ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast78g10 |
|---|---|
| Clone Library Name | barley_pub |
>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)| Length = 1513 Score = 32.3 bits (72), Expect = 0.49 Identities = 23/81 (28%), Positives = 31/81 (38%) Frame = +2 Query: 5 TINRLTLSVPNPTTSTITSVLPVPRFPCPSESSTS*QPWTARATPXXXXXXXXXXXXXXX 184 T + LT S +PTTS ITS + P S +S + P T+ +P Sbjct: 1414 TTSPLTSSATSPTTSHITSTVSPTTSPTTSTTSPTTSPTTSTTSPTTSTTSPTPSPTTST 1473 Query: 185 TSIPRRSTAPRHSRDRRSPIP 247 T S P + SP P Sbjct: 1474 T-----SPTPSPTTSTTSPTP 1489
>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556| Length = 348 Score = 29.6 bits (65), Expect = 3.2 Identities = 27/71 (38%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Frame = +2 Query: 59 SVLPVPRFPCPSESSTS*QPWTARATPXXXXXXXXXXXXXXXTSIPRRST--APR-HSRD 229 S+LP PR P S SS A A P T +PRR+T APR SR Sbjct: 230 SLLPAPRPPASSASSPQ---AAAPAAP-------------SATRLPRRTTPSAPRPSSRP 273 Query: 230 RRSPIPRCQRP 262 R PIP + P Sbjct: 274 ARPPIPAARPP 284
>GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(II) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 666 Score = 29.3 bits (64), Expect = 4.1 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 187 FYPPTEHGTAPQPGSQVSYPPMPKAM 264 ++PP E P P SQ YP MP A+ Sbjct: 211 YWPPAELQYLPPPESQYGYPGMPPAL 236
>HXC10_MOUSE (P31257) Homeobox protein Hox-C10 (Hox-3.6)| Length = 342 Score = 29.3 bits (64), Expect = 4.1 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +1 Query: 193 PPTEHGTAPQPGSQVSYPPMPKA 261 P TEH +PQ G +VS+P PK+ Sbjct: 182 PRTEHLESPQLGGKVSFPETPKS 204
>PKN2_CORGL (Q8NU97) Serine/threonine protein kinases pknA (EC 2.7.11.1)| Length = 469 Score = 28.9 bits (63), Expect = 5.4 Identities = 18/59 (30%), Positives = 21/59 (35%) Frame = +2 Query: 38 PTTSTITSVLPVPRFPCPSESSTS*QPWTARATPXXXXXXXXXXXXXXXTSIPRRSTAP 214 PT ST T P SE STS +P T T S+P + AP Sbjct: 393 PTRSTFTEPETTSHRPTTSEESTSEEPTTEAPTSSRTVPQIPTSTPRTSASVPVETNAP 451
>PER1_RAT (Q8CHI5) Period circadian protein 1 (rPER1) (Fragment)| Length = 1244 Score = 28.9 bits (63), Expect = 5.4 Identities = 19/75 (25%), Positives = 29/75 (38%) Frame = +1 Query: 193 PPTEHGTAPQPGSQVSYPPMPKAMXXXXXXXXXXXXXXXXXXXLTQQAMELEGKYAAPQP 372 PPT +P P S PP P +++ EG AA P Sbjct: 942 PPTPASHSPSP-SLPPPPPSPPHRPDSPLFNSRCSSPLQLNLLQLEESPRTEGGAAAGGP 1000 Query: 373 GTGATPSPPTQQAVD 417 G+ A P PP++++ + Sbjct: 1001 GSSAGPLPPSEESAE 1015
>CPC_CUCSA (P29602) Cucumber peeling cupredoxin (CPC) (Stellacyanin)| Length = 137 Score = 28.9 bits (63), Expect = 5.4 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +2 Query: 20 TLSVPNPTTSTITSVLPVPRFPCPSES 100 T+S+P P++S +SV+P P P PS S Sbjct: 111 TVSMPPPSSSPPSSVMPPPVMPPPSPS 137
>ATS16_MOUSE (Q69Z28) ADAMTS-16 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 16) (ADAM-TS 16) (ADAM-TS16) Length = 1222 Score = 28.9 bits (63), Expect = 5.4 Identities = 21/76 (27%), Positives = 26/76 (34%) Frame = +2 Query: 35 NPTTSTITSVLPVPRFPCPSESSTS*QPWTARATPXXXXXXXXXXXXXXXTSIPRRSTAP 214 NP T +T ++P PCPS S W+ S P R T Sbjct: 908 NPKTRPVTGLVPCKVSPCPSSWSVG--NWSV----------CSRTCGGGTQSRPVRCTRR 955 Query: 215 RHSRDRRSPIPRCQRP 262 H RD P C +P Sbjct: 956 AHYRDESIPASLCPQP 971
>PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacemaker protein| Rigui) (hPER) Length = 1290 Score = 28.9 bits (63), Expect = 5.4 Identities = 19/75 (25%), Positives = 27/75 (36%) Frame = +1 Query: 193 PPTEHGTAPQPGSQVSYPPMPKAMXXXXXXXXXXXXXXXXXXXLTQQAMELEGKYAAPQP 372 PPT +P P S + PP P ++ EG A P Sbjct: 946 PPTPASHSPSP-SLPALPPSPPHRPDSPLFNSRCSSPLQLNLLQLEELPRAEGAAVAGGP 1004 Query: 373 GTGATPSPPTQQAVD 417 G+ A P PP+ +A + Sbjct: 1005 GSSAGPPPPSAEAAE 1019
>GAK5_HUMAN (P62684) HERV-K_19p13.11 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K113 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 187 FYPPTEHGTAPQPGSQVSYPPMPKA 261 ++PP E P P SQ YP MP A Sbjct: 211 YWPPAELQYQPPPESQYGYPGMPPA 235
>GAK4_HUMAN (P63126) HERV-K_6q14.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K109 Gag protein) (HERV-K(C6) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 187 FYPPTEHGTAPQPGSQVSYPPMPKA 261 ++PP E P P SQ YP MP A Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPA 235
>GAK2_HUMAN (Q7LDI9) HERV-K_7p22.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(HML-2.HOM) Gag protein) (HERV-K108 Gag protein) (HERV-K(C7) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 187 FYPPTEHGTAPQPGSQVSYPPMPKA 261 ++PP E P P SQ YP MP A Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPA 235
>GAK1_HUMAN (P62683) HERV-K_12q14.1 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 187 FYPPTEHGTAPQPGSQVSYPPMPKA 261 ++PP E P P SQ YP MP A Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPA 235
>GAK12_HUMAN (P63130) HERV-K_1q22 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K102 Gag protein) (HERV-K(III) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 187 FYPPTEHGTAPQPGSQVSYPPMPKA 261 ++PP E P P SQ YP MP A Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPA 235
>GAK11_HUMAN (P63145) HERV-K_22q11.21 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K101 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 187 FYPPTEHGTAPQPGSQVSYPPMPKA 261 ++PP E P P SQ YP MP A Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPA 235
>GAK10_HUMAN (P87889) HERV-K_5q33.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K10 Gag protein) (HERV-K107 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 187 FYPPTEHGTAPQPGSQVSYPPMPKA 261 ++PP E P P SQ YP MP A Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPA 235
>GAK6_HUMAN (P62685) HERV-K_8p23.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K115 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 646 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 187 FYPPTEHGTAPQPGSQVSYPPMPKA 261 ++PP E P P SQ YP MP A Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPA 235
>PLS1_HUMAN (O15162) Phospholipid scramblase 1 (PL scramblase 1)| (Ca(2+)-dependent phospholipid scramblase 1) (Erythrocyte phospholipid scramblase) (MmTRA1b) Length = 318 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 4/26 (15%) Frame = +1 Query: 190 YPPTEH----GTAPQPGSQVSYPPMP 255 YPPT G + PG QVSYPP P Sbjct: 25 YPPTAFQGPPGYSGYPGPQVSYPPPP 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,943,981 Number of Sequences: 219361 Number of extensions: 937831 Number of successful extensions: 5041 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4414 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5027 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
