Clone Information

BLAST Search Result

Clone Name	bast78h02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	YEAS_ECOLI (P76249) Hypothetical protein yeaS	35	0.10
2	RCOR1_HUMAN (Q9UKL0) REST corepressor 1 (Protein CoREST)	33	0.51
3	Y930_MYCBO (P64760) Hypothetical protein Mb0930 precursor	32	1.1
4	Y906_MYCTU (P64759) Hypothetical protein Rv0906/MT0929 precursor	32	1.1
5	UBP21_MOUSE (Q9QZL6) Ubiquitin carboxyl-terminal hydrolase 21 (E...	32	1.1
6	STCA_EMENI (Q12397) Putative sterigmatocystin biosynthesis polyk...	31	1.9
7	GUNB_CALSA (P10474) Endoglucanase/exoglucanase B precursor [Incl...	31	1.9
8	QOX1_ACEAC (P98009) Ubiquinol oxidase subunit 1 precursor (EC 1....	30	2.5
9	MRIP_RAT (Q9ERE6) Myosin phosphatase Rho-interacting protein (Rh...	30	2.5
10	CAPU_DROME (Q24120) Protein cappuccino	30	3.3
11	RAD5_YARLI (Q6C2R8) DNA repair protein RAD5 (EC 3.6.1.-)	30	3.3
12	LDB3_HUMAN (O75112) LIM domain-binding protein 3 (Z-band alterna...	30	3.3
13	LAMP2_MOUSE (P17047) Lysosome-associated membrane glycoprotein 2...	30	3.3
14	MNHD_STAAW (P60687) Na(+)/H(+) antiporter subunit D (Mnh complex...	30	3.3
15	MNHD_STAAU (P60686) Na(+)/H(+) antiporter subunit D (Mnh complex...	30	3.3
16	MNHD_STAAS (Q6GAX7) Na(+)/H(+) antiporter subunit D (Mnh complex...	30	3.3
17	MNHD_STAAR (Q6GID9) Na(+)/H(+) antiporter subunit D (Mnh complex...	30	3.3
18	MNHD_STAAN (P60685) Na(+)/H(+) antiporter subunit D (Mnh complex...	30	3.3
19	MNHD_STAAM (P60684) Na(+)/H(+) antiporter subunit D (Mnh complex...	30	3.3
20	MNHD_STAAC (Q5HHD6) Na(+)/H(+) antiporter subunit D (Mnh complex...	30	3.3
21	PLXC1_MOUSE (Q9QZC2) Plexin-C1 precursor (Receptor for viral-enc...	30	3.3
22	LAMP2_RAT (P17046) Lysosome-associated membrane glycoprotein 2 p...	30	3.3
23	CRCB_XANOR (Q5GZS7) Protein crcB homolog	30	4.3
24	SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 ...	30	4.3
25	NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)	29	5.6
26	MCH1_CANAL (Q59MJ2) Probable transporter MCH1	29	5.6
27	TFEB_MOUSE (Q9R210) Transcription factor EB	29	7.3
28	TLE1_XENLA (O42469) Enhancer of split groucho-like protein 1	29	7.3
29	GRIK2_MOUSE (P39087) Glutamate receptor, ionotropic kainate 2 pr...	29	7.3
30	BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic ch...	29	7.3
31	GRIK2_RAT (P42260) Glutamate receptor, ionotropic kainate 2 prec...	29	7.3
32	GRIK2_HUMAN (Q13002) Glutamate receptor, ionotropic kainate 2 pr...	29	7.3
33	TFEB_HUMAN (P19484) Transcription factor EB	29	7.3
34	PATL3_ARATH (Q56Z59) Patellin-3	29	7.3
35	GNPTA_MOUSE (Q69ZN6) N-acetylglucosamine-1-phosphotransferase su...	29	7.3
36	NPBW2_BOVIN (Q8MJV2) Neuropeptides B/W receptor type 2 (G-protei...	28	9.6
37	GNPTA_HUMAN (Q3T906) N-acetylglucosamine-1-phosphotransferase su...	28	9.6
38	TOM1_ASHGO (Q756G2) Probable E3 ubiquitin protein ligase TOM1 (E...	28	9.6
39	LPP_MOUSE (Q8BFW7) Lipoma-preferred partner homolog	28	9.6
40	LPP_RAT (Q5XI07) Lipoma-preferred partner homolog	28	9.6
41	CREA_GIBFU (O94131) DNA-binding protein creA (Carbon catabolite ...	28	9.6
42	MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia p...	28	9.6

>YEAS_ECOLI (P76249) Hypothetical protein yeaS|
          Length = 212

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
 Frame = +2

Query: 104 HWLSLVGTIWLQTINGPNSDFPVYSSQLKELKGISQVQLNFLA----FASDAGKLFGWFS 271
           +W  LVG I++  + GPN+ F + +S    +KG       +LA    F  DA  +F  ++
Sbjct: 10  YWTYLVGAIFIVLVPGPNTLFVLKNSVSSGMKG------GYLAACGVFIGDAVLMFLAWA 63

Query: 272 GVAALYVPLP----LVAFVGASFGLVGYGVQYLF 361
           GVA L    P    +V ++GA F L+  G + L+
Sbjct: 64  GVATLIKTTPILFNIVRYLGA-FYLLYLGSKILY 96

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>RCOR1_HUMAN (Q9UKL0) REST corepressor 1 (Protein CoREST)|
          Length = 482

 Score = 32.7 bits (73), Expect = 0.51
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
 Frame = -1

Query: 348 TP*PTSPNEAPTKATSGRGT*SAATPEN-QPKSLPASEAKARKLSCTWEMPLSSLSCDE* 172
           +P  T+ + A   + S     +AA P N Q KSL A+       S +WE   S  S DE 
Sbjct: 37  SPAATAASGAAASSASAAAASAAAAPNNGQNKSLAAAAPNGNSSSNSWEEGSSGSSSDEE 96

Query: 171 TGKS--ELGP--LMVCSQMVPTRLSQWAEEGDDI 82
            G     +GP    V     P +L++ ++E D++
Sbjct: 97  HGGGGMRVGPQYQAVVPDFDPAKLARRSQERDNL 130

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>Y930_MYCBO (P64760) Hypothetical protein Mb0930 precursor|
          Length = 372

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 10  GAPVPNTTTSTTPEHVPLPSPLPGDVVAFLGPLAEPRW 123
           G PV     +  PEHV +  PLPG  V   GP+    W
Sbjct: 332 GEPVERLLAAAEPEHVTVAVPLPGQRVDPTGPMRLHPW 369

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>Y906_MYCTU (P64759) Hypothetical protein Rv0906/MT0929 precursor|
          Length = 372

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 10  GAPVPNTTTSTTPEHVPLPSPLPGDVVAFLGPLAEPRW 123
           G PV     +  PEHV +  PLPG  V   GP+    W
Sbjct: 332 GEPVERLLAAAEPEHVTVAVPLPGQRVDPTGPMRLHPW 369

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>UBP21_MOUSE (Q9QZL6) Ubiquitin carboxyl-terminal hydrolase 21 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 21) (Ubiquitin-specific
           processing protease 21) (Deubiquitinating enzyme 21)
          Length = 566

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = -1

Query: 429 QMPFPARAVSKNRCQHLSAGLSRKRYWTP*PTSPNEAPTKATSGRGT*SAATP 271
           ++PFP RA SK R   +    S  R   P P  P+E   K   GRG  S + P
Sbjct: 26  KIPFPPRARSKERRNPVPGPNSMLRPLPPRPGPPDERLKKLELGRGRTSGSRP 78

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>STCA_EMENI (Q12397) Putative sterigmatocystin biosynthesis polyketide synthase|
           (PKS)
          Length = 2181

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -1

Query: 216 CTWEMPLSSLSCDE*TGKSELGPLMVCSQMVPTRLSQWAEEGDD 85
           CT  +  +++SC   T  SEL P+ V + +V  RL  WAE+  D
Sbjct: 120 CTGSLAAAAISCS--TSLSELLPIAVQTVLVAFRLGLWAEKVRD 161

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>GUNB_CALSA (P10474) Endoglucanase/exoglucanase B precursor [Includes:|
           Endoglucanase (EC 3.2.1.4) (Endo-1,4-beta-glucanase)
           (Cellulase) (Cellobiohydrolase); Exoglucanase (EC
           3.2.1.91) (Exocellobiohydrolase)
           (1,4-beta-cellobiohydrolase)]
          Length = 1039

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 22/106 (20%)
 Frame = +2

Query: 26  TPPPAPPQSTYRSHLLSPEMSSPSSA------HWLSLVGT---------IWLQTIN---- 148
           TP PAP Q+   +  L+P  +  SS        WL + G          +WL  IN    
Sbjct: 596 TPTPAPTQTAIPTPTLTPNPTPTSSIPDDTNDDWLYVSGNKIVDKDGRPVWLTGINWFGY 655

Query: 149 --GPNSDFPVYSSQLKE-LKGISQVQLNFLAFASDAGKLFGWFSGV 277
             G N    V+S  LK+ L  I+    N L     A  +  W  G+
Sbjct: 656 NTGTNVFDGVWSCNLKDTLAEIANRGFNLLRVPISAELILNWSQGI 701

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>QOX1_ACEAC (P98009) Ubiquinol oxidase subunit 1 precursor (EC 1.10.3.-)|
           (Ubiquinol oxidase polypeptide I) (Cytochrome A1 subunit
           1) (Oxidase BA(3) subunit 1)
          Length = 664

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = +2

Query: 263 WFSGVAALYVPLPLVAFVGASFGLVGYGVQYLFLDSPALKCWHLFLLTALAG 418
           WF G    +VPL +V F G +  L  Y       D+PA   WH +LL A  G
Sbjct: 460 WFVGFYCAFVPLYIVGFEGMTRRLNHY-------DNPA---WHPWLLVAEVG 501

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>MRIP_RAT (Q9ERE6) Myosin phosphatase Rho-interacting protein|
           (Rho-interacting protein 3) (p116Rip) (RIP3)
          Length = 1029

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 7/138 (5%)
 Frame = -1

Query: 462 DAEEVANGVIQQMPFPARAVSKNRCQHLSAGLSRKRYWTP*PTSPNEAPTKATSGRGT*S 283
           + +E+ +G ++ +    R   +N+ +       +++   P P  P  A    TS  G  S
Sbjct: 133 ETKEIISGWLEMLMVYPRTNKQNQKK-------KRKVEPPTPQEPGPAKMAVTSSSGGSS 185

Query: 282 AATPENQPKSLPASEAKARKLSCTWEMPLSSLSCDE*TGKSELGPLMVCSQMVPTRLSQW 103
            ++  +   S+P++E      S  W+  + +   D+  G S L P+   SQ  P      
Sbjct: 186 GSSSSSSSSSIPSAEKVPTTKSTLWQEEMRAK--DQPDGTS-LSPVQSPSQSQPPAACTP 242

Query: 102 AEEGDD-------ISGER 70
            E G D       +SG+R
Sbjct: 243 RETGLDSKEDENILSGDR 260

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>CAPU_DROME (Q24120) Protein cappuccino|
          Length = 1059

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 29  PPPAPPQSTYRSHL-LSPE-MSSPSSAHWLSLVGTIWLQTINGPNSDFPVYSSQL 187
           PPP PP S   S   +SP  +  P+  +W     T+    +N P    P+Y +++
Sbjct: 549 PPPPPPMSASPSKTTISPAPLPDPAEGNWFHRTNTMRKSAVNPPKPMRPLYWTRI 603

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>RAD5_YARLI (Q6C2R8) DNA repair protein RAD5 (EC 3.6.1.-)|
          Length = 1025

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 10  GAPVPNTTTSTTPEHVPLPSPLPGDVVAFLGPLAEPRWDHLAA 138
           G P  N+    TP     PS    D+ AFLGPL++ R+  L A
Sbjct: 34  GKPASNSLARPTPA----PSTFRSDLEAFLGPLSDQRFGLLLA 72

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>LDB3_HUMAN (O75112) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher)
          Length = 727

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 13  APVPNTTTSTTPEHVPLPSP--LPGDVVAFLGPLAEP 117
           +PVP  T S  P + P P+P   P   VA+ G  AEP
Sbjct: 448 SPVPTYTPSPAPAYTPSPAPNYNPAPSVAYSGGPAEP 484

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>LAMP2_MOUSE (P17047) Lysosome-associated membrane glycoprotein 2 precursor|
           (LAMP-2) (Lysosomal membrane glycoprotein type B)
           (LGP-B) (CD107b antigen)
          Length = 415

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 4   IIGAPVPNTTTSTTPEHVPLPSPLPGDVV 90
           II    P+TTT+ TP   P P+P P   V
Sbjct: 197 IIHTTAPSTTTTLTPTSTPTPTPTPTPTV 225

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>MNHD_STAAW (P60687) Na(+)/H(+) antiporter subunit D (Mnh complex subunit D)|
          Length = 498

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +2

Query: 113 SLVGTIWLQTINGPNSDFPVYSSQLKELKGISQVQLNFLAFASDAGKLFGWFSGVAALYV 292
           S+VGT+ L  I+   ++   + S L  +  I    L    FA+ AG +F  F  + + Y 
Sbjct: 184 SVVGTLNLADISNKLANLSAHDSGLVNIVFI----LFIFVFATKAG-VFPMFVWLPSAYY 238

Query: 293 --PLPLVAFVGASFGLVG 340
             P+P++AF GA    VG
Sbjct: 239 APPIPIIAFFGALLTKVG 256

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>MNHD_STAAU (P60686) Na(+)/H(+) antiporter subunit D (Mnh complex subunit D)|
          Length = 498

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +2

Query: 113 SLVGTIWLQTINGPNSDFPVYSSQLKELKGISQVQLNFLAFASDAGKLFGWFSGVAALYV 292
           S+VGT+ L  I+   ++   + S L  +  I    L    FA+ AG +F  F  + + Y 
Sbjct: 184 SVVGTLNLADISNKLANLSAHDSGLVNIVFI----LFIFVFATKAG-VFPMFVWLPSAYY 238

Query: 293 --PLPLVAFVGASFGLVG 340
             P+P++AF GA    VG
Sbjct: 239 APPIPIIAFFGALLTKVG 256

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>MNHD_STAAS (Q6GAX7) Na(+)/H(+) antiporter subunit D (Mnh complex subunit D)|
          Length = 498

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +2

Query: 113 SLVGTIWLQTINGPNSDFPVYSSQLKELKGISQVQLNFLAFASDAGKLFGWFSGVAALYV 292
           S+VGT+ L  I+   ++   + S L  +  I    L    FA+ AG +F  F  + + Y 
Sbjct: 184 SVVGTLNLADISNKLANLSAHDSGLVNIVFI----LFIFVFATKAG-VFPMFVWLPSAYY 238

Query: 293 --PLPLVAFVGASFGLVG 340
             P+P++AF GA    VG
Sbjct: 239 APPIPIIAFFGALLTKVG 256

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>MNHD_STAAR (Q6GID9) Na(+)/H(+) antiporter subunit D (Mnh complex subunit D)|
          Length = 498

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +2

Query: 113 SLVGTIWLQTINGPNSDFPVYSSQLKELKGISQVQLNFLAFASDAGKLFGWFSGVAALYV 292
           S+VGT+ L  I+   ++   + S L  +  I    L    FA+ AG +F  F  + + Y 
Sbjct: 184 SVVGTLNLADISNKLANLSAHDSGLVNIVFI----LFIFVFATKAG-VFPMFVWLPSAYY 238

Query: 293 --PLPLVAFVGASFGLVG 340
             P+P++AF GA    VG
Sbjct: 239 APPIPIIAFFGALLTKVG 256

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>MNHD_STAAN (P60685) Na(+)/H(+) antiporter subunit D (Mnh complex subunit D)|
          Length = 498

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +2

Query: 113 SLVGTIWLQTINGPNSDFPVYSSQLKELKGISQVQLNFLAFASDAGKLFGWFSGVAALYV 292
           S+VGT+ L  I+   ++   + S L  +  I    L    FA+ AG +F  F  + + Y 
Sbjct: 184 SVVGTLNLADISNKLANLSAHDSGLVNIVFI----LFIFVFATKAG-VFPMFVWLPSAYY 238

Query: 293 --PLPLVAFVGASFGLVG 340
             P+P++AF GA    VG
Sbjct: 239 APPIPIIAFFGALLTKVG 256

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>MNHD_STAAM (P60684) Na(+)/H(+) antiporter subunit D (Mnh complex subunit D)|
          Length = 498

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +2

Query: 113 SLVGTIWLQTINGPNSDFPVYSSQLKELKGISQVQLNFLAFASDAGKLFGWFSGVAALYV 292
           S+VGT+ L  I+   ++   + S L  +  I    L    FA+ AG +F  F  + + Y 
Sbjct: 184 SVVGTLNLADISNKLANLSAHDSGLVNIVFI----LFIFVFATKAG-VFPMFVWLPSAYY 238

Query: 293 --PLPLVAFVGASFGLVG 340
             P+P++AF GA    VG
Sbjct: 239 APPIPIIAFFGALLTKVG 256

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>MNHD_STAAC (Q5HHD6) Na(+)/H(+) antiporter subunit D (Mnh complex subunit D)|
          Length = 498

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +2

Query: 113 SLVGTIWLQTINGPNSDFPVYSSQLKELKGISQVQLNFLAFASDAGKLFGWFSGVAALYV 292
           S+VGT+ L  I+   ++   + S L  +  I    L    FA+ AG +F  F  + + Y 
Sbjct: 184 SVVGTLNLADISNKLANLSAHDSGLVNIVFI----LFIFVFATKAG-VFPMFVWLPSAYY 238

Query: 293 --PLPLVAFVGASFGLVG 340
             P+P++AF GA    VG
Sbjct: 239 APPIPIIAFFGALLTKVG 256

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>PLXC1_MOUSE (Q9QZC2) Plexin-C1 precursor (Receptor for viral-encoded semaphorin|
           protein)
          Length = 1574

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
 Frame = -1

Query: 294 GT*SAATPENQPKSLPA---------SEAKARKLSCTWEMPLSSLSCDE*TGKSELGPLM 142
           G  SAAT E Q +  PA         SE +A   SC+W+   +  +C E      + P+ 
Sbjct: 308 GVFSAATGEGQERRSPATTALCLFRMSEIQAHARSCSWDFQATEHNCKEGDRPERVQPI- 366

Query: 141 VCSQMVPTRLSQWAEEGDDISGERRWERYVLWGGAGGG 28
             S ++ + L+        + G     R VL+ G G G
Sbjct: 367 ASSTLIHSDLT-------SVYGTVVMNRTVLFLGTGDG 397

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>LAMP2_RAT (P17046) Lysosome-associated membrane glycoprotein 2 precursor|
           (LAMP-2) (Lysosomal membrane glycoprotein-type B)
           (LGP-B) (LGP-96) (LGP-110) (CD107b antigen)
          Length = 411

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 4   IIGAPVPNTTTSTTPEHVPLPSPLPGD 84
           II   VP+ TT+ TP  +P+P+P  G+
Sbjct: 197 IIHTTVPSPTTTLTPTSIPVPTPTVGN 223

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>CRCB_XANOR (Q5GZS7) Protein crcB homolog|
          Length = 167

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
 Frame = +2

Query: 227 LAFASDAGKLFGWFSGVA--ALYVPLP---LVAFVGASFGLVGYGVQYLFLDSPALKCWH 391
           ++  +  G L  +  G+A  A++ PLP   L A + A++ +VG  + Y+         W 
Sbjct: 42  ISLGASLGALARYGLGLALNAIFPPLPIGTLAANLIAAY-VVGVTIAYVGTVPGLSPLWR 100

Query: 392 LFLLTALAGNGICWITPFATSSASRLR 472
           LF++T LAG G+   + F     S LR
Sbjct: 101 LFMITGLAG-GLSTFSTFTAELFSLLR 126

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>SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 (SNAPc subunit|
           4) (snRNA-activating protein complex 190 kDa subunit)
           (SNAPc 190 kDa subunit) (Proximal sequence
           element-binding transcription factor alpha subunit)
           (PSE-binding factor alpha
          Length = 1469

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = -3

Query: 478 PDAKS*CRGGSKRCDPADAVPGEGGEQEQVPALERGAV 365
           P   S  +GGSK      A PGE     QVPA   G V
Sbjct: 601 PKGSSASQGGSKEASTTAAAPGEETSPVQVPARAHGPV 638

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>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)|
          Length = 268

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 13  APVPNTTTSTTPEHVPLPSPLPGDVVAFLGPLAEP 117
           +P P+ + S +P   P  +P P D VA L P + P
Sbjct: 196 SPSPSLSKSPSPSESPSLAPSPSDSVASLAPSSSP 230

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>MCH1_CANAL (Q59MJ2) Probable transporter MCH1|
          Length = 436

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +2

Query: 164 FPVYSSQLKELKGISQVQLNFLAFASDAGKLFGWFSGVAALYVPLPLVAFVGASFG 331
           F +Y+S   E+ G+S +Q+N ++  S  G           +Y  LP++ ++  S+G
Sbjct: 46  FTLYTSSFHEVLGLSYLQINMISSLSALG-----------MYFCLPVLGYLADSYG 90

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>TFEB_MOUSE (Q9R210) Transcription factor EB|
          Length = 475

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 22  PNTTTSTTPEHVPLPSPLPGDVVAFLGPLAEPRWDHL 132
           P T    TP H   P P+PG+V+     L  P   HL
Sbjct: 47  PPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHL 83

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>TLE1_XENLA (O42469) Enhancer of split groucho-like protein 1|
          Length = 767

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 14  LQCQTPPPAPPQSTYRSHLLSPEMSSPSSAHWLSLVGTIWLQTINGPNS 160
           LQ + PPPA P S   S  +SP  S    +  +   GT  L++ + PNS
Sbjct: 284 LQRKDPPPASPNSMTSSSSVSPSRSKDIPSQQVEKAGTPGLKS-STPNS 331

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>GRIK2_MOUSE (P39087) Glutamate receptor, ionotropic kainate 2 precursor|
           (Glutamate receptor 6) (GluR-6) (GluR6) (Glutamate
           receptor beta-2) (GluR beta-2) (Fragment)
          Length = 889

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 83  MSSPSSAHWLSLVGTIWLQTINGPNSDFPVYSSQLKELKGISQV 214
           MS    AHW  L G I     NG  +DF +    LKE +G+ ++
Sbjct: 360 MSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKE-EGLEKI 402

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>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
           chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 24  KHHHQHHPRARTAP 65
           KHHH HHP+ + AP
Sbjct: 738 KHHHHHHPQMQPAP 751

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>GRIK2_RAT (P42260) Glutamate receptor, ionotropic kainate 2 precursor|
           (Glutamate receptor 6) (GluR-6) (GluR6)
          Length = 908

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 83  MSSPSSAHWLSLVGTIWLQTINGPNSDFPVYSSQLKELKGISQV 214
           MS    AHW  L G I     NG  +DF +    LKE +G+ ++
Sbjct: 360 MSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKE-EGLEKI 402

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>GRIK2_HUMAN (Q13002) Glutamate receptor, ionotropic kainate 2 precursor|
           (Glutamate receptor 6) (GluR-6) (GluR6) (Excitatory
           amino acid receptor 4) (EAA4)
          Length = 908

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 83  MSSPSSAHWLSLVGTIWLQTINGPNSDFPVYSSQLKELKGISQV 214
           MS    AHW  L G I     NG  +DF +    LKE +G+ ++
Sbjct: 360 MSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKE-EGLEKI 402

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>TFEB_HUMAN (P19484) Transcription factor EB|
          Length = 476

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 22  PNTTTSTTPEHVPLPSPLPGDVVAFLGPLAEPRWDHL 132
           P T    TP H   P P+PG+V+     L  P   HL
Sbjct: 48  PPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHL 84

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>PATL3_ARATH (Q56Z59) Patellin-3|
          Length = 490

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 13 APVPNTTTSTTPEHVPLPSPLPGDV 87
          A  P TTT  TPE +P PS  P +V
Sbjct: 2  AEEPTTTTLVTPEKLPSPSLTPSEV 26

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>GNPTA_MOUSE (Q69ZN6) N-acetylglucosamine-1-phosphotransferase subunits|
           alpha/beta precursor (EC 2.7.8.17)
           (GlcNAc-1-phosphotransferase alpha/beta subunits)
           (UDP-N-acetylglucosamine-1-phosphotransferase alpha/beta
           subunits) (Stealth protein GNPTAB) [Conta
          Length = 1235

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
 Frame = -1

Query: 243 SEAKARKLSCTWEMPLSSLSCDE*TGKSELGPLMVCSQMVPTRLSQWAEEGDDISGERRW 64
           S +K +K+  TW +P  +  C     K        C +        W  +G D SG    
Sbjct: 422 SHSKGQKVYLTWPVPNCAEGCPGSWIKDGY-----CDKACNNSACDW--DGGDCSGNTAG 474

Query: 63  ERYVLWGGAGGGV---WHW 16
            R+V  GG  G +    HW
Sbjct: 475 NRFVAGGGGTGNIGAGQHW 493

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>NPBW2_BOVIN (Q8MJV2) Neuropeptides B/W receptor type 2 (G-protein coupled|
           receptor 8)
          Length = 336

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 281 ALYVPLPLVAFVGASFGLVG-YGVQYLFLDSPALK-CWHLFLLTALAGNGI 427
           ALYV LP+V  V  + GLVG   V  + L +P +K   H+F+L     +G+
Sbjct: 43  ALYVLLPVVYSVICAVGLVGNAAVICVILRAPKMKTVTHVFILNLAIADGL 93

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>GNPTA_HUMAN (Q3T906) N-acetylglucosamine-1-phosphotransferase subunits|
           alpha/beta precursor (EC 2.7.8.17)
           (GlcNAc-1-phosphotransferase alpha/beta subunits)
           (UDP-N-acetylglucosamine-1-phosphotransferase alpha/beta
           subunits) (Stealth protein GNPTAB) [Conta
          Length = 1256

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 19/73 (26%), Positives = 28/73 (38%)
 Frame = -1

Query: 243 SEAKARKLSCTWEMPLSSLSCDE*TGKSELGPLMVCSQMVPTRLSQWAEEGDDISGERRW 64
           S +K +K+  TW +P  +  C     K        C +        W  +G D SG    
Sbjct: 422 SHSKGQKVYLTWPVPNCAEGCPGSWIKDGY-----CDKACNNSACDW--DGGDCSGNSGG 474

Query: 63  ERYVLWGGAGGGV 25
            RY+  GG  G +
Sbjct: 475 SRYIAGGGGTGSI 487

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>TOM1_ASHGO (Q756G2) Probable E3 ubiquitin protein ligase TOM1 (EC 6.3.2.-)|
          Length = 3258

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 197  KGISQVQLNFLAFASDAGKLFGWFSGVAALYV 292
            K I +  ++     ++AGKLFGWF  +++L V
Sbjct: 1771 KAIKEAGVSAKTIDANAGKLFGWFHLISSLLV 1802

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>LPP_MOUSE (Q8BFW7) Lipoma-preferred partner homolog|
          Length = 613

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 5   LLELQCQTP-PPAPPQSTYRSHLLSPEMSSPSSAH 106
           L +L+C +P  P PPQ +  S + SP +S+P + H
Sbjct: 129 LADLECSSPYKPRPPQGS-ASSIASPPVSTPVTGH 162

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>LPP_RAT (Q5XI07) Lipoma-preferred partner homolog|
          Length = 632

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 5   LLELQCQTP--PPAPPQSTYRSHLLSPEMSSPSSAH 106
           L +L+C +P  P APP S+  S + SP +S+P + H
Sbjct: 129 LADLECSSPYKPRAPPGSS--SSIASPPVSTPVTGH 162

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>CREA_GIBFU (O94131) DNA-binding protein creA (Carbon catabolite repressor)|
          Length = 420

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 339 PTSPNE-APTKATSGRGT*SAATPENQPKSLPASEAKARKLSCTWEMP 199
           P SPN  AP+  T    + S  TP++ P + PA   + R  S  +E+P
Sbjct: 276 PNSPNSTAPSSPTFSHDSLSP-TPDHTPIATPAHSPRLRPFSTGYELP 322

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>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4|
           (Trithorax homolog 2)
          Length = 2715

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 26  TPPPAPPQSTYRSHLLSPEMSSPSSAH 106
           +PPPAP  S+ R  LL     +PS AH
Sbjct: 632 SPPPAPATSSRRPLLLRAPQFTPSEAH 658


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,393,521
Number of Sequences: 219361
Number of extensions: 1120401
Number of successful extensions: 7537
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 6134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7398
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result