ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast78h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DQ151544.1| Hordeum vulgare subsp. vulgare cultivar Morex CBF... 149 3e-33
2gb|DQ095157.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo H... 149 3e-33
3gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, geno... 125 5e-26
4gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 44 0.14
5ref|XM_876258.1| PREDICTED: Bos taurus similar to tumor protein ... 42 0.57
6ref|XM_865493.1| PREDICTED: Bos taurus similar to tumor protein ... 42 0.57
7ref|XM_876133.1| PREDICTED: Bos taurus similar to tumor protein ... 42 0.57
8ref|XM_876071.1| PREDICTED: Bos taurus similar to tumor protein ... 42 0.57
9ref|XM_875993.1| PREDICTED: Bos taurus similar to tumor protein ... 42 0.57
10ref|XM_875851.1| PREDICTED: Bos taurus similar to tumor protein ... 42 0.57
11emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete ... 42 0.57
12emb|AL606918.9| Mouse DNA sequence from clone RP23-327O13 on chr... 42 0.57
13dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 2.3
14gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 2.3
15ref|XM_367232.1| Magnaporthe grisea 70-15 hypothetical protein (... 38 8.9
16emb|CR730855.2|CNS0GQVG Tetraodon nigroviridis full-length cDNA 38 8.9
17emb|CR724559.2|CNS0GM0L Tetraodon nigroviridis full-length cDNA 38 8.9
18gb|AY359010.1| Homo sapiens clone DNA59767 KLK5 (UNQ570) mRNA, c... 38 8.9
19ref|NM_012427.3| Homo sapiens kallikrein 5 (KLK5), mRNA 38 8.9
20emb|AL034348.5|HS84D21 Human DNA sequence from clone RP1-84D21 o... 38 8.9
21emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete ... 38 8.9
22emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete ... 38 8.9
23gb|AY279381.1| Homo sapiens kallikrein 5 splice variant 2 (KLK5)... 38 8.9
24emb|AJ505006.1|POL505006 Sorangium cellulosum spiG gene (partial... 38 8.9
25gb|AC023577.6| Homo sapiens chromosome 18, clone RP11-645D5, com... 38 8.9
26dbj|AK038283.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 38 8.9
27dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.9
28gb|AC092609.2| Homo sapiens BAC clone RP11-160A16 from 4, comple... 38 8.9
29gb|AC154310.2| Mus musculus BAC clone RP23-358E14 from chromosom... 38 8.9
30dbj|AK223421.1| Homo sapiens mRNA for kallikrein 5 preproprotein... 38 8.9
31dbj|AP003432.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.9
32dbj|AB126951.1| Eutreptia viridis mRNA for putative alpha subuni... 38 8.9
33gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 38 8.9
34gb|AC174761.1| Gasterosteus aculeatus clone VMRC26-231K14, compl... 38 8.9
35emb|AL663030.12| Mouse DNA sequence from clone RP23-84C12 on chr... 38 8.9

>gb|DQ151544.1| Hordeum vulgare subsp. vulgare cultivar Morex CBF12 (CBF12) gene,
           complete cds
          Length = 735

 Score =  149 bits (75), Expect = 3e-33
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                       
Query: 105 atggacacggtccccgagcgtaactggaactcgccggcatccccgccgtcctccctcgag 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atggacacggtccccgagcgtaactggaactcgccggcatccccgccgtcctccctcgag 60

                          
Query: 165 caggggatgccgtcg 179
           |||||||||||||||
Sbjct: 61  caggggatgccgtcg 75



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>gb|DQ095157.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo HvCBF12 (CBF12)
           gene, complete cds
          Length = 735

 Score =  149 bits (75), Expect = 3e-33
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                       
Query: 105 atggacacggtccccgagcgtaactggaactcgccggcatccccgccgtcctccctcgag 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atggacacggtccccgagcgtaactggaactcgccggcatccccgccgtcctccctcgag 60

                          
Query: 165 caggggatgccgtcg 179
           |||||||||||||||
Sbjct: 61  caggggatgccgtcg 75



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>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence
          Length = 190469

 Score =  125 bits (63), Expect = 5e-26
 Identities = 75/79 (94%)
 Strand = Plus / Minus

                                                                         
Query: 98    agcggcaatggacacggtccccgagcgtaactggaactcgccggcatccccgccgtcctc 157
             ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 88973 agcggcaatggacacgggcccggagcgcaactggaactcgccggcatccccgccgtcctc 88914

                                
Query: 158   cctcgagcaggggatgccg 176
              ||||||||||||||||||
Sbjct: 88913 gctcgagcaggggatgccg 88895



 Score = 48.1 bits (24), Expect = 0.009
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 36    caccaaggcagcagacatcacggctcct 63
             |||||||||||||| |||||||||||||
Sbjct: 89061 caccaaggcagcagccatcacggctcct 89034



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 138     ccggcatccccgccgtcctccc 159
               ||||||||||||||||||||||
Sbjct: 1885333 ccggcatccccgccgtcctccc 1885312



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>ref|XM_876258.1| PREDICTED: Bos taurus similar to tumor protein p53 binding protein,
            1, transcript variant 7 (LOC509111), mRNA
          Length = 2529

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 35   tcaccaaggcagcagacatca 55
            |||||||||||||||||||||
Sbjct: 1279 tcaccaaggcagcagacatca 1299



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>ref|XM_865493.1| PREDICTED: Bos taurus similar to tumor protein p53 binding protein,
            1, transcript variant 2 (LOC509111), mRNA
          Length = 2857

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 35   tcaccaaggcagcagacatca 55
            |||||||||||||||||||||
Sbjct: 1619 tcaccaaggcagcagacatca 1639



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>ref|XM_876133.1| PREDICTED: Bos taurus similar to tumor protein p53 binding protein,
            1, transcript variant 6 (LOC509111), mRNA
          Length = 2274

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 35   tcaccaaggcagcagacatca 55
            |||||||||||||||||||||
Sbjct: 1619 tcaccaaggcagcagacatca 1639



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>ref|XM_876071.1| PREDICTED: Bos taurus similar to tumor protein p53 binding protein,
            1, transcript variant 5 (LOC509111), mRNA
          Length = 1937

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 35   tcaccaaggcagcagacatca 55
            |||||||||||||||||||||
Sbjct: 1282 tcaccaaggcagcagacatca 1302



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>ref|XM_875993.1| PREDICTED: Bos taurus similar to tumor protein p53 binding protein,
            1, transcript variant 4 (LOC509111), mRNA
          Length = 2532

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 35   tcaccaaggcagcagacatca 55
            |||||||||||||||||||||
Sbjct: 1282 tcaccaaggcagcagacatca 1302



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>ref|XM_875851.1| PREDICTED: Bos taurus similar to tumor protein p53 binding protein,
           1, transcript variant 3 (LOC509111), mRNA
          Length = 1912

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 35  tcaccaaggcagcagacatca 55
           |||||||||||||||||||||
Sbjct: 662 tcaccaaggcagcagacatca 682



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>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29
          Length = 313800

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 119    cgagcgtaactggaactcgccggca 143
              |||||| ||||||||||||||||||
Sbjct: 128867 cgagcggaactggaactcgccggca 128891



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>emb|AL606918.9| Mouse DNA sequence from clone RP23-327O13 on chromosome 4, complete
             sequence
          Length = 192787

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 32    cattcaccaaggcagcagacatcac 56
             ||||||||||||||||||| |||||
Sbjct: 21577 cattcaccaaggcagcagatatcac 21601



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 137     gccggcatccccgccgtcct 156
               ||||||||||||||||||||
Sbjct: 2112058 gccggcatccccgccgtcct 2112039



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 139     cggcatccccgccgtcctcc 158
               ||||||||||||||||||||
Sbjct: 4840528 cggcatccccgccgtcctcc 4840509



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>ref|XM_367232.1| Magnaporthe grisea 70-15 hypothetical protein (MG07157.4) partial
           mRNA
          Length = 1992

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 136 cgccggcatccccgccgtc 154
           |||||||||||||||||||
Sbjct: 954 cgccggcatccccgccgtc 972



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>emb|CR730855.2|CNS0GQVG Tetraodon nigroviridis full-length cDNA
          Length = 1455

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 68 cagtcaactagccaagcag 86
          |||||||||||||||||||
Sbjct: 72 cagtcaactagccaagcag 90



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>emb|CR724559.2|CNS0GM0L Tetraodon nigroviridis full-length cDNA
          Length = 1461

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 68 cagtcaactagccaagcag 86
          |||||||||||||||||||
Sbjct: 77 cagtcaactagccaagcag 95



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>gb|AY359010.1| Homo sapiens clone DNA59767 KLK5 (UNQ570) mRNA, complete cds
          Length = 1570

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 86  gaaataaggtgcagcggcaatgg 108
           |||||||||||||||||| ||||
Sbjct: 335 gaaataaggtgcagcggccatgg 357



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>ref|NM_012427.3| Homo sapiens kallikrein 5 (KLK5), mRNA
          Length = 1528

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 86  gaaataaggtgcagcggcaatgg 108
           |||||||||||||||||| ||||
Sbjct: 267 gaaataaggtgcagcggccatgg 289



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>emb|AL034348.5|HS84D21 Human DNA sequence from clone RP1-84D21 on chromosome 6q15-16.3,
             complete sequence
          Length = 120514

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 76    tagccaagcagaaataagg 94
             |||||||||||||||||||
Sbjct: 41062 tagccaagcagaaataagg 41044



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>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 127    actggaactcgccggcatc 145
              |||||||||||||||||||
Sbjct: 239308 actggaactcgccggcatc 239326



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>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29
          Length = 311000

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 139   cggcatccccgccgtcctc 157
             |||||||||||||||||||
Sbjct: 60111 cggcatccccgccgtcctc 60129



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>gb|AY279381.1| Homo sapiens kallikrein 5 splice variant 2 (KLK5) mRNA, complete
           cds; alternatively spliced
          Length = 1438

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 86  gaaataaggtgcagcggcaatgg 108
           |||||||||||||||||| ||||
Sbjct: 177 gaaataaggtgcagcggccatgg 199



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>emb|AJ505006.1|POL505006 Sorangium cellulosum spiG gene (partial), spiH gene, spiI gene, spiJ
            gene, spiK gene, spiL gene and spiZ gene
          Length = 48000

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 134  ctcgccggcatccccgccg 152
            |||||||||||||||||||
Sbjct: 1757 ctcgccggcatccccgccg 1775



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>gb|AC023577.6| Homo sapiens chromosome 18, clone RP11-645D5, complete sequence
          Length = 166503

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 71    tcaactagccaagcagaaa 89
             |||||||||||||||||||
Sbjct: 90685 tcaactagccaagcagaaa 90667



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>dbj|AK038283.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130092J02
           product:unclassifiable, full insert sequence
          Length = 971

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 78  gccaagcagaaataaggtg 96
           |||||||||||||||||||
Sbjct: 466 gccaagcagaaataaggtg 484



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 74       actagccaagcagaaataa 92
                |||||||||||||||||||
Sbjct: 22131582 actagccaagcagaaataa 22131564



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>gb|AC092609.2| Homo sapiens BAC clone RP11-160A16 from 4, complete sequence
          Length = 150751

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 72    caactagccaagcagaaat 90
             |||||||||||||||||||
Sbjct: 51332 caactagccaagcagaaat 51350



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>gb|AC154310.2| Mus musculus BAC clone RP23-358E14 from chromosome 13, complete
             sequence
          Length = 176209

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 78    gccaagcagaaataaggtg 96
             |||||||||||||||||||
Sbjct: 98300 gccaagcagaaataaggtg 98318



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>dbj|AK223421.1| Homo sapiens mRNA for kallikrein 5 preproprotein variant, clone:
           FCC110B12
          Length = 1526

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 86  gaaataaggtgcagcggcaatgg 108
           |||||||||||||||||| ||||
Sbjct: 283 gaaataaggtgcagcggccatgg 305



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>dbj|AP003432.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1112D09
          Length = 125920

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 74    actagccaagcagaaataa 92
             |||||||||||||||||||
Sbjct: 27068 actagccaagcagaaataa 27050



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>dbj|AB126951.1| Eutreptia viridis mRNA for putative alpha subunit of photoactivated
            adenylyl cyclase, complete cds, EtvPAC1
          Length = 3689

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 163  agcaggggatgccgtcgac 181
            |||||||||||||||||||
Sbjct: 2376 agcaggggatgccgtcgac 2358



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 136    cgccggcatccccgccgtc 154
              |||||||||||||||||||
Sbjct: 579105 cgccggcatccccgccgtc 579123



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>gb|AC174761.1| Gasterosteus aculeatus clone VMRC26-231K14, complete sequence
          Length = 162397

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 67     ccagtcaactagccaagca 85
              |||||||||||||||||||
Sbjct: 107376 ccagtcaactagccaagca 107394



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>emb|AL663030.12| Mouse DNA sequence from clone RP23-84C12 on chromosome 11, complete
             sequence
          Length = 212085

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    ccaaggcagcagacatcac 56
             |||||||||||||||||||
Sbjct: 19904 ccaaggcagcagacatcac 19922


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,052,277
Number of Sequences: 3902068
Number of extensions: 1052277
Number of successful extensions: 72587
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72255
Number of HSP's gapped (non-prelim): 332
length of query: 181
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 159
effective length of database: 17,147,199,772
effective search space: 2726404763748
effective search space used: 2726404763748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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