ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast78g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HIS2_THET2 (P62350) Histidine biosynthesis bifunctional protein ... 29 3.0
2FULI_ACHFU (P35905) Fulicin precursor [Contains: Fulicin; Fucili... 28 5.1
3RSTA_ECOLI (P52108) Transcriptional regulatory protein rstA 28 6.7

>HIS2_THET2 (P62350) Histidine biosynthesis bifunctional protein hisIE|
           [Includes: Phosphoribosyl-AMP cyclohydrolase (EC
           3.5.4.19) (PRA-CH); Phosphoribosyl-ATP pyrophosphatase
           (EC 3.6.1.31) (PRA-PH)]
          Length = 214

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 20  TVAPANTKVTLATFDLPYITFYYNQKLLLYRLAEGAGDFQDVTARMVDALGDAL 181
           T+A AN +    T      TF+   +  L+R  E +G  Q+V   ++D  GDA+
Sbjct: 28  TLAYANREALEETLRTRRSTFFSRSRQALWRKGETSGHTQEVVEVLLDCDGDAV 81



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>FULI_ACHFU (P35905) Fulicin precursor [Contains: Fulicin; Fucilin gene-related|
           peptide 1 (FGRP-1); Fucilin gene-related peptide 2
           (FGRP-2); Fucilin gene-related peptide 3 (FGRP-3);
           Fucilin gene-related peptide 4 (FGRP-4); Fucilin
           gene-related peptide 5 (
          Length = 357

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 11  GTRTVAPANTKVTLATFDLPYITFYYNQKLLLYRLAEGAGDFQDVTARMVDALG 172
           G  TV+P++TK++     LPY++            +  AGD  DV  R  + LG
Sbjct: 265 GVFTVSPSSTKISFDDNYLPYLS------------SVDAGDLSDVNKRYAEFLG 306



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>RSTA_ECOLI (P52108) Transcriptional regulatory protein rstA|
          Length = 242

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 11  GTRTVAPANTKVTLATFDLPYITFYYNQKLLLYRLAEGAGDFQDVTARMVDALG 172
           GT T+ P N  VTLA  ++   T  +    LL+ LA  AG   D  A + +  G
Sbjct: 145 GTLTIDPINRVVTLANTEISLSTADFE---LLWELATHAGQIMDRDALLKNLRG 195


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,445,585
Number of Sequences: 219361
Number of extensions: 169653
Number of successful extensions: 656
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 80,573,946
effective HSP length: 36
effective length of database: 72,676,950
effective search space used: 1744246800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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