ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast78f04 |
|---|---|
| Clone Library Name | barley_pub |
>BGLX_SALTY (Q56078) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) (T-cell inhibitor) Length = 765 Score = 63.9 bits (154), Expect = 1e-10 Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 13/151 (8%) Frame = +1 Query: 1 RGFVISDWQGI-DRITSPPGVNYSYSVEAGVGAGIDMIMVPFAYTEFIDDLTYQVKNNII 177 +G +SD I + I + +V + AG+DM M Y++++ L +K+ + Sbjct: 281 KGITVSDHGAIKELIKHGTAADPEDAVRVALKAGVDMSMADEYYSKYLPGL---IKSGKV 337 Query: 178 PMSRINDAVYRILRVKFTMGLFESPYADPSLVGELGKQE------------HRDLAREAV 321 M+ ++DA +L VK+ MGLF PY+ LG +E HR ARE Sbjct: 338 TMAELDDATRHVLNVKYDMGLFNDPYS------HLGPKESDPVDTNAESRLHRKEAREVA 391 Query: 322 RKSLVLLKNGKSASTPLLPLPKKAGKILVAG 414 R+S+VLLKN LPL KK+G I V G Sbjct: 392 RESVVLLKN----RLETLPL-KKSGTIAVVG 417
>BGLX_ECOLI (P33363) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 765 Score = 59.3 bits (142), Expect = 4e-09 Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 13/151 (8%) Frame = +1 Query: 1 RGFVISDWQGI-DRITSPPGVNYSYSVEAGVGAGIDMIMVPFAYTEFIDDLTYQVKNNII 177 +G +SD I + I + +V + +GI+M M Y++++ L +K+ + Sbjct: 281 KGITVSDHGAIKELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGL---IKSGKV 337 Query: 178 PMSRINDAVYRILRVKFTMGLFESPYADPSLVGELGKQE------------HRDLAREAV 321 M+ ++DA +L VK+ MGLF PY+ LG +E HR ARE Sbjct: 338 TMAELDDAARHVLNVKYDMGLFNDPYS------HLGPKESDPVDTNAESRLHRKEAREVA 391 Query: 322 RKSLVLLKNGKSASTPLLPLPKKAGKILVAG 414 R+SLVLLKN LPL KK+ I V G Sbjct: 392 RESLVLLKN----RLETLPL-KKSATIAVVG 417
>BGLX_ERWCH (Q46684) Periplasmic beta-glucosidase/beta-xylosidase precursor| [Includes: Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase); Beta-xylosidase (EC 3.2.1.37) (1,4-beta-D-xylan xylohydrolase) (Xylan 1,4-beta-xylosidase)] Length = 654 Score = 47.8 bits (112), Expect = 1e-05 Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 4/124 (3%) Frame = +1 Query: 28 GIDRITSPPGVNYSYSVEAGV---GAGIDMIMVPFAYTEFIDDLTYQVKNNIIPMSRIND 198 G++++T P + +V AGV G D + L V++ + +R++ Sbjct: 389 GVEKLT--PAERFVKAVNAGVDQFGGVTDSAL-----------LVQAVQDGKLTEARLDT 435 Query: 199 AVYRILRVKFTMGLFESPYADPSLVGEL-GKQEHRDLAREAVRKSLVLLKNGKSASTPLL 375 +V RIL+ KF GLFE PY + + ++ G+ + + LA + +SLVLL+N LL Sbjct: 436 SVNRILKQKFQTGLFERPYVNATQANDIVGRADWQQLADDTQARSLVLLQNNN-----LL 490 Query: 376 PLPK 387 PL K Sbjct: 491 PLRK 494
>BGLB_CLOTM (P14002) Thermostable beta-glucosidase B (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 754 Score = 45.1 bits (105), Expect = 7e-05 Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 1/139 (0%) Frame = +1 Query: 4 GFVISDWQGI-DRITSPPGVNYSYSVEAGVGAGIDMIMVPFAYTEFIDDLTYQVKNNIIP 180 GFV+SDW + DR++ G+ AG+D+ M P ++ + VK+ + Sbjct: 226 GFVVSDWGAVNDRVS-------------GLDAGLDLEM-PTSHGITDKKIVEAVKSGKLS 271 Query: 181 MSRINDAVYRILRVKFTMGLFESPYADPSLVGELGKQEHRDLAREAVRKSLVLLKNGKSA 360 + +N AV RIL+V M L + + + H LAR+A +S+VLLKN Sbjct: 272 ENILNRAVERILKV-IIMAL-----ENKKENAQYEQDAHHRLARQAAAESMVLLKN---- 321 Query: 361 STPLLPLPKKAGKILVAGS 417 +LPL KK+G I + G+ Sbjct: 322 EDDVLPL-KKSGTIALIGA 339
>BGL1_SACFI (P22506) Beta-glucosidase 1 precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 876 Score = 35.8 bits (81), Expect = 0.042 Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 33/171 (19%) Frame = +1 Query: 1 RGFVISDWQGIDRITSPPGVNYSYSVEAGVGAGIDMIMVPFAY------TEFI-DDLTYQ 159 +GFV+SDW G S V + + +G+DM M Y T F +LT Sbjct: 289 QGFVVSDW----------GAQLS-GVYSAI-SGLDMSMPGEVYGGWNTGTSFWGQNLTKA 336 Query: 160 VKNNIIPMSRINDAVYRILRVKFTMGLFES----PYADPSLVGELGKQEHRDLAREAVR- 324 + N +P+ R++D RIL + F + P E G + + D E V+ Sbjct: 337 IYNETVPIERLDDMATRILAALYATNSFPTEDHLPNFSSWTTKEYGNKYYADNTTEIVKV 396 Query: 325 --------------------KSLVLLKNGKSASTPLLPL-PKKAGKILVAG 414 +S+VLLKN + LP+ P+KA ++L++G Sbjct: 397 NYNVDPSNDFTEDTALKVAEESIVLLKNENNT----LPISPEKAKRLLLSG 443
>BGL2_SACFI (P22507) Beta-glucosidase 2 precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 880 Score = 33.5 bits (75), Expect = 0.21 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 29/167 (17%) Frame = +1 Query: 1 RGFVISDWQGIDRITSPPGVNYSYSVEAGVGAGIDMIMV---PFAYTEFIDDLTYQVKNN 171 +GFV+SDW ++ +YS +G+ + ++ + + +LT V N Sbjct: 293 QGFVVSDWAA--------QMSGAYSAISGLDMSMPGELLGGWNTGKSYWGQNLTKAVYNE 344 Query: 172 IIPMSRINDAVYRILRVKFTMGLFESPYADPSL----------------VGELGKQEH-- 297 +P+ R++D RIL + F + P+ + K H Sbjct: 345 TVPIERLDDMATRILAALYATNSFPTKDRLPNFSSFTTKEYGNEFFVDKTSPVVKVNHFV 404 Query: 298 -------RDLAREAVRKSLVLLKNGKSASTPLLPL-PKKAGKILVAG 414 D A + +S+VLLKN K+ LP+ P K K+L++G Sbjct: 405 DPSNDFTEDTALKVAEESIVLLKNEKNT----LPISPNKVRKLLLSG 447
>RIR1_TREPA (O83972) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 845 Score = 30.8 bits (68), Expect = 1.4 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 10/55 (18%) Frame = +1 Query: 1 RGFVISDWQGIDRITSPPGVNYSY----------SVEAGVGAGIDMIMVPFAYTE 135 RG+V DWQ + R + G+ Y S+ AG AG+D IM + E Sbjct: 696 RGYVSEDWQRLQREVATHGMRNGYLLAVAPTSSTSIIAGTTAGVDPIMKQYFLEE 750
>LONH_ARCFU (O29883) Putative protease La homolog type (EC 3.4.21.-)| Length = 621 Score = 30.4 bits (67), Expect = 1.8 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Frame = +1 Query: 76 VEAGVGAGIDMIMVPFAYTEFIDDLT----YQVKNNIIPMSRINDAVYRIL 216 +EA + AG+ +++P + IDD+ ++ K +IP+SRIN+ + +L Sbjct: 553 IEAAIQAGLKKVIIP---KDNIDDVLLDAEHEGKIEVIPVSRINEVLEHVL 600
>YL_DROME (P98163) Putative vitellogenin receptor precursor (Protein yolkless)| (YL) Length = 1984 Score = 30.4 bits (67), Expect = 1.8 Identities = 16/31 (51%), Positives = 16/31 (51%) Frame = -2 Query: 262 GQHRGSQIDPW*TSP*ESCRQHR*FCSWG*C 170 G H SQI PW TS SCR H C G C Sbjct: 1323 GHHNQSQIQPWSTSS-RSCRPHLFDCQDGEC 1352
>CATA_DESVM (Q9ZN99) Catalase (EC 1.11.1.6)| Length = 479 Score = 30.0 bits (66), Expect = 2.3 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -2 Query: 304 DRGVPASRVHQRGLGQHRGSQIDP 233 DRG+PAS H G G H S I P Sbjct: 181 DRGIPASYRHMHGFGSHTFSFISP 204
>RPOC2_PSEAK (Q3ZJ90) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 3462 Score = 29.6 bits (65), Expect = 3.0 Identities = 10/37 (27%), Positives = 23/37 (62%) Frame = +1 Query: 31 IDRITSPPGVNYSYSVEAGVGAGIDMIMVPFAYTEFI 141 +D + + + Y+Y+ +AG+ GID + +P + ++I Sbjct: 79 VDLVENLKSIGYAYATKAGISLGIDDLKIPPSKKDYI 115
>GPMI_CLOPE (Q8XKU2) 2,3-bisphosphoglycerate-independent phosphoglycerate| mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (iPGM) Length = 512 Score = 29.3 bits (64), Expect = 3.9 Identities = 25/90 (27%), Positives = 41/90 (45%) Frame = +1 Query: 151 TYQVKNNIIPMSRINDAVYRILRVKFTMGLFESPYADPSLVGELGKQEHRDLAREAVRKS 330 TY +K + ++ + R+ + K+ M + +A+P +VG G QE A EAV + Sbjct: 364 TYDLKPEMSAYEVTDELINRLDQDKYDMIILN--FANPDMVGHTGVQEAAVKAIEAVDEC 421 Query: 331 LVLLKNGKSASTPLLPLPKKAGKILVAGSH 420 L GK A L +K G + + H Sbjct: 422 L-----GKVADKVL----EKEGTLFITADH 442
>RPOC_WIGBR (Q8D232) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 29.3 bits (64), Expect = 3.9 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +1 Query: 64 YSYSVEAGVGAGIDMIMVPFAYTEFIDDLTYQV 162 +SY+ ++G GID I++P ++ I + Y+V Sbjct: 629 FSYAAKSGSSVGIDDILIPLKKSKIIKNAEYEV 661
>PSTB_METKA (Q8TUR7) Phosphate import ATP-binding protein pstB (EC 3.6.3.27)| (Phosphate-transporting ATPase) (ABC phosphate transporter) Length = 254 Score = 29.3 bits (64), Expect = 3.9 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Frame = +1 Query: 118 PFAYTEFIDDLTYQVKNNIIPMSRINDAVYRILRVKFTMGLFESPYADPSLVGELGKQEH 297 PF + D++ Y ++ + I D VY L + E DP+ G+Q+ Sbjct: 97 PFPWMSIYDNVAYGLRLMGMDEDEIEDRVYEALEKAALLDQVEDRLDDPASALSGGQQQR 156 Query: 298 RDLARE-AVRKSLVLLKNGKSASTPL 372 +AR A+R ++L+ S P+ Sbjct: 157 LCIARALAMRPEVLLMDEPTSDLDPI 182
>LONH1_THEAC (Q9HJ89) Putative protease La homolog type 1 (EC 3.4.21.-)| Length = 657 Score = 29.3 bits (64), Expect = 3.9 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +1 Query: 76 VEAGVGAGIDMIMVP-FAYTEFIDDLTYQVKNNIIPMSRINDAV 204 VEA + AG++ ++VP Y++ I D + K IIP I D + Sbjct: 569 VEAAIEAGLNKVIVPELNYSDIILDADHVNKIEIIPAKTIEDVL 612
>RUVB1_CRYNE (Q5KPZ8) RuvB-like helicase 1 (EC 3.6.1.-)| Length = 484 Score = 28.9 bits (63), Expect = 5.1 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = +1 Query: 232 MGLFESPYADPSLVGELGKQEHRDLAREAVRKSLVLLKNGKSASTPLLPL-PKKAGKILV 408 +GL + A S G +G+ LAREA+ L LLK GK + PLL + P GK + Sbjct: 41 LGLADDGTAMSSSQGFIGQI----LAREALGLHLSLLKGGKYSGRPLLLVGPPGTGKTAL 96 Query: 409 A 411 A Sbjct: 97 A 97
>CYAA_SCHPO (P14605) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 1692 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = -2 Query: 313 HEQDRGVPASRVHQRGLGQHRGSQIDPW 230 + D G+PAS H L HR S PW Sbjct: 215 NSDDDGIPASAAHILDLDYHRDSYDSPW 242
>CATA_CAMJE (Q59296) Catalase (EC 1.11.1.6)| Length = 507 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -2 Query: 307 QDRGVPASRVHQRGLGQHRGSQID 236 +DRG+PAS H G G H S I+ Sbjct: 177 RDRGIPASYRHMHGFGSHTYSFIN 200
>PSBU_SYNPX (Q7U480) Photosystem II 12 kDa extrinsic protein precursor (PS II| complex 12 kDa extrinsic protein) (PSII-U) Length = 135 Score = 28.1 bits (61), Expect = 8.8 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = +1 Query: 247 SPYADPSLVGELGKQEHRDLARE--AVRKSLVLLKNGKSASTPLLP--LPKKAGKILVAG 414 S +AD LVG+ E R++A + A R+ V L N P P AGKI++ G Sbjct: 26 SVHADEDLVGKYSGNEIRNIADDKIAAREGKVDLNNSSVRRFQQFPGMYPTMAGKIVLGG 85 Query: 415 SH 420 + Sbjct: 86 PY 87
>PP220_ASFB7 (Q08358) Polyprotein pp220 (220 kDa polyprotein) [Contains: p34; p14;| p37; p150] Length = 2474 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = +1 Query: 223 KFTMGLFESPYADPSLVGELGKQEHRDLAREAVRK 327 KF L E + DPSL ELGK +++L R+A+ + Sbjct: 1097 KFRKQLSEM-FEDPSLQQELGKVSYQELIRQAINE 1130 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,452,461 Number of Sequences: 219361 Number of extensions: 1394885 Number of successful extensions: 3556 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3491 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3553 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
