ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast78f11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 163 bits (82), Expect = 4e-37 Identities = 169/198 (85%) Strand = Plus / Plus Query: 110 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 169 ||||| |||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 91061 ccgagagccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgcgacggtg 91120 Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 229 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | |||||| || Sbjct: 91121 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcgccacg 91180 Query: 230 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcg 289 ||||||||||||||||| ||||||||||||| |||||||||||| | || ||||||| | Sbjct: 91181 ctctgggtggactgcgataccgggtacgtgtcgtcgtcctacgcgcgtgtcccgtgcggg 91240 Query: 290 tccaagctgtgccgcctc 307 ||||||| |||||||||| Sbjct: 91241 tccaagccgtgccgcctc 91258 Score = 151 bits (76), Expect = 2e-33 Identities = 169/200 (84%) Strand = Plus / Plus Query: 115 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 174 ||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| ||||| Sbjct: 88573 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 88632 Query: 175 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 234 |||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| || Sbjct: 88633 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 88692 Query: 235 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtccaa 294 |||||||||||| |||||||||||||| ||||| |||||| |||||||||||| |||||| Sbjct: 88693 ggtggactgcgaggccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 88752 Query: 295 gctgtgccgcctcgcgaaga 314 || |||||||||||| |||| Sbjct: 88753 gcagtgccgcctcgccaaga 88772 Score = 147 bits (74), Expect = 2e-32 Identities = 152/178 (85%) Strand = Plus / Plus Query: 110 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 169 |||||| ||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 102448 ccgagctccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatg 102507 Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 229 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | ||| || | Sbjct: 102508 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatg 102567 Query: 230 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcg 287 |||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct: 102568 ctctgggtggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgtgcggtgcg 102625 Score = 117 bits (59), Expect = 2e-23 Identities = 170/207 (82%) Strand = Plus / Plus Query: 109 cccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacggg 168 ||||||||||||| ||||||||||| |||||| |||||||| ||||||| ||||| Sbjct: 95445 cccgagcgccgtgctgctgccggtggacaaggacggcgcaacgcagcagtacgtgacgat 95504 Query: 169 cttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctc 228 ||| ||||||| ||||| || || |||| ||||||| | ||||| | |||||| Sbjct: 95505 gttctggcagcggacgccgagtgtgcccgtgaaggccgtggttgacctcgcgggcgccat 95564 Query: 229 gctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgc 288 |||||||||||||||||| ||||||||| ||| ||||| || ||| |||||||||||| Sbjct: 95565 gctctgggtggactgcgagtccgggtacgagtcgtcgtcgtatgcgcgcgtgccgtgcgg 95624 Query: 289 gtccaagctgtgccgcctcgcgaagag 315 |||||||| ||||||||||||||||| Sbjct: 95625 gtccaagccttgccgcctcgcgaagag 95651
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 163 bits (82), Expect = 4e-37 Identities = 169/198 (85%) Strand = Plus / Plus Query: 110 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 169 ||||| |||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 19490349 ccgagagccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgcgacggtg 19490408 Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 229 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | |||||| || Sbjct: 19490409 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcgccacg 19490468 Query: 230 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcg 289 ||||||||||||||||| ||||||||||||| |||||||||||| | || ||||||| | Sbjct: 19490469 ctctgggtggactgcgataccgggtacgtgtcgtcgtcctacgcgcgtgtcccgtgcggg 19490528 Query: 290 tccaagctgtgccgcctc 307 ||||||| |||||||||| Sbjct: 19490529 tccaagccgtgccgcctc 19490546 Score = 151 bits (76), Expect = 2e-33 Identities = 169/200 (84%) Strand = Plus / Plus Query: 115 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 174 ||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| ||||| Sbjct: 19487861 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 19487920 Query: 175 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 234 |||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| || Sbjct: 19487921 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 19487980 Query: 235 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtccaa 294 |||||||||||| |||||||||||||| ||||| |||||| |||||||||||| |||||| Sbjct: 19487981 ggtggactgcgaggccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 19488040 Query: 295 gctgtgccgcctcgcgaaga 314 || |||||||||||| |||| Sbjct: 19488041 gcagtgccgcctcgccaaga 19488060 Score = 147 bits (74), Expect = 2e-32 Identities = 152/178 (85%) Strand = Plus / Plus Query: 110 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 169 |||||| ||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 19501736 ccgagctccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatg 19501795 Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 229 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | ||| || | Sbjct: 19501796 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatg 19501855 Query: 230 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcg 287 |||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct: 19501856 ctctgggtggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgtgcggtgcg 19501913 Score = 117 bits (59), Expect = 2e-23 Identities = 170/207 (82%) Strand = Plus / Plus Query: 109 cccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacggg 168 ||||||||||||| ||||||||||| |||||| |||||||| ||||||| ||||| Sbjct: 19494733 cccgagcgccgtgctgctgccggtggacaaggacggcgcaacgcagcagtacgtgacgat 19494792 Query: 169 cttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctc 228 ||| ||||||| ||||| || || |||| ||||||| | ||||| | |||||| Sbjct: 19494793 gttctggcagcggacgccgagtgtgcccgtgaaggccgtggttgacctcgcgggcgccat 19494852 Query: 229 gctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgc 288 |||||||||||||||||| ||||||||| ||| ||||| || ||| |||||||||||| Sbjct: 19494853 gctctgggtggactgcgagtccgggtacgagtcgtcgtcgtatgcgcgcgtgccgtgcgg 19494912 Query: 289 gtccaagctgtgccgcctcgcgaagag 315 |||||||| ||||||||||||||||| Sbjct: 19494913 gtccaagccttgccgcctcgcgaagag 19494939
>dbj|AK122177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148M15, full insert sequence Length = 1741 Score = 147 bits (74), Expect = 2e-32 Identities = 152/178 (85%) Strand = Plus / Plus Query: 110 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 169 |||||| ||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 327 ccgagctccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatg 386 Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 229 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | ||| || | Sbjct: 387 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatg 446 Query: 230 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcg 287 |||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct: 447 ctctgggtggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgtgcggtgcg 504
>dbj|AK070554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061A08, full insert sequence Length = 1474 Score = 129 bits (65), Expect = 6e-27 Identities = 167/200 (83%), Gaps = 2/200 (1%) Strand = Plus / Plus Query: 115 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 174 ||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| ||||| Sbjct: 143 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 202 Query: 175 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 234 |||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| || Sbjct: 203 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 262 Query: 235 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtccaa 294 ||||||||| | |||||||||||||| ||||| |||||| |||||||||||| |||||| Sbjct: 263 ggtggactgag--gccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 320 Query: 295 gctgtgccgcctcgcgaaga 314 || |||||||||||| |||| Sbjct: 321 gcagtgccgcctcgccaaga 340
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 61.9 bits (31), Expect = 1e-06 Identities = 119/148 (80%), Gaps = 9/148 (6%) Strand = Plus / Plus Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgacct---tggaggcgcc 226 |||| |||||||||||| | ||| |||||| ||||||| | ||||| || |||||| Sbjct: 15504957 ttccagcagcgaacgccgcgggtggcggtgaaggccgtggtggacctctcgggcggcgcc 15505016 Query: 227 tcgctctgggtggactgcga------cgccgggtacgtgtcctcgtcctacgcgggcgtg 280 ||||||||||||||||||| ||||||||||| ||| || || ||||| |||||| Sbjct: 15505017 acgctctgggtggactgcgacgccgccgccgggtacgcgtcgtcctcgtacgccggcgtg 15505076 Query: 281 ccgtgcgcgtccaagctgtgccgcctcg 308 || |||| |||||||| |||||||||| Sbjct: 15505077 ccatgcgggtccaagccctgccgcctcg 15505104
>dbj|AP005886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0689B09 Length = 144932 Score = 61.9 bits (31), Expect = 1e-06 Identities = 119/148 (80%), Gaps = 9/148 (6%) Strand = Plus / Plus Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgacct---tggaggcgcc 226 |||| |||||||||||| | ||| |||||| ||||||| | ||||| || |||||| Sbjct: 25812 ttccagcagcgaacgccgcgggtggcggtgaaggccgtggtggacctctcgggcggcgcc 25871 Query: 227 tcgctctgggtggactgcga------cgccgggtacgtgtcctcgtcctacgcgggcgtg 280 ||||||||||||||||||| ||||||||||| ||| || || ||||| |||||| Sbjct: 25872 acgctctgggtggactgcgacgccgccgccgggtacgcgtcgtcctcgtacgccggcgtg 25931 Query: 281 ccgtgcgcgtccaagctgtgccgcctcg 308 || |||| |||||||| |||||||||| Sbjct: 25932 ccatgcgggtccaagccctgccgcctcg 25959
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 61.9 bits (31), Expect = 1e-06 Identities = 119/148 (80%), Gaps = 9/148 (6%) Strand = Plus / Plus Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgacct---tggaggcgcc 226 |||| |||||||||||| | ||| |||||| ||||||| | ||||| || |||||| Sbjct: 154249 ttccagcagcgaacgccgcgggtggcggtgaaggccgtggtggacctctcgggcggcgcc 154308 Query: 227 tcgctctgggtggactgcga------cgccgggtacgtgtcctcgtcctacgcgggcgtg 280 ||||||||||||||||||| ||||||||||| ||| || || ||||| |||||| Sbjct: 154309 acgctctgggtggactgcgacgccgccgccgggtacgcgtcgtcctcgtacgccggcgtg 154368 Query: 281 ccgtgcgcgtccaagctgtgccgcctcg 308 || |||| |||||||| |||||||||| Sbjct: 154369 ccatgcgggtccaagccctgccgcctcg 154396
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 ctctgccagccagccctcagc 31 ||||||||||||||||||||| Sbjct: 2946487 ctctgccagccagccctcagc 2946467
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 110 ccgagcgccgtggtgctgccggtga 134 ||||||||||||||||||| ||||| Sbjct: 1844748 ccgagcgccgtggtgctgctggtga 1844772
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 aggtcccggtgacggccgtg 208 |||||||||||||||||||| Sbjct: 3188471 aggtcccggtgacggccgtg 3188490
>emb|CT009536.7| Mouse DNA sequence from clone RP23-25A7 on chromosome 14, complete sequence Length = 239515 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tctgccagccagccctcagc 31 |||||||||||||||||||| Sbjct: 131523 tctgccagccagccctcagc 131504
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 cgtgctcgtgccgcgcggcc 100 |||||||||||||||||||| Sbjct: 4935908 cgtgctcgtgccgcgcggcc 4935927
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cctacgcgggcgtgccgtgc 286 |||||||||||||||||||| Sbjct: 740360 cctacgcgggcgtgccgtgc 740379
>gb|U18777.1|MAU18777 Mycobacterium avium plasmid pLR7 Rep gene, complete cds Length = 1828 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cctacgcgggcgtgccgtgc 286 |||||||||||||||||||| Sbjct: 288 cctacgcgggcgtgccgtgc 307 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,336,992 Number of Sequences: 3902068 Number of extensions: 1336992 Number of successful extensions: 26266 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25968 Number of HSP's gapped (non-prelim): 292 length of query: 318 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 296 effective length of database: 17,147,199,772 effective search space: 5075571132512 effective search space used: 5075571132512 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
