ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast78f03 |
|---|---|
| Clone Library Name | barley_pub |
>ARCA_BURPS (Q63U73) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 418 Score = 33.1 bits (74), Expect = 0.16 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Frame = +3 Query: 186 VRAGLRDLPGSRFFESWDDGASAPCAYAGVVCAPDEDDPSGALLR---VPVLTLGT 344 V G D R E WDDG + C GVV D + + LLR V V+T+G+ Sbjct: 341 VETGGNDFAAER--EQWDDGNNMVCIEPGVVVGYDRNTYTNTLLRKAGVEVITIGS 394
>ARCA_BURMA (Q62KD9) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 418 Score = 33.1 bits (74), Expect = 0.16 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Frame = +3 Query: 186 VRAGLRDLPGSRFFESWDDGASAPCAYAGVVCAPDEDDPSGALLR---VPVLTLGT 344 V G D R E WDDG + C GVV D + + LLR V V+T+G+ Sbjct: 341 VETGGNDFAAER--EQWDDGNNMVCIEPGVVVGYDRNTYTNTLLRKAGVEVITIGS 394
>ARCA_BRAJA (Q89DX7) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 420 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%) Frame = +3 Query: 234 WDDGASAPCAYAGVVCAPDEDDPSGALLR---VPVLTL 338 WD GA+ CA GVV A D + + LLR + V+T+ Sbjct: 357 WDSGANLVCASPGVVFAYDRNTYTNTLLRKEGIEVITI 394
>ARCA_RHILO (Q988I1) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 412 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%) Frame = +3 Query: 234 WDDGASAPCAYAGVVCAPDEDDPSGALLR---VPVLTL 338 WD GA+ CA GVV A D + + LLR + V+T+ Sbjct: 349 WDSGANLVCASPGVVYAYDRNTYTNTLLRKEGIEVITI 386
>ARCA_PSEAE (P13981) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 417 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = +3 Query: 228 ESWDDGASAPCAYAGVVCAPDEDDPSGALLR---VPVLTL 338 E WDDG + C GVV D + + LLR V V+T+ Sbjct: 352 EQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITI 391
>ARCA2_RHIME (Q92YG5) Arginine deiminase 2 (EC 3.5.3.6) (ADI 2) (Arginine| dihydrolase 2) (AD 2) Length = 419 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%) Frame = +3 Query: 234 WDDGASAPCAYAGVVCAPDEDDPSGALLR---VPVLTLGTGLSDSPGLAG 374 WD GA+ C GVV A D + + LLR V V+T+ TG G G Sbjct: 356 WDSGANLVCLSPGVVLAYDRNTYTNTLLRKAGVEVITI-TGAELGRGRGG 404
>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)| Length = 2469 Score = 29.3 bits (64), Expect = 2.3 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%) Frame = +3 Query: 237 DDGASAPCAYAGVVCAPDEDDPSGALLRVP------VLTLGTGLSDSPGLAGSVPASLA 395 D + P + + V C D P + LR+P L G + SP LAG+V S+A Sbjct: 740 DPSSWPPGSVSAVTCTHSGDTPKDSTLRIPEDSRKEKLWESPGRATSPPLAGAVSPSVA 798
>HNF3A_HUMAN (P55317) Hepatocyte nuclear factor 3-alpha (HNF-3A) (Forkhead box| protein A1) Length = 473 Score = 28.1 bits (61), Expect = 5.2 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Frame = +3 Query: 240 DGASAPCAYAGVVCAPDEDDPSGAL-------LRVPVLTLGTGLSDSPGLAGSVPAS 389 +GA AP G +P D SGA L+ P + +S PG SVPAS Sbjct: 322 EGAPAP----GPAASPQTLDHSGATATGGASELKTPASSTAPPISSGPGALASVPAS 374
>ARCA_PSEPU (P41142) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 420 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Frame = +3 Query: 228 ESWDDGASAPCAYAGVVCAPDEDDPSGALLR---VPVLTLGTG 347 E WDDG + GVV D + + LLR + V+T+ G Sbjct: 355 EQWDDGNNVVALEPGVVIGYDRNTYTNTLLRKAGIEVITISAG 397
>ARCA_STAEQ (Q5HKU2) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 411 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 228 ESWDDGASAPCAYAGVVCAPDEDDPSGALLR 320 E W+DG++ C GVV D + S LLR Sbjct: 348 EQWNDGSNTLCIRPGVVVTYDRNYVSNQLLR 378
>ARCA2_STAES (Q8CMW1) Arginine deiminase 2 (EC 3.5.3.6) (ADI 2) (Arginine| dihydrolase 2) (AD 2) Length = 411 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 228 ESWDDGASAPCAYAGVVCAPDEDDPSGALLR 320 E W+DG++ C GVV D + S LLR Sbjct: 348 EQWNDGSNTLCIRPGVVVTYDRNYVSNQLLR 378
>ARCA1_STAES (Q8CQG5) Arginine deiminase 1 (EC 3.5.3.6) (ADI 1) (Arginine| dihydrolase 1) (AD 1) Length = 411 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 228 ESWDDGASAPCAYAGVVCAPDEDDPSGALLR 320 E W+DG++ C GVV D + S LLR Sbjct: 348 EQWNDGSNTLCIRPGVVVTYDRNYVSNQLLR 378
>ARCA_PSEPK (Q88P52) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 417 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Frame = +3 Query: 228 ESWDDGASAPCAYAGVVCAPDEDDPSGALLR---VPVLTLGTG 347 E WDDG + GVV D + + LLR + V+T+ G Sbjct: 352 EQWDDGNNVVAIEPGVVIGYDRNTYTNTLLRKAGIEVITISAG 394
>CASQ1_CHICK (P19204) Calsequestrin-1 precursor (Calsequestrin, skeletal muscle| isoform) (Aspartactin) (Laminin-binding protein) Length = 406 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/61 (29%), Positives = 27/61 (44%) Frame = +3 Query: 189 RAGLRDLPGSRFFESWDDGASAPCAYAGVVCAPDEDDPSGALLRVPVLTLGTGLSDSPGL 368 RA LR L FE+W+D +V +EDDP G + + +D+P L Sbjct: 246 RATLRKLRPEDMFETWEDDMEG----IHIVAFAEEDDPDGFEFLEILKQVARDNTDNPDL 301 Query: 369 A 371 + Sbjct: 302 S 302
>ARCA_STAAW (Q8NUK7) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 411 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 228 ESWDDGASAPCAYAGVVCAPDEDDPSGALLR 320 E W+DG++ C GVV D + S LLR Sbjct: 348 EQWNDGSNTLCIRPGVVVTYDRNYVSNDLLR 378
>ARCA_STAAS (Q6G639) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 411 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 228 ESWDDGASAPCAYAGVVCAPDEDDPSGALLR 320 E W+DG++ C GVV D + S LLR Sbjct: 348 EQWNDGSNTLCIRPGVVVTYDRNYVSNDLLR 378
>ARCA_STAAR (Q6GDG7) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 411 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 228 ESWDDGASAPCAYAGVVCAPDEDDPSGALLR 320 E W+DG++ C GVV D + S LLR Sbjct: 348 EQWNDGSNTLCIRPGVVVTYDRNYVSNDLLR 378
>ARCA_STAAN (P63554) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 411 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 228 ESWDDGASAPCAYAGVVCAPDEDDPSGALLR 320 E W+DG++ C GVV D + S LLR Sbjct: 348 EQWNDGSNTLCIRPGVVVTYDRNYVSNDLLR 378
>ARCA_STAAM (P63553) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 411 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 228 ESWDDGASAPCAYAGVVCAPDEDDPSGALLR 320 E W+DG++ C GVV D + S LLR Sbjct: 348 EQWNDGSNTLCIRPGVVVTYDRNYVSNDLLR 378
>ARCA_STAAC (Q5HCR2) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 411 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 228 ESWDDGASAPCAYAGVVCAPDEDDPSGALLR 320 E W+DG++ C GVV D + S LLR Sbjct: 348 EQWNDGSNTLCIRPGVVVTYDRNYVSNDLLR 378
>NOV_HUMAN (P48745) Protein NOV homolog precursor (NovH) (Nephroblastoma| overexpressed gene protein homolog) Length = 357 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%) Frame = +3 Query: 276 VCAPDEDDPSGALLRV---PVLTLGTGLSDS 359 +C PDE+D G L P TLG +SDS Sbjct: 172 ICGPDEEDSLGGLTLAAYRPEATLGVEVSDS 202
>IRS1_HUMAN (P35568) Insulin receptor substrate 1 (IRS-1)| Length = 1242 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/23 (60%), Positives = 14/23 (60%) Frame = +3 Query: 333 TLGTGLSDSPGLAGSVPASLASL 401 T GTGL SP LAG AS A L Sbjct: 495 TPGTGLGTSPALAGDEAASAADL 517
>ARCA_RHIET (O31017) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 409 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = +3 Query: 228 ESWDDGASAPCAYAGVVCAPDEDDPSGALLR---VPVLTL 338 E WDDG + GVV A D + + LLR + V+T+ Sbjct: 345 EQWDDGNNVVALEPGVVVAYDRNTYTNTLLRKAGIEVITI 384
>ARCA1_RHIME (Q92ZT2) Arginine deiminase 1 (EC 3.5.3.6) (ADI 1) (Arginine| dihydrolase 1) (AD 1) Length = 409 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = +3 Query: 228 ESWDDGASAPCAYAGVVCAPDEDDPSGALLR---VPVLTL 338 E WDDG + GVV A D + + LLR + V+T+ Sbjct: 345 EQWDDGNNVVALEPGVVVAYDRNTYTNTLLRKAGIEVITI 384 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.118 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,853,951 Number of Sequences: 219361 Number of extensions: 287816 Number of successful extensions: 1163 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1132 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1163 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
