ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast79a08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 224 bits (113), Expect = 2e-55 Identities = 125/129 (96%) Strand = Plus / Plus Query: 220 ggggaagctcccgcggaagcgcttctaccgggcgcgcgcgcacagcaacccgctcagcga 279 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 7129935 ggggaagctcccgcggaagcggttctaccgggcgcgcgcgcacagcaacccgctcagcga 7129994 Query: 280 ctcgcacttcccgatcccgatatcgcccgacgacgtcgacctctcgcagcactacccgcg 339 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 7129995 ctcgcacttcccgatcccgatatcgcccgacgaggtagacctctcgcagcactacccgcg 7130054 Query: 340 ctacttccc 348 |||||||| Sbjct: 7130055 gtacttccc 7130063 Score = 73.8 bits (37), Expect = 5e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 404 cggatccgcttcgctgacgtcgggtgcgggtttggtgggctgctcgtcgggctctcgccg 463 |||||||||||||| ||||| ||||| ||||| || |||||||||||||| ||||| || Sbjct: 7130107 cggatccgcttcgcggacgttgggtgtgggttcggcgggctgctcgtcggcctctctacg 7130166 Query: 464 ctcttcccg 472 ||||||||| Sbjct: 7130167 ctcttcccg 7130175 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 379 cgggggcgccgaggcggaggcgcccc 404 ||||||||||||| |||||||||||| Sbjct: 20968984 cgggggcgccgagccggaggcgcccc 20969009
>dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0080E19 Length = 152755 Score = 224 bits (113), Expect = 2e-55 Identities = 125/129 (96%) Strand = Plus / Plus Query: 220 ggggaagctcccgcggaagcgcttctaccgggcgcgcgcgcacagcaacccgctcagcga 279 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 150722 ggggaagctcccgcggaagcggttctaccgggcgcgcgcgcacagcaacccgctcagcga 150781 Query: 280 ctcgcacttcccgatcccgatatcgcccgacgacgtcgacctctcgcagcactacccgcg 339 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 150782 ctcgcacttcccgatcccgatatcgcccgacgaggtagacctctcgcagcactacccgcg 150841 Query: 340 ctacttccc 348 |||||||| Sbjct: 150842 gtacttccc 150850 Score = 73.8 bits (37), Expect = 5e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 404 cggatccgcttcgctgacgtcgggtgcgggtttggtgggctgctcgtcgggctctcgccg 463 |||||||||||||| ||||| ||||| ||||| || |||||||||||||| ||||| || Sbjct: 150894 cggatccgcttcgcggacgttgggtgtgggttcggcgggctgctcgtcggcctctctacg 150953 Query: 464 ctcttcccg 472 ||||||||| Sbjct: 150954 ctcttcccg 150962
>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0068B06 Length = 143712 Score = 224 bits (113), Expect = 2e-55 Identities = 125/129 (96%) Strand = Plus / Plus Query: 220 ggggaagctcccgcggaagcgcttctaccgggcgcgcgcgcacagcaacccgctcagcga 279 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 7346 ggggaagctcccgcggaagcggttctaccgggcgcgcgcgcacagcaacccgctcagcga 7405 Query: 280 ctcgcacttcccgatcccgatatcgcccgacgacgtcgacctctcgcagcactacccgcg 339 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 7406 ctcgcacttcccgatcccgatatcgcccgacgaggtagacctctcgcagcactacccgcg 7465 Query: 340 ctacttccc 348 |||||||| Sbjct: 7466 gtacttccc 7474 Score = 73.8 bits (37), Expect = 5e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 404 cggatccgcttcgctgacgtcgggtgcgggtttggtgggctgctcgtcgggctctcgccg 463 |||||||||||||| ||||| ||||| ||||| || |||||||||||||| ||||| || Sbjct: 7518 cggatccgcttcgcggacgttgggtgtgggttcggcgggctgctcgtcggcctctctacg 7577 Query: 464 ctcttcccg 472 ||||||||| Sbjct: 7578 ctcttcccg 7586
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 373 cggggacgggggcgccgaggcggagg 398 ||||||||| |||||||||||||||| Sbjct: 4976379 cggggacggaggcgccgaggcggagg 4976354 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 agcggcgccaacggcggcgggcag 211 ||||||| |||||||||||||||| Sbjct: 19595439 agcggcggcaacggcggcgggcag 19595462
>dbj|AP004739.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0090E14 Length = 161119 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 379 cgggggcgccgaggcggaggcgcccc 404 ||||||||||||| |||||||||||| Sbjct: 95908 cgggggcgccgagccggaggcgcccc 95933
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0049I08 Length = 144379 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 373 cggggacgggggcgccgaggcggagg 398 ||||||||| |||||||||||||||| Sbjct: 18068 cggggacggaggcgccgaggcggagg 18043
>dbj|AK119391.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-C10, full insert sequence Length = 3221 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 373 cggggacgggggcgccgaggcggagg 398 ||||||||| |||||||||||||||| Sbjct: 2850 cggggacggaggcgccgaggcggagg 2825
>ref|XM_962576.1| PREDICTED: Tribolium castaneum similar to CG2984-PA (LOC656020), mRNA Length = 1203 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 371 gacggggacgggggcgccgaggcgg 395 |||||| |||||||||||||||||| Sbjct: 232 gacgggcacgggggcgccgaggcgg 256
>emb|Y00966.1|HVPSA2 Hordeum vulgare pot. psaE mRNA Length = 610 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ccagcggcgccaacggcggcg 206 ||||||||||||||||||||| Sbjct: 97 ccagcggcgccaacggcggcg 117
>ref|XM_478374.1| Oryza sativa (japonica cultivar-group), mRNA Length = 420 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 agcggcgccaacggcggcgggcag 211 ||||||| |||||||||||||||| Sbjct: 258 agcggcggcaacggcggcgggcag 235
>gb|AY365117.2| Mycobacterium vanbaalenii strain PYR-1 phenanthree degradation pathway gene cluster, complete sequence Length = 37237 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 cgacgacgtcgacctctcgc 326 |||||||||||||||||||| Sbjct: 21056 cgacgacgtcgacctctcgc 21075
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 aggaccagcggcgccaacggcggc 205 |||||||||||||||| ||||||| Sbjct: 854036 aggaccagcggcgccagcggcggc 854059
>ref|XM_845400.1| PREDICTED: Canis familiaris similar to MAD homolog 7, transcript variant 3 (LOC490570), mRNA Length = 1293 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 cggggacgggggcgccgaggcgga 396 ||||| |||||||||||||||||| Sbjct: 264 cggggccgggggcgccgaggcgga 287
>ref|XM_856441.1| PREDICTED: Canis familiaris similar to MAD homolog 7, transcript variant 5 (LOC490570), mRNA Length = 1167 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 cggggacgggggcgccgaggcgga 396 ||||| |||||||||||||||||| Sbjct: 264 cggggccgggggcgccgaggcgga 287
>ref|XM_856415.1| PREDICTED: Canis familiaris similar to MAD homolog 7, transcript variant 4 (LOC490570), mRNA Length = 1539 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 cggggacgggggcgccgaggcgga 396 ||||| |||||||||||||||||| Sbjct: 264 cggggccgggggcgccgaggcgga 287
>emb|CR716051.2|CNS0GFGF Tetraodon nigroviridis full-length cDNA Length = 472 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 54 ctccggcggctcagctcgcagtcc 77 |||| ||||||||||||||||||| Sbjct: 114 ctcccgcggctcagctcgcagtcc 91
>gb|AY181861.1| Suaeda monodiana specimen-voucher Schuetze1229 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 632 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 gactcgtcgctccctgacctttcc 25 ||||||||||||| |||||||||| Sbjct: 67 gactcgtcgctccgtgacctttcc 90
>gb|AC135413.43| Medicago truncatula clone mth2-16n19, complete sequence Length = 92216 Score = 40.1 bits (20), Expect = 6.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 236 aagcgcttctaccgggcgcgcgcgcacagcaacccgctcagcgactcgcacttccc 291 ||||||||||| || || || || ||||||||||| ||||| ||||| || ||||| Sbjct: 41597 aagcgcttctatcgagcacgagcacacagcaaccctctcagtgactctcatttccc 41542
>emb|AL133174.15| Human DNA sequence from clone RP3-470L14 on chromosome 20 Contains the CSE1L gene for chromosome segregation 1 (yeast homolog)-like protein, the STAU gene for staufen RNA-binding protein (Drosophila), ARPC3 (actin related protein 2/3 complex,subunit 3, 21KDa) pseudogene and a CpG island, complete sequence Length = 113836 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 40071 gtgcgggtttggtgggctgc 40090
>gb|AF479035.1| Triticum aestivum proteinase inhibitor Rgpi9 mRNA, partial cds Length = 273 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 gctcagcgactcgcacttcc 290 |||||||||||||||||||| Sbjct: 147 gctcagcgactcgcacttcc 128
>emb|AL136601.2|HSM801575 Homo sapiens mRNA; cDNA DKFZp564J1516 (from clone DKFZp564J1516) Length = 2878 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 1204 gtgcgggtttggtgggctgc 1185
>gb|AE005901.1| Caulobacter crescentus CB15 section 227 of 359 of the complete genome Length = 11136 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cccgcgcggccttggccaga 176 |||||||||||||||||||| Sbjct: 4569 cccgcgcggccttggccaga 4550
>dbj|AK091405.1| Homo sapiens cDNA FLJ34086 fis, clone FCBBF3005320, highly similar to Homo sapiens staufen protein (STAU) mRNA Length = 2875 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 700 gtgcgggtttggtgggctgc 681
>gb|AF249300.1|AF249300 Mycobacterium sp. PYR-1 aldehyde dehydrogenase gene, complete cds Length = 1461 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 cgacgacgtcgacctctcgc 326 |||||||||||||||||||| Sbjct: 762 cgacgacgtcgacctctcgc 781
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 375 gggacgggggcgccgaggcggagg 398 ||||||||||||||| |||||||| Sbjct: 10799805 gggacgggggcgccgcggcggagg 10799828
>gb|AC109638.2| Homo sapiens BAC clone RP11-495B16 from 2, complete sequence Length = 104787 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tccctgacctttcccctcca 31 |||||||||||||||||||| Sbjct: 29168 tccctgacctttcccctcca 29149
>gb|AC087384.13| Homo sapiens chromosome 8, clone RP11-689G24, complete sequence Length = 110281 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 gctccctgacctttcccctccaac 33 |||||||||||||||| ||||||| Sbjct: 88395 gctccctgacctttcctctccaac 88372
>gb|AC104417.14| Homo sapiens chromosome 8, clone RP11-953B20, complete sequence Length = 186063 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 gctccctgacctttcccctccaac 33 |||||||||||||||| ||||||| Sbjct: 1203 gctccctgacctttcctctccaac 1180
>gb|DQ317418.1| Panicum miliaceum KNOTTED1 homeodomain protein (KN1) mRNA, partial cds Length = 1002 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 cagcggcgccaacggcggcg 206 |||||||||||||||||||| Sbjct: 156 cagcggcgccaacggcggcg 175
>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0512H04 Length = 151049 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 375 gggacgggggcgccgaggcggagg 398 ||||||||||||||| |||||||| Sbjct: 23528 gggacgggggcgccgcggcggagg 23551
>gb|AY546099.1| Homo sapiens staufen protein T4 variant mRNA, complete cds; alternatively spliced Length = 3286 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 1233 gtgcgggtttggtgggctgc 1214
>gb|AY529074.1| Homo sapiens staufen protein T5 variant mRNA, complete cds; alternatively spliced Length = 3110 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 1057 gtgcgggtttggtgggctgc 1038
>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0085I16 Length = 141701 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 375 gggacgggggcgccgaggcggagg 398 ||||||||||||||| |||||||| Sbjct: 136423 gggacgggggcgccgcggcggagg 136446
>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0580A11 Length = 174673 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 agcggcgccaacggcggcgggcag 211 ||||||| |||||||||||||||| Sbjct: 138783 agcggcggcaacggcggcgggcag 138806
>dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0041J06 Length = 138157 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 agcggcgccaacggcggcgggcag 211 ||||||| |||||||||||||||| Sbjct: 34089 agcggcggcaacggcggcgggcag 34112
>dbj|AK025519.1| Homo sapiens cDNA: FLJ21866 fis, clone HEP02379, highly similar to AF061938 Homo sapiens staufen protein (STAU) mRNA Length = 3194 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 1183 gtgcgggtttggtgggctgc 1164
>dbj|AK108901.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-F06, full insert sequence Length = 1265 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 375 gggacgggggcgccgaggcggagg 398 ||||||||||||||| |||||||| Sbjct: 201 gggacgggggcgccgcggcggagg 178
>emb|AJ338242.1|HSA338242 Homo sapiens genomic sequence surrounding NotI site, clone NR1-PK18RS Length = 761 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 ggtgacggggacgggggcgc 387 |||||||||||||||||||| Sbjct: 202 ggtgacggggacgggggcgc 221
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 gcggcgccaacggcggcgggcagc 212 ||||||||||||||||||| |||| Sbjct: 51312 gcggcgccaacggcggcggacagc 51289
>gb|AF061941.1|AF061941 Homo sapiens staufen protein (STAU) mRNA, alternatively spliced, complete cds Length = 3349 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 1347 gtgcgggtttggtgggctgc 1328
>gb|AF061940.1|AF061940 Homo sapiens staufen protein (STAU) mRNA, alternatively spliced, complete cds Length = 3142 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 1140 gtgcgggtttggtgggctgc 1121
>gb|AF061939.1|AF061939 Homo sapiens staufen protein (STAU) mRNA, alternatively spliced, complete cds Length = 3506 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 1504 gtgcgggtttggtgggctgc 1485
>gb|AF061938.1|AF061938 Homo sapiens staufen protein (STAU) mRNA, alternatively spliced, complete cds Length = 3217 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 1215 gtgcgggtttggtgggctgc 1196
>dbj|D63939.1|RATCEBPD Rattus norvegicus C/EBP-delta gene, promoter and 5'UTR Length = 736 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 ggcgccgaggcggaggcgcc 402 |||||||||||||||||||| Sbjct: 367 ggcgccgaggcggaggcgcc 386
>gb|BC095397.1| Homo sapiens staufen, RNA binding protein, homolog 1 (Drosophila), mRNA (cDNA clone MGC:110867 IMAGE:30528051), complete cds Length = 3217 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 1193 gtgcgggtttggtgggctgc 1174
>gb|BC050432.1| Homo sapiens staufen, RNA binding protein, homolog 1 (Drosophila), transcript variant T3, mRNA (cDNA clone MGC:54160 IMAGE:6047265), complete cds Length = 3253 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 1248 gtgcgggtttggtgggctgc 1229
>dbj|AB209561.1| Homo sapiens mRNA for staufen isoform b variant protein Length = 2259 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 1375 gtgcgggtttggtgggctgc 1356
>ref|NM_001037328.1| Homo sapiens staufen, RNA binding protein, homolog 1 (Drosophila) (STAU1), transcript variant T5, mRNA Length = 3540 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 1359 gtgcgggtttggtgggctgc 1340
>ref|NM_017454.2| Homo sapiens staufen, RNA binding protein, homolog 1 (Drosophila) (STAU1), transcript variant T1, mRNA Length = 3324 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 1143 gtgcgggtttggtgggctgc 1124
>ref|NM_017453.2| Homo sapiens staufen, RNA binding protein, homolog 1 (Drosophila) (STAU1), transcript variant T3, mRNA Length = 3688 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 1507 gtgcgggtttggtgggctgc 1488
>ref|NM_017452.2| Homo sapiens staufen, RNA binding protein, homolog 1 (Drosophila) (STAU1), transcript variant T2, mRNA Length = 3399 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 1218 gtgcgggtttggtgggctgc 1199
>ref|NM_004602.2| Homo sapiens staufen, RNA binding protein, homolog 1 (Drosophila) (STAU1), transcript variant T4, mRNA Length = 3522 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gtgcgggtttggtgggctgc 446 |||||||||||||||||||| Sbjct: 1341 gtgcgggtttggtgggctgc 1322 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,306,248 Number of Sequences: 3902068 Number of extensions: 2306248 Number of successful extensions: 47570 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47198 Number of HSP's gapped (non-prelim): 372 length of query: 496 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 474 effective length of database: 17,147,199,772 effective search space: 8127772691928 effective search space used: 8127772691928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
