ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast78g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483799.1| Oryza sativa (japonica cultivar-group), mRNA 117 1e-23
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 117 1e-23
3dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic D... 117 1e-23
4dbj|AK109443.2| Oryza sativa (japonica cultivar-group) cDNA clon... 117 1e-23
5dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic D... 117 1e-23
6dbj|AK063515.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 1e-23
7gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 44 0.15
8ref|XM_470761.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.58
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.58
10gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 geno... 42 0.58
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.58
12dbj|AK069332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.58
13emb|BX248355.1| Corynebacterium diphtheriae gravis NCTC13129, co... 40 2.3
14emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete ... 40 2.3
15gb|AC079341.6| Homo sapiens BAC clone RP11-63B13 from 4, complet... 40 2.3
16gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 2.3
17ref|XM_511699.1| PREDICTED: Pan troglodytes similar to rhomboid,... 38 9.1
18ref|XM_531504.1| PREDICTED: Pan troglodytes LOC474056 (LOC474056... 38 9.1
19gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 38 9.1
20gb|AY500247.1| Homo sapiens rhomboid veinlet-like 5 (RHBDL5) mRN... 38 9.1
21ref|XM_613157.2| PREDICTED: Bos taurus similar to NudC domain co... 38 9.1
22ref|XM_415618.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ... 38 9.1
23ref|XM_596084.2| PREDICTED: Bos taurus similar to rhomboid, vein... 38 9.1
24gb|BC052497.1| Mus musculus RIKEN cDNA 2010007H12 gene, mRNA (cD... 38 9.1
25ref|NM_001005498.2| Homo sapiens rhomboid 5 homolog 2 (Drosophil... 38 9.1
26ref|NM_024599.3| Homo sapiens rhomboid 5 homolog 2 (Drosophila) ... 38 9.1
27ref|XM_676659.1| Aspergillus nidulans FGSC A4 hypothetical prote... 38 9.1
28ref|XM_985991.1| PREDICTED: Mus musculus WD repeat domain 65 (LO... 38 9.1
29ref|XM_976378.1| PREDICTED: Mus musculus similar to CG4329-PA, i... 38 9.1
30ref|XM_357389.4| PREDICTED: Mus musculus WD repeat domain 65 (LO... 38 9.1
31gb|AC007259.4| Arabidopsis thaliana chromosome I BAC T28P6 genom... 38 9.1
32ref|XM_540451.2| PREDICTED: Canis familiaris similar to rhomboid... 38 9.1
33gb|BC035829.1| Homo sapiens rhomboid 5 homolog 2 (Drosophila), m... 38 9.1
34gb|BC016034.1| Homo sapiens rhomboid 5 homolog 2 (Drosophila), t... 38 9.1
35emb|X63974.1|RCDCTP R capsulatus dctP gene for C4-dicarboxylase ... 38 9.1
36emb|CR555306.1| Azoarcus sp. EbN1 complete genome 38 9.1
37emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete ... 38 9.1
38emb|BX640425.1| Bordetella parapertussis strain 12822, complete ... 38 9.1
39emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete ... 38 9.1
40emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cl... 38 9.1
41emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for bi... 38 9.1
42emb|AJ132792.1|MHO132792 Mycoplasma hominis dnaK gene 38 9.1
43emb|CR937564.1| Single read from an extremity of a cDNA clone ma... 38 9.1
44gb|AC015802.21| Homo sapiens chromosome 17, clone RP11-666A8, co... 38 9.1
45gb|BC114136.1| Bos taurus cDNA clone MGC:137347 IMAGE:8171358, c... 38 9.1
46gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 38 9.1
47dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 38 9.1
48ref|NM_027242.1| Mus musculus RIKEN cDNA 2010007H12 gene (201000... 38 9.1
49gb|CP000249.1| Frankia sp. CcI3, complete genome 38 9.1
50emb|BX934328.2| Gallus gallus finished cDNA, clone ChEST670p17 38 9.1
51emb|BX936139.2| Gallus gallus finished cDNA, clone ChEST146l10 38 9.1
52dbj|AK008184.1| Mus musculus adult male small intestine cDNA, RI... 38 9.1
53dbj|AK008148.1| Mus musculus adult male small intestine cDNA, RI... 38 9.1
54emb|BX321881.17| Mouse DNA sequence from clone RP23-186M20 on ch... 38 9.1
55emb|BX935216.2| Gallus gallus finished cDNA, clone ChEST955f12 38 9.1
56emb|BX933007.1| Gallus gallus finished cDNA, clone ChEST908m17 38 9.1
57emb|BX933112.1| Gallus gallus finished cDNA, clone ChEST915j16 38 9.1
58emb|BX929518.1| Gallus gallus finished cDNA, clone ChEST183k8 38 9.1
59gb|AE004958.1| Pseudomonas aeruginosa PAO1, section 519 of 529 o... 38 9.1
60ref|XM_342896.2| PREDICTED: Rattus norvegicus similar to hypothe... 38 9.1
61gb|AF005842.1|AF005842 Rhodobacter sphaeroides C4-dicarboxylate ... 38 9.1
62dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 38 9.1
63dbj|AK074034.1| Homo sapiens mRNA for FLJ00080 protein 38 9.1
64gb|BT021830.1| Bos taurus KIAA1068 protein (KIAA1068), mRNA, com... 38 9.1
65dbj|AK025994.1| Homo sapiens cDNA: FLJ22341 fis, clone HRC06032 38 9.1
66gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 38 9.1
67emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 38 9.1
68gb|AF009956.1|AF009956 Pseudomonas aeruginosa phosphomannose iso... 38 9.1
69gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 38 9.1
70gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 38 9.1
71gb|AC125063.4| Mus musculus BAC clone RP23-425N17 from 5, comple... 38 9.1
72gb|AY823670.1| Mus musculus 2010007H12Rik (2010007H12Rik), BIPL1... 38 9.1
73gb|AC113434.34| Mus musculus strain C57BL/6J clone rp23-456n12 m... 38 9.1
74emb|AL833680.1|HSM804993 Homo sapiens mRNA; cDNA DKFZp667E1422 (... 38 9.1 
>ref|XM_483799.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1710

 Score =  117 bits (59), Expect = 1e-23
 Identities = 65/67 (97%)
 Strand = Plus / Plus

                                                                       
Query: 49  cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 108
           ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 235

                  
Query: 109 ccgcctc 115
           |||||||
Sbjct: 236 ccgcctc 242
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  117 bits (59), Expect = 1e-23
 Identities = 65/67 (97%)
 Strand = Plus / Minus

                                                                            
Query: 49       cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 108
                ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 28157913 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 28157854

                       
Query: 109      ccgcctc 115
                |||||||
Sbjct: 28157853 ccgcctc 28157847
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>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0604E01
          Length = 159049

 Score =  117 bits (59), Expect = 1e-23
 Identities = 65/67 (97%)
 Strand = Plus / Minus

                                                                          
Query: 49     cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 108
              ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 155408 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 155349

                     
Query: 109    ccgcctc 115
              |||||||
Sbjct: 155348 ccgcctc 155342
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>dbj|AK109443.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A03, full
           insert sequence
          Length = 1649

 Score =  117 bits (59), Expect = 1e-23
 Identities = 65/67 (97%)
 Strand = Plus / Plus

                                                                       
Query: 49  cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 108
           ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 210

                  
Query: 109 ccgcctc 115
           |||||||
Sbjct: 211 ccgcctc 217
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>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0543D10
          Length = 134866

 Score =  117 bits (59), Expect = 1e-23
 Identities = 65/67 (97%)
 Strand = Plus / Minus

                                                                         
Query: 49    cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 108
             ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41386 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 41327

                    
Query: 109   ccgcctc 115
             |||||||
Sbjct: 41326 ccgcctc 41320
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>dbj|AK063515.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G07, full
           insert sequence
          Length = 2418

 Score =  117 bits (59), Expect = 1e-23
 Identities = 65/67 (97%)
 Strand = Plus / Plus

                                                                       
Query: 49  cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 108
           ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 292

                  
Query: 109 ccgcctc 115
           |||||||
Sbjct: 293 ccgcctc 299
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 58      cttcgacctgccctacatcacc 79
               ||||||||||||||||||||||
Sbjct: 2927589 cttcgacctgccctacatcacc 2927610
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>ref|XM_470761.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1375

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 68  ccctacatcaccttctactac 88
           |||||||||||||||||||||
Sbjct: 501 ccctacatcaccttctactac 521
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 68       ccctacatcaccttctactac 88
                |||||||||||||||||||||
Sbjct: 14939615 ccctacatcaccttctactac 14939595
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>gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 genomic sequence, complete
              sequence
          Length = 137184

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 68     ccctacatcaccttctactac 88
              |||||||||||||||||||||
Sbjct: 103147 ccctacatcaccttctactac 103167
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 68       ccctacatcaccttctactac 88
                |||||||||||||||||||||
Sbjct: 14934149 ccctacatcaccttctactac 14934129
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>dbj|AK069332.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010L17, full
           insert sequence
          Length = 1375

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 68  ccctacatcaccttctactac 88
           |||||||||||||||||||||
Sbjct: 501 ccctacatcaccttctactac 521
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>emb|BX248355.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
              2/8
          Length = 341553

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    gacgtcaccgcgcgcatggt 159
              ||||||||||||||||||||
Sbjct: 162797 gacgtcaccgcgcgcatggt 162816
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>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29
          Length = 308050

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 159   tcgacgccctcggggacgcgctcg 182
             ||||||||||||||||| ||||||
Sbjct: 82427 tcgacgccctcggggactcgctcg 82450
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>gb|AC079341.6| Homo sapiens BAC clone RP11-63B13 from 4, complete sequence
          Length = 149819

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 64     cctgccctacatcaccttctacta 87
              |||||||||| |||||||||||||
Sbjct: 140928 cctgccctacttcaccttctacta 140951
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 117     cggaaggcgccggcgatttc 136
               ||||||||||||||||||||
Sbjct: 1521017 cggaaggcgccggcgatttc 1520998
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>ref|XM_511699.1| PREDICTED: Pan troglodytes similar to rhomboid, veinlet-like 6
            isoform 1; rhomboid-like protein 6; rhomboid veinlet-like
            5 (LOC454905), mRNA
          Length = 2812

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   cctgccctacatcaccttc 82
            |||||||||||||||||||
Sbjct: 2602 cctgccctacatcaccttc 2620
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>ref|XM_531504.1| PREDICTED: Pan troglodytes LOC474056 (LOC474056), mRNA
          Length = 5160

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 14   acccgcacggtggcaccgg 32
            |||||||||||||||||||
Sbjct: 3478 acccgcacggtggcaccgg 3460
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 58      cttcgacctgccctacatc 76
               |||||||||||||||||||
Sbjct: 2660010 cttcgacctgccctacatc 2660028
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>gb|AY500247.1| Homo sapiens rhomboid veinlet-like 5 (RHBDL5) mRNA, complete cds
          Length = 3118

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   cctgccctacatcaccttc 82
            |||||||||||||||||||
Sbjct: 2344 cctgccctacatcaccttc 2362
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>ref|XM_613157.2| PREDICTED: Bos taurus similar to NudC domain containing protein 3
           (LOC533678), partial mRNA
          Length = 2525

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 75  tcaccttctactacaaccagaagctgc 101
           |||||||| ||||| ||||||||||||
Sbjct: 725 tcaccttcgactaccaccagaagctgc 751
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>ref|XM_415618.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 4732465I17
            (LOC417358), mRNA
          Length = 2621

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   cctgccctacatcaccttc 82
            |||||||||||||||||||
Sbjct: 2411 cctgccctacatcaccttc 2429
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>ref|XM_596084.2| PREDICTED: Bos taurus similar to rhomboid, veinlet-like 6 isoform 2
            (LOC517903), mRNA
          Length = 4406

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   cctgccctacatcaccttc 82
            |||||||||||||||||||
Sbjct: 3258 cctgccctacatcaccttc 3276
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>gb|BC052497.1| Mus musculus RIKEN cDNA 2010007H12 gene, mRNA (cDNA clone MGC:62925
           IMAGE:1429227), complete cds
          Length = 968

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 96  agctgctcctctaccgcct 114
           |||||||||||||||||||
Sbjct: 474 agctgctcctctaccgcct 456
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>ref|NM_001005498.2| Homo sapiens rhomboid 5 homolog 2 (Drosophila) (RHBDF2), transcript
            variant 2, mRNA
          Length = 3532

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   cctgccctacatcaccttc 82
            |||||||||||||||||||
Sbjct: 2567 cctgccctacatcaccttc 2585
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>ref|NM_024599.3| Homo sapiens rhomboid 5 homolog 2 (Drosophila) (RHBDF2), transcript
            variant 1, mRNA
          Length = 3619

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   cctgccctacatcaccttc 82
            |||||||||||||||||||
Sbjct: 2654 cctgccctacatcaccttc 2672
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>ref|XM_676659.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8482.2), mRNA
          Length = 2163

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 75  tcaccttctactacaacca 93
           |||||||||||||||||||
Sbjct: 209 tcaccttctactacaacca 227
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>ref|XM_985991.1| PREDICTED: Mus musculus WD repeat domain 65 (LOC384050), mRNA
          Length = 2778

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 87   acaaccagaagctgctcct 105
            |||||||||||||||||||
Sbjct: 2348 acaaccagaagctgctcct 2366
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>ref|XM_976378.1| PREDICTED: Mus musculus similar to CG4329-PA, isoform A (LOC674677),
            mRNA
          Length = 2778

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 87   acaaccagaagctgctcct 105
            |||||||||||||||||||
Sbjct: 2348 acaaccagaagctgctcct 2366
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>ref|XM_357389.4| PREDICTED: Mus musculus WD repeat domain 65 (LOC384050), mRNA
          Length = 2778

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 87   acaaccagaagctgctcct 105
            |||||||||||||||||||
Sbjct: 2348 acaaccagaagctgctcct 2366
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>gb|AC007259.4| Arabidopsis thaliana chromosome I BAC T28P6 genomic sequence, complete
             sequence
          Length = 97146

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 81    tctactacaaccagaagct 99
             |||||||||||||||||||
Sbjct: 27193 tctactacaaccagaagct 27211
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>ref|XM_540451.2| PREDICTED: Canis familiaris similar to rhomboid, veinlet-like 6
            isoform 2 (LOC483332), mRNA
          Length = 2745

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   cctgccctacatcaccttc 82
            |||||||||||||||||||
Sbjct: 2532 cctgccctacatcaccttc 2550
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>gb|BC035829.1| Homo sapiens rhomboid 5 homolog 2 (Drosophila), mRNA (cDNA clone
            IMAGE:5582422), partial cds
          Length = 2706

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   cctgccctacatcaccttc 82
            |||||||||||||||||||
Sbjct: 1741 cctgccctacatcaccttc 1759
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>gb|BC016034.1| Homo sapiens rhomboid 5 homolog 2 (Drosophila), transcript variant 1,
            mRNA (cDNA clone MGC:17902 IMAGE:3910543), complete cds
          Length = 3596

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   cctgccctacatcaccttc 82
            |||||||||||||||||||
Sbjct: 2635 cctgccctacatcaccttc 2653
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>emb|X63974.1|RCDCTP R capsulatus dctP gene for C4-dicarboxylase binding protein
          Length = 4500

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 58  cttcgacctgccctacatc 76
           |||||||||||||||||||
Sbjct: 336 cttcgacctgccctacatc 354
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 52      cgccaccttcgacctgccctacatcac 78
               ||||| ||||||||||| |||||||||
Sbjct: 2009934 cgccaacttcgacctgcgctacatcac 2009908
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>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16
          Length = 346362

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 148    cgcgcgcatggtcgacgcc 166
              |||||||||||||||||||
Sbjct: 156653 cgcgcgcatggtcgacgcc 156671
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>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14
          Length = 348257

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 148   cgcgcgcatggtcgacgcc 166
             |||||||||||||||||||
Sbjct: 69459 cgcgcgcatggtcgacgcc 69477
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>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29
          Length = 293050

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 158   gtcgacgccctcggggacg 176
             |||||||||||||||||||
Sbjct: 47648 gtcgacgccctcggggacg 47666
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>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster
          Length = 89976

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 108   accgcctcgcggaaggcgccggc 130
             ||||||||| |||||||||||||
Sbjct: 78762 accgcctcgtggaaggcgccggc 78740
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>emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for biosynthesis of
             glycopeptide antibiotic teicoplanin
          Length = 89713

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 108   accgcctcgcggaaggcgccggc 130
             ||||||||| |||||||||||||
Sbjct: 80580 accgcctcgtggaaggcgccggc 80558
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>emb|AJ132792.1|MHO132792 Mycoplasma hominis dnaK gene
          Length = 3077

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 72   acatcaccttctactacaa 90
            |||||||||||||||||||
Sbjct: 1894 acatcaccttctactacaa 1876
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>emb|CR937564.1| Single read from an extremity of a cDNA clone made from Aedes
           aegypti total adult females. 5-prime end of clone
           KW0AAB1YN06AAM1 from strain Liverpool of Aedes aegypti
           (yellow fever mosquito)
          Length = 798

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 81  tctactacaaccagaagctgctcctct 107
           |||||||||||| | ||||||||||||
Sbjct: 648 tctactacaacccgcagctgctcctct 674
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>gb|AC015802.21| Homo sapiens chromosome 17, clone RP11-666A8, complete sequence
          Length = 205753

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 64     cctgccctacatcaccttc 82
              |||||||||||||||||||
Sbjct: 147557 cctgccctacatcaccttc 147575
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>gb|BC114136.1| Bos taurus cDNA clone MGC:137347 IMAGE:8171358, complete cds
          Length = 2768

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 75  tcaccttctactacaaccagaagctgc 101
           |||||||| ||||| ||||||||||||
Sbjct: 947 tcaccttcgactaccaccagaagctgc 973
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 3       cggtcaccggcacccgcac 21
               |||||||||||||||||||
Sbjct: 2048842 cggtcaccggcacccgcac 2048824
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 58     cttcgacctgccctacatc 76
              |||||||||||||||||||
Sbjct: 955466 cttcgacctgccctacatc 955448
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>ref|NM_027242.1| Mus musculus RIKEN cDNA 2010007H12 gene (2010007H12Rik), mRNA
          Length = 939

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 96  agctgctcctctaccgcct 114
           |||||||||||||||||||
Sbjct: 499 agctgctcctctaccgcct 481
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 161     gacgccctcggggacgcgctcgc 183
               ||||| |||||||||||||||||
Sbjct: 4052654 gacgcgctcggggacgcgctcgc 4052632
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>emb|BX934328.2| Gallus gallus finished cDNA, clone ChEST670p17
          Length = 1090

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 75  tcaccttctactacaaccagaagctgc 101
           |||||||| ||||| ||||||||||||
Sbjct: 682 tcaccttcgactaccaccagaagctgc 708
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>emb|BX936139.2| Gallus gallus finished cDNA, clone ChEST146l10
          Length = 1080

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 75  tcaccttctactacaaccagaagctgc 101
           |||||||| ||||| ||||||||||||
Sbjct: 696 tcaccttcgactaccaccagaagctgc 722
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>dbj|AK008184.1| Mus musculus adult male small intestine cDNA, RIKEN full-length
           enriched library, clone:2010011D20 product:hypothetical
           Proline-rich region profile containing protein, full
           insert sequence
          Length = 936

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 96  agctgctcctctaccgcct 114
           |||||||||||||||||||
Sbjct: 495 agctgctcctctaccgcct 477
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>dbj|AK008148.1| Mus musculus adult male small intestine cDNA, RIKEN full-length
           enriched library, clone:2010007H12 product:hypothetical
           protein, full insert sequence
          Length = 939

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 96  agctgctcctctaccgcct 114
           |||||||||||||||||||
Sbjct: 499 agctgctcctctaccgcct 481
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>emb|BX321881.17| Mouse DNA sequence from clone RP23-186M20 on chromosome 4, complete
             sequence
          Length = 37781

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 87    acaaccagaagctgctcct 105
             |||||||||||||||||||
Sbjct: 14356 acaaccagaagctgctcct 14338
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>emb|BX935216.2| Gallus gallus finished cDNA, clone ChEST955f12
          Length = 1299

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 75  tcaccttctactacaaccagaagctgc 101
           |||||||| ||||| ||||||||||||
Sbjct: 916 tcaccttcgactaccaccagaagctgc 942
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>emb|BX933007.1| Gallus gallus finished cDNA, clone ChEST908m17
          Length = 1345

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 75  tcaccttctactacaaccagaagctgc 101
           |||||||| ||||| ||||||||||||
Sbjct: 941 tcaccttcgactaccaccagaagctgc 967
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>emb|BX933112.1| Gallus gallus finished cDNA, clone ChEST915j16
          Length = 1317

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 75  tcaccttctactacaaccagaagctgc 101
           |||||||| ||||| ||||||||||||
Sbjct: 914 tcaccttcgactaccaccagaagctgc 940
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>emb|BX929518.1| Gallus gallus finished cDNA, clone ChEST183k8
          Length = 905

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 75  tcaccttctactacaaccagaagctgc 101
           |||||||| ||||| ||||||||||||
Sbjct: 525 tcaccttcgactaccaccagaagctgc 551
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>gb|AE004958.1| Pseudomonas aeruginosa PAO1, section 519 of 529 of the complete
            genome
          Length = 15773

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 106  ctaccgcctcgcggaaggc 124
            |||||||||||||||||||
Sbjct: 7223 ctaccgcctcgcggaaggc 7241
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>ref|XM_342896.2| PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32000
            (LOC362577), mRNA
          Length = 4797

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 87   acaaccagaagctgctcct 105
            |||||||||||||||||||
Sbjct: 3323 acaaccagaagctgctcct 3341
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>gb|AF005842.1|AF005842 Rhodobacter sphaeroides C4-dicarboxylate binding-protein precursor
           (dctP), small integral membrane transport protein (dctQ)
           and large integral membrane transport protein (dctM)
           genes, complete cds
          Length = 3718

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 58  cttcgacctgccctacatc 76
           |||||||||||||||||||
Sbjct: 441 cttcgacctgccctacatc 459
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 7       caccggcacccgcacggtg 25
               |||||||||||||||||||
Sbjct: 1077616 caccggcacccgcacggtg 1077598
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>dbj|AK074034.1| Homo sapiens mRNA for FLJ00080 protein
          Length = 4539

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   cctgccctacatcaccttc 82
            |||||||||||||||||||
Sbjct: 3593 cctgccctacatcaccttc 3611
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>gb|BT021830.1| Bos taurus KIAA1068 protein (KIAA1068), mRNA, complete cds
          Length = 1136

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 75  tcaccttctactacaaccagaagctgc 101
           |||||||| ||||| ||||||||||||
Sbjct: 965 tcaccttcgactaccaccagaagctgc 991
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>dbj|AK025994.1| Homo sapiens cDNA: FLJ22341 fis, clone HRC06032
          Length = 2643

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   cctgccctacatcaccttc 82
            |||||||||||||||||||
Sbjct: 1679 cctgccctacatcaccttc 1697
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 158     gtcgacgccctcggggacg 176
               |||||||||||||||||||
Sbjct: 1627279 gtcgacgccctcggggacg 1627297
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 49     cctcgccaccttcgacctg 67
              |||||||||||||||||||
Sbjct: 804722 cctcgccaccttcgacctg 804704
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>gb|AF009956.1|AF009956 Pseudomonas aeruginosa phosphomannose isomerase/GDP-mannose
           pyrophosphorylase WbpW (wbpW) gene, complete cds
          Length = 1440

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 106 ctaccgcctcgcggaaggc 124
           |||||||||||||||||||
Sbjct: 394 ctaccgcctcgcggaaggc 376
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      ggtcaccggcacccgcacg 22
              |||||||||||||||||||
Sbjct: 584183 ggtcaccggcacccgcacg 584201
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 159     tcgacgccctcggggacgcgctc 181
               ||||||||||| |||||||||||
Sbjct: 2731710 tcgacgccctccgggacgcgctc 2731732
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>gb|AC125063.4| Mus musculus BAC clone RP23-425N17 from 5, complete sequence
          Length = 194931

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 96     agctgctcctctaccgcct 114
              |||||||||||||||||||
Sbjct: 106513 agctgctcctctaccgcct 106531
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>gb|AY823670.1| Mus musculus 2010007H12Rik (2010007H12Rik), BIPL1 (Bipl1), ZCWPW1
            (Zcwpw1), and PILRA (Pilra) genes, complete cds; PILRP5
            (Pilrp5) pseudogene, complete sequence; PILRB (Pilrb)
            gene, complete cds; PILRP4 (Pilrp4) pseudogene, complete
            sequence; PILRB2 (Pilrb2) gene, complete cds; PILRP3
            (Pilrp3), PILRP2 (Pilrp2), and PILRP1 (Pilrp1)
            pseudogenes, complete sequence; and CYP3A13 (Cyp3a13) and
            GJE1 (Gje1) genes, complete cds
          Length = 194414

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 96   agctgctcctctaccgcct 114
            |||||||||||||||||||
Sbjct: 6511 agctgctcctctaccgcct 6493
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>gb|AC113434.34| Mus musculus strain C57BL/6J clone rp23-456n12 map 5, complete sequence
          Length = 203821

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 96     agctgctcctctaccgcct 114
              |||||||||||||||||||
Sbjct: 134200 agctgctcctctaccgcct 134218
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>emb|AL833680.1|HSM804993 Homo sapiens mRNA; cDNA DKFZp667E1422 (from clone DKFZp667E1422)
          Length = 2682

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   cctgccctacatcaccttc 82
            |||||||||||||||||||
Sbjct: 1713 cctgccctacatcaccttc 1731


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,001,065
Number of Sequences: 3902068
Number of extensions: 1001065
Number of successful extensions: 75540
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73562
Number of HSP's gapped (non-prelim): 1978
length of query: 184
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 162
effective length of database: 17,147,199,772
effective search space: 2777846363064
effective search space used: 2777846363064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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