| Clone Name | bast78h07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ151544.1| Hordeum vulgare subsp. vulgare cultivar Morex CBF12 (CBF12) gene, complete cds Length = 735 Score = 149 bits (75), Expect = 3e-33 Identities = 75/75 (100%) Strand = Plus / Plus Query: 105 atggacacggtccccgagcgtaactggaactcgccggcatccccgccgtcctccctcgag 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atggacacggtccccgagcgtaactggaactcgccggcatccccgccgtcctccctcgag 60 Query: 165 caggggatgccgtcg 179 ||||||||||||||| Sbjct: 61 caggggatgccgtcg 75
>gb|DQ095157.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo HvCBF12 (CBF12) gene, complete cds Length = 735 Score = 149 bits (75), Expect = 3e-33 Identities = 75/75 (100%) Strand = Plus / Plus Query: 105 atggacacggtccccgagcgtaactggaactcgccggcatccccgccgtcctccctcgag 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atggacacggtccccgagcgtaactggaactcgccggcatccccgccgtcctccctcgag 60 Query: 165 caggggatgccgtcg 179 ||||||||||||||| Sbjct: 61 caggggatgccgtcg 75
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 125 bits (63), Expect = 5e-26 Identities = 75/79 (94%) Strand = Plus / Minus Query: 98 agcggcaatggacacggtccccgagcgtaactggaactcgccggcatccccgccgtcctc 157 ||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 88973 agcggcaatggacacgggcccggagcgcaactggaactcgccggcatccccgccgtcctc 88914 Query: 158 cctcgagcaggggatgccg 176 |||||||||||||||||| Sbjct: 88913 gctcgagcaggggatgccg 88895 Score = 48.1 bits (24), Expect = 0.009 Identities = 27/28 (96%) Strand = Plus / Minus Query: 36 caccaaggcagcagacatcacggctcct 63 |||||||||||||| ||||||||||||| Sbjct: 89061 caccaaggcagcagccatcacggctcct 89034
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Minus Query: 138 ccggcatccccgccgtcctccc 159 |||||||||||||||||||||| Sbjct: 1885333 ccggcatccccgccgtcctccc 1885312
>ref|XM_876258.1| PREDICTED: Bos taurus similar to tumor protein p53 binding protein, 1, transcript variant 7 (LOC509111), mRNA Length = 2529 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 tcaccaaggcagcagacatca 55 ||||||||||||||||||||| Sbjct: 1279 tcaccaaggcagcagacatca 1299
>ref|XM_865493.1| PREDICTED: Bos taurus similar to tumor protein p53 binding protein, 1, transcript variant 2 (LOC509111), mRNA Length = 2857 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 tcaccaaggcagcagacatca 55 ||||||||||||||||||||| Sbjct: 1619 tcaccaaggcagcagacatca 1639
>ref|XM_876133.1| PREDICTED: Bos taurus similar to tumor protein p53 binding protein, 1, transcript variant 6 (LOC509111), mRNA Length = 2274 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 tcaccaaggcagcagacatca 55 ||||||||||||||||||||| Sbjct: 1619 tcaccaaggcagcagacatca 1639
>ref|XM_876071.1| PREDICTED: Bos taurus similar to tumor protein p53 binding protein, 1, transcript variant 5 (LOC509111), mRNA Length = 1937 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 tcaccaaggcagcagacatca 55 ||||||||||||||||||||| Sbjct: 1282 tcaccaaggcagcagacatca 1302
>ref|XM_875993.1| PREDICTED: Bos taurus similar to tumor protein p53 binding protein, 1, transcript variant 4 (LOC509111), mRNA Length = 2532 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 tcaccaaggcagcagacatca 55 ||||||||||||||||||||| Sbjct: 1282 tcaccaaggcagcagacatca 1302
>ref|XM_875851.1| PREDICTED: Bos taurus similar to tumor protein p53 binding protein, 1, transcript variant 3 (LOC509111), mRNA Length = 1912 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 tcaccaaggcagcagacatca 55 ||||||||||||||||||||| Sbjct: 662 tcaccaaggcagcagacatca 682
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 42.1 bits (21), Expect = 0.57 Identities = 24/25 (96%) Strand = Plus / Plus Query: 119 cgagcgtaactggaactcgccggca 143 |||||| |||||||||||||||||| Sbjct: 128867 cgagcggaactggaactcgccggca 128891
>emb|AL606918.9| Mouse DNA sequence from clone RP23-327O13 on chromosome 4, complete sequence Length = 192787 Score = 42.1 bits (21), Expect = 0.57 Identities = 24/25 (96%) Strand = Plus / Plus Query: 32 cattcaccaaggcagcagacatcac 56 ||||||||||||||||||| ||||| Sbjct: 21577 cattcaccaaggcagcagatatcac 21601
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 gccggcatccccgccgtcct 156 |||||||||||||||||||| Sbjct: 2112058 gccggcatccccgccgtcct 2112039
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 cggcatccccgccgtcctcc 158 |||||||||||||||||||| Sbjct: 4840528 cggcatccccgccgtcctcc 4840509
>ref|XM_367232.1| Magnaporthe grisea 70-15 hypothetical protein (MG07157.4) partial mRNA Length = 1992 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 136 cgccggcatccccgccgtc 154 ||||||||||||||||||| Sbjct: 954 cgccggcatccccgccgtc 972
>emb|CR730855.2|CNS0GQVG Tetraodon nigroviridis full-length cDNA Length = 1455 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 cagtcaactagccaagcag 86 ||||||||||||||||||| Sbjct: 72 cagtcaactagccaagcag 90
>emb|CR724559.2|CNS0GM0L Tetraodon nigroviridis full-length cDNA Length = 1461 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 cagtcaactagccaagcag 86 ||||||||||||||||||| Sbjct: 77 cagtcaactagccaagcag 95
>gb|AY359010.1| Homo sapiens clone DNA59767 KLK5 (UNQ570) mRNA, complete cds Length = 1570 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 86 gaaataaggtgcagcggcaatgg 108 |||||||||||||||||| |||| Sbjct: 335 gaaataaggtgcagcggccatgg 357
>ref|NM_012427.3| Homo sapiens kallikrein 5 (KLK5), mRNA Length = 1528 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 86 gaaataaggtgcagcggcaatgg 108 |||||||||||||||||| |||| Sbjct: 267 gaaataaggtgcagcggccatgg 289
>emb|AL034348.5|HS84D21 Human DNA sequence from clone RP1-84D21 on chromosome 6q15-16.3, complete sequence Length = 120514 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 tagccaagcagaaataagg 94 ||||||||||||||||||| Sbjct: 41062 tagccaagcagaaataagg 41044
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 127 actggaactcgccggcatc 145 ||||||||||||||||||| Sbjct: 239308 actggaactcgccggcatc 239326
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 139 cggcatccccgccgtcctc 157 ||||||||||||||||||| Sbjct: 60111 cggcatccccgccgtcctc 60129
>gb|AY279381.1| Homo sapiens kallikrein 5 splice variant 2 (KLK5) mRNA, complete cds; alternatively spliced Length = 1438 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 86 gaaataaggtgcagcggcaatgg 108 |||||||||||||||||| |||| Sbjct: 177 gaaataaggtgcagcggccatgg 199
>emb|AJ505006.1|POL505006 Sorangium cellulosum spiG gene (partial), spiH gene, spiI gene, spiJ gene, spiK gene, spiL gene and spiZ gene Length = 48000 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 134 ctcgccggcatccccgccg 152 ||||||||||||||||||| Sbjct: 1757 ctcgccggcatccccgccg 1775
>gb|AC023577.6| Homo sapiens chromosome 18, clone RP11-645D5, complete sequence Length = 166503 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 tcaactagccaagcagaaa 89 ||||||||||||||||||| Sbjct: 90685 tcaactagccaagcagaaa 90667
>dbj|AK038283.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130092J02 product:unclassifiable, full insert sequence Length = 971 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 gccaagcagaaataaggtg 96 ||||||||||||||||||| Sbjct: 466 gccaagcagaaataaggtg 484
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 actagccaagcagaaataa 92 ||||||||||||||||||| Sbjct: 22131582 actagccaagcagaaataa 22131564
>gb|AC092609.2| Homo sapiens BAC clone RP11-160A16 from 4, complete sequence Length = 150751 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 caactagccaagcagaaat 90 ||||||||||||||||||| Sbjct: 51332 caactagccaagcagaaat 51350
>gb|AC154310.2| Mus musculus BAC clone RP23-358E14 from chromosome 13, complete sequence Length = 176209 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 gccaagcagaaataaggtg 96 ||||||||||||||||||| Sbjct: 98300 gccaagcagaaataaggtg 98318
>dbj|AK223421.1| Homo sapiens mRNA for kallikrein 5 preproprotein variant, clone: FCC110B12 Length = 1526 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 86 gaaataaggtgcagcggcaatgg 108 |||||||||||||||||| |||| Sbjct: 283 gaaataaggtgcagcggccatgg 305
>dbj|AP003432.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1112D09 Length = 125920 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 actagccaagcagaaataa 92 ||||||||||||||||||| Sbjct: 27068 actagccaagcagaaataa 27050
>dbj|AB126951.1| Eutreptia viridis mRNA for putative alpha subunit of photoactivated adenylyl cyclase, complete cds, EtvPAC1 Length = 3689 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 163 agcaggggatgccgtcgac 181 ||||||||||||||||||| Sbjct: 2376 agcaggggatgccgtcgac 2358
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 136 cgccggcatccccgccgtc 154 ||||||||||||||||||| Sbjct: 579105 cgccggcatccccgccgtc 579123
>gb|AC174761.1| Gasterosteus aculeatus clone VMRC26-231K14, complete sequence Length = 162397 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 67 ccagtcaactagccaagca 85 ||||||||||||||||||| Sbjct: 107376 ccagtcaactagccaagca 107394
>emb|AL663030.12| Mouse DNA sequence from clone RP23-84C12 on chromosome 11, complete sequence Length = 212085 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 ccaaggcagcagacatcac 56 ||||||||||||||||||| Sbjct: 19904 ccaaggcagcagacatcac 19922 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,052,277 Number of Sequences: 3902068 Number of extensions: 1052277 Number of successful extensions: 72587 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72255 Number of HSP's gapped (non-prelim): 332 length of query: 181 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 159 effective length of database: 17,147,199,772 effective search space: 2726404763748 effective search space used: 2726404763748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)