P G     +P A          SS   PA  + S + +  +GS T 
Sbjct: 500 RSSFTHCRPTLDPEPPG---PPDPPAAFSKGYGPTPSSSSSPASTSVSVSTSFSLGSGTF 556

Query: 281 WTRTSAPASSPTARWCRPPTTG 346
            T+ S   S  TA   RPP  G
Sbjct: 557 KTQESGQGS--TAVPLRPPPPG 576

>ARGD_SYNEL (P59322) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)|
          Length = 412

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 348 EPVVGGLHHLAVGDDAGAEVRVQRVQEPIPRVLAVELAPPAGHG 217
           +P+V G  ++   D    E  V  + +P P+V A+ L P  G G
Sbjct: 163 DPLVPGFAYVPYNDLGALEALVASLDQPQPQVAAILLEPLQGEG 206

>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 551

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 54  QHIDREDPTN*HLARHVVPPDPTANRWRHSQQAAWPRETPWRRHD 188
           +H    D    HL+RHV P D   ++ R+   +    +   RRHD
Sbjct: 448 RHDSHRDHERHHLSRHVRPSDEGESKCRYEAHSHTRHDEHTRRHD 492

>ARGD_ANASP (P54752) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)|
          Length = 427

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 348 EPVVGGLHHLAVGDDAGAEVRVQRVQEPIPRVLAVELAPPAGHG 217
           +P+V G H++   D +  E  +  + E   RV A+ + P  G G
Sbjct: 178 DPLVPGFHYVNYNDISAVEAAISELDEGDYRVAAILIEPLQGEG 221

>MYCL1_MOUSE (P10166) L-myc-1 proto-oncogene protein|
          Length = 368

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +2

Query: 215 EPWPAGGASSTARTRGMGSWTLWTRTSAPASSPTARW 325
           EPWP GGA   A +RG      W R  A        W
Sbjct: 62  EPWPGGGAGDEAESRGHSK--AWGRNYASIIRRDCMW 96

>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 348

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 13/113 (11%)
 Frame = +2

Query: 38  RRQW*AAHRSRRSHELTPRAPCRSSR----SHCQSLET*PAGCMAKRNPVATTXXXXXXX 205
           RR     HR R S   T  +   SS     S   S  T  A    +  P           
Sbjct: 149 RRHRKPGHRRRTSTTSTSASSGSSSAGSTGSRWTSASTRGASTSPRATPPTWQRSTSMPP 208

Query: 206 ASSEPWP--------AGGAS-STARTRGMGSWTLWTRTSAPASSPTARWCRPP 337
           + + PWP        AG AS +T RTR   SW+  +  SA  ++   R   PP
Sbjct: 209 SRASPWPRYGRRWRTAGTASRTTTRTRTGRSWSTGSIVSAAPTAMPRRSTSPP 261

>SYWM_CAEEL (P46579) Probable tryptophanyl-tRNA synthetase, mitochondrial (EC|
           6.1.1.2) (Tryptophan--tRNA ligase) (TrpRS)
          Length = 650

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -2

Query: 160 GHAACWLCLQRLAVG--SGGTTWRARC 86
           GH  CW C+Q  AV   S  +T  ARC
Sbjct: 270 GHLFCWTCIQEHAVAATSSASTSSARC 296

>IGHE_MOUSE (P06336) Ig epsilon chain C region|
          Length = 421

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = +2

Query: 65  SRRSHELTPRAPCRSSRSHCQSLET*PAGCMAKR---NPVATTXXXXXXXASSEPWPAGG 235
           S R+ +L P  PC+ + S          GC+ K    NPV  T        S+  +PA G
Sbjct: 1   SIRNPQLYPLKPCKGTASMT-------LGCLVKDYFPNPVTVTWYSDSLNMSTVNFPALG 53

Query: 236 ASSTARTRGMGSW 274
           +     T  + SW
Sbjct: 54  SELKVTTSQVTSW 66

>ARGD_PROMA (Q7VAS9) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)|
          Length = 395

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 354 GVEPVVGGLHHLAVGDDAGAEVRVQRVQEPIPRVLAVELAPPAGHG 217
           G EP+V G    +  D    +   + +++  PRV A+ + P  G G
Sbjct: 144 GFEPLVEGFEFFSFNDSNSVQDLYENLEKDEPRVAAILIEPIQGEG 189

>DOCK4_MOUSE (P59764) Dedicator of cytokinesis protein 4|
          Length = 1978

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
 Frame = +1

Query: 37   SPAVVGSTS--IEKIPRINTSRAMSF----------LPIPLPIVGDIASRLHGQEKPRGD 180
            SP + GS S  I  + R +TS    F          +P+P+P+   + S    +E  R +
Sbjct: 1849 SPVLSGSYSSGISSLSRCSTSETSGFENQANEQSVPVPVPVPVPVPVPSFSGSEEPVRKE 1908

Query: 181  DTTPP 195
              TPP
Sbjct: 1909 SKTPP 1913

>E2F3_MOUSE (O35261) Transcription factor E2F3 (E2F-3)|
          Length = 457

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -1

Query: 230 LLATVPRTRAGAGGVVSSPRGFSWPCSLLAMSPTIGSGIGRNDMAREVLIRG 75
           LL +VP T   A  + ++P+G S    LL   P  G G G    A+  L  G
Sbjct: 80  LLPSVPGTEPAASSLYTTPQGPSSRVGLLQQPPAPGRGGGGGPPAKRRLELG 131

>CEP68_PONPY (Q5RCQ2) Centrosomal protein of 68 kDa (Cep68 protein)|
          Length = 751

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 209 SSEPWPAGGASSTARTRGMGSWTLWTRTSAPASSPTARW-CRPP 337
           S + WP+G         G+ SW+  T T     S  ARW CR P
Sbjct: 368 SLKQWPSGVPQKQGGM-GLASWSQLTSTPRAPGSRDARWECREP 410

>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC 3.4.22.-)|
            (p150); RNA-directed RNA polymerase/helicase (EC
            2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 306  DAGAEVRVQRVQEPIPRVLAVELAPP 229
            DAGA   ++ V   I RV+AVE APP
Sbjct: 1593 DAGALAELKEVPAGIDRVVAVEQAPP 1618

>POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Protease (EC 3.4.22.-)|
            (p150); RNA-directed RNA polymerase/helicase (EC
            2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 306  DAGAEVRVQRVQEPIPRVLAVELAPP 229
            DAGA   ++ V   I RV+AVE APP
Sbjct: 1594 DAGALAELKEVPAGIDRVVAVEQAPP 1619

>ROK1_ASPOR (Q2UQW3) ATP-dependent RNA helicase rok1 (EC 3.6.1.-)|
          Length = 725

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
 Frame = +1

Query: 1   TQHQLANRAKLYSPAVVGSTSIEK--------IPRINTSRAMSFLPIPLPIVGDIASRLH 156
           T+ QL     L     +G +  E+        +    + + +SFL   +P++  I    H
Sbjct: 203 TEVQLGTLPLLLGDRTIGQSKTEEPVEPDLLVVAPTGSGKTLSFL---IPVINKIVRHHH 259

Query: 157 GQEKPRGDDTTPPAPARVLGT 219
           GQ++ RG      AP + L +
Sbjct: 260 GQQEERGIFAVVVAPTKELAS 280

>OPGD1_RALSO (Q8XUX6) Glucans biosynthesis protein D 1 precursor|
          Length = 535

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 227 LATVPRTRAGAGGVVSSP-RGFSW 159
           LA V  TR G GG+V  P R FSW
Sbjct: 424 LARVVATRTGIGGIVGQPRRHFSW 447

>YL585_MIMIV (Q5UP53) Hypothetical protein L585|
          Length = 107

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 254 FSPWSSRHLLATVPRTRAGAGGVVSSPRG 168
           + PW+ R LL      RAG+G V S+P G
Sbjct: 65  YRPWAGRSLLVAPAIYRAGSGPVGSTPWG 93

>GAK_HUMAN (O14976) Cyclin G-associated kinase (EC 2.7.11.1)|
          Length = 1311

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 224  PAGGASSTARTRGMGSWTLWTRTSAPASSPT 316
            P+   +S++    +G W  WT T+A A +PT
Sbjct: 1021 PSKMTASSSNPDLLGGWAAWTETAASAVAPT 1051


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,456,873
Number of Sequences: 219361
Number of extensions: 1288274
Number of successful extensions: 4234
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 4088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4230
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)