ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast78h06 |
|---|---|
| Clone Library Name | barley_pub |
>AMAB2_BACST (Q53389) N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)| (L-carbamoylase) Length = 409 Score = 64.7 bits (156), Expect = 1e-10 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Frame = +2 Query: 212 RLNQLGKIS-DGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHGRFEPSNS 388 RL +LG++ G + R + RA D++ +M++AGL + D GN+ GR E +N Sbjct: 10 RLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYEDAAGNLIGRKEGTNP 69 Query: 389 TEKALLIGSHMDTVIDAGMYDGALGIICAISAL 487 +L+GSH+D+V + G +DG LG++ + + Sbjct: 70 DATVVLVGSHLDSVYNGGCFDGPLGVLAGVEVV 102
>AMAB1_BACST (P37113) N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)| (L-carbamoylase) Length = 409 Score = 64.7 bits (156), Expect = 1e-10 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Frame = +2 Query: 212 RLNQLGKIS-DGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHGRFEPSNS 388 RL +LG++ G + R + RA D++ +M++AGL + D GN+ GR E +N Sbjct: 10 RLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYEDAAGNLIGRKEGTNP 69 Query: 389 TEKALLIGSHMDTVIDAGMYDGALGIICAISAL 487 +L+GSH+D+V + G +DG LG++ + + Sbjct: 70 DATVVLVGSHLDSVYNGGCFDGPLGVLAGVEVV 102
>HYUC_PSESN (Q01264) Hydantoin utilization protein C (ORF4)| Length = 414 Score = 63.2 bits (152), Expect = 4e-10 Identities = 32/89 (35%), Positives = 53/89 (59%) Frame = +2 Query: 212 RLNQLGKISDGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHGRFEPSNST 391 +L ++GK D ++R LS AT ++ WM++AGLT D GN+ GR E + Sbjct: 17 QLGEIGKTKDKG--VQRLALSKEDREATLLVSEWMREAGLTVTHDHFGNLIGRKEGETPS 74 Query: 392 EKALLIGSHMDTVIDAGMYDGALGIICAI 478 +++IGSH+D+V + G +DG +G++ I Sbjct: 75 LPSVMIGSHIDSVRNGGKFDGVIGVLAGI 103
>ALLC_BACSU (O32149) Allantoate amidohydrolase (EC 3.5.3.-)| Length = 412 Score = 58.5 bits (140), Expect = 9e-09 Identities = 26/58 (44%), Positives = 38/58 (65%) Frame = +2 Query: 314 MKDAGLTTWVDQMGNIHGRFEPSNSTEKALLIGSHMDTVIDAGMYDGALGIICAISAL 487 M GL T D +GN+ GR + S ++ ++ GSH+DTVI+ G YDGA G++ A+ AL Sbjct: 50 MSSFGLETRFDDVGNVFGRLSGTQSPDEVIVTGSHIDTVINGGKYDGAYGVLAAMLAL 107
>ALLC_ECOLI (P77425) Allantoate amidohydrolase (EC 3.5.3.-)| Length = 411 Score = 53.5 bits (127), Expect = 3e-07 Identities = 31/97 (31%), Positives = 50/97 (51%) Frame = +2 Query: 197 DETVLRLNQLGKISDGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHGRFE 376 +ET+ L+ G +D G + R SP M +GL T D++GN++GR Sbjct: 10 EETLPWLSSFG--ADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLN 67 Query: 377 PSNSTEKALLIGSHMDTVIDAGMYDGALGIICAISAL 487 + ++ +L GSH+DTV++ G DG G + A A+ Sbjct: 68 GTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAI 104
>Y588_HAEIN (Q57051) Protein HI0588| Length = 411 Score = 45.8 bits (107), Expect = 6e-05 Identities = 28/91 (30%), Positives = 45/91 (49%) Frame = +2 Query: 215 LNQLGKISDGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHGRFEPSNSTE 394 + +L IS L R + +A ++II K+ L+ D +GN+ R Sbjct: 12 IEKLAFISSVPNELTRLAFTEEDEKAHNMIIELCKEYDLSIRRDSIGNLFIRKAGKEDFL 71 Query: 395 KALLIGSHMDTVIDAGMYDGALGIICAISAL 487 A+ GSH+DTV++AG +DG LG + + L Sbjct: 72 PAVAFGSHIDTVVNAGKFDGPLGSVAGLEIL 102
>SGCX_SALTI (P58536) Putative sgc region protein sgcX| Length = 372 Score = 30.8 bits (68), Expect = 2.0 Identities = 22/77 (28%), Positives = 32/77 (41%) Frame = +2 Query: 200 ETVLRLNQLGKISDGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHGRFEP 379 ET+ L +L IS E + +A DV W D++GN+ R+ Sbjct: 7 ETLFSLLRLNGISGHESSIANVMQHAFEQQAKDV------------WRDRLGNVVARYGS 54 Query: 380 SNSTEKALLIGSHMDTV 430 S L+I +HMD V Sbjct: 55 DKSDALRLMIFAHMDEV 71
>YDDA_ECOLI (P31826) Inner membrane ABC transporter ATP-binding protein yddA| (CDS102) Length = 561 Score = 30.8 bits (68), Expect = 2.0 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 5/48 (10%) Frame = -2 Query: 274 TQERPFEEPFAIRYLAELVE-----PEDRLVPENLPVQAIPSSWLLLR 146 T++RP +P ++ ++ + P+++++ ENL P WLLL+ Sbjct: 352 TEQRPTNKPKNCQHAVQVADASIRTPDNKIILENLNFHVSPGKWLLLK 399
>CINA_DEIRA (O32508) CinA-like protein| Length = 404 Score = 30.8 bits (68), Expect = 2.0 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Frame = -2 Query: 313 PADNDISGSE-GSRTQERPFEEPFAIRYLAELVEPEDRLVPENLPVQA--IPSSWLLLRP 143 P D+D++ + QE P E+P + +L L E R++PE QA IPS+ L P Sbjct: 72 PTDDDLTREAIAAVMQETPAEDPELLAWLRGLYEARGRVMPEVNRKQAWLIPSAEALPNP 131 Query: 142 V 140 V Sbjct: 132 V 132
>SHG1_SCHPO (Q10321) Set1 complex component shg1 (Set1C component shg1)| (COMPASS component shg1) (Complex proteins associated with set1 protein shg1) Length = 128 Score = 29.6 bits (65), Expect = 4.5 Identities = 22/62 (35%), Positives = 33/62 (53%) Frame = +2 Query: 176 LYREILRDETVLRLNQLGKISDGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMG 355 L ++IL E+ L++L KI D E +RT S FRA +I G + + L + D M Sbjct: 25 LRKQILETESGPLLDRLKKIIDEEMVKDRTLKSKDQFRAAPLIAGAVDRSSL--YEDSME 82 Query: 356 NI 361 +I Sbjct: 83 HI 84
>PEPD_ECOLI (P15288) Aminoacyl-histidine dipeptidase (EC 3.4.13.3) (Xaa-His| dipeptidase) (X-His dipeptidase) (Beta-alanyl-histidine dipeptidase) (Carnosinase) (Peptidase D) Length = 484 Score = 29.6 bits (65), Expect = 4.5 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Frame = +2 Query: 296 DVIIGWMKDAGLTTWVDQMGNIHGRFEPSNSTE--KALLIGSHMDTV 430 + I+GW K+ G DQ+GNI R + E K +++ +H+D V Sbjct: 33 EYIVGWAKEKGFHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMV 79
>RBCC1_MOUSE (Q9ESK9) RB1-inducible coiled-coil protein 1 (Coiled-coil-forming| protein 1) (LaXp180 protein) Length = 1588 Score = 29.3 bits (64), Expect = 5.9 Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Frame = -3 Query: 132 GAVARRLAGTPERRRMRTATEGR--EVEEGAMMS 37 GA A L G PER M TA EGR E +MMS Sbjct: 1407 GACAPELPGEPERSVMETADEGRLDSAMETSMMS 1440
>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor| Length = 3063 Score = 28.9 bits (63), Expect = 7.7 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 7/86 (8%) Frame = +2 Query: 197 DETVLRLNQLG--KISDGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHG- 367 D TVL + ++G K+ G G F SP + + +D + + TW G + G Sbjct: 1062 DITVLPIYKMGEGKLRQGSGTTASRFKSPRNLKTSDPTMSSFR----VTWEPAPGEVKGY 1117 Query: 368 --RFEPSNSTEK--ALLIGSHMDTVI 433 F P+ + L++G + +TV+ Sbjct: 1118 KVTFHPTGDDRRLGELVVGPYDNTVV 1143
>SGCX_SALTY (P58535) Putative sgc region protein sgcX| Length = 372 Score = 28.9 bits (63), Expect = 7.7 Identities = 21/77 (27%), Positives = 31/77 (40%) Frame = +2 Query: 200 ETVLRLNQLGKISDGEGFLERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHGRFEP 379 ET+ L +L IS E + +A DV W D++GN+ R+ Sbjct: 7 ETLFSLLRLNGISGHENSIANVMQHAFEQQAKDV------------WRDRLGNVVARYGS 54 Query: 380 SNSTEKALLIGSHMDTV 430 L+I +HMD V Sbjct: 55 DKPDALRLMIFAHMDEV 71
>SGCX_ECOLI (P39366) Putative sgc region protein sgcX| Length = 373 Score = 28.9 bits (63), Expect = 7.7 Identities = 15/59 (25%), Positives = 26/59 (44%) Frame = +2 Query: 254 LERTFLSPASFRATDVIIGWMKDAGLTTWVDQMGNIHGRFEPSNSTEKALLIGSHMDTV 430 L+ +S DV++ + W D++GN+ R+ L+I +HMD V Sbjct: 13 LQHNAISGHENAVADVMLCEFRRQAKEVWRDRLGNVVARYGSDKPDALRLMIFAHMDEV 71
>FKBA_BUCAI (P57599) FKBP-type peptidyl-prolyl cis-trans isomerase fkpA (EC| 5.2.1.8) (PPIase) (Rotamase) Length = 241 Score = 28.9 bits (63), Expect = 7.7 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 4/98 (4%) Frame = +2 Query: 185 EILRDETVLRLNQLGKISDGEGFLERTFLS--PASFRATDVIIGWMKDAGLTTWVDQMGN 358 E L+DET + ++ G + +G F + ++ P S R DVI+GW + GL ++ + G Sbjct: 148 EALKDETKITVHYKGTLINGLEF-DNSYKRGRPVSLRLKDVILGWKE--GL-KYIKKGGK 203 Query: 359 IHGRFEP--SNSTEKALLIGSHMDTVIDAGMYDGALGI 466 I P + TE+ I ++ + D + D G+ Sbjct: 204 IKLVIPPNLAYGTEEVNGIPANSTLIFDIELLDVVNGV 241 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,357,635 Number of Sequences: 219361 Number of extensions: 1311896 Number of successful extensions: 3734 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3651 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3734 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
