ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast78f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
2dbj|AP003512.3| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
3dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
4dbj|AK105019.2| Oryza sativa (japonica cultivar-group) cDNA clon... 155 1e-34
5dbj|AK064086.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 1e-34
6emb|X69524.1|MSCABC1 M.squamata cabc1 mRNA for chlorophyll a/b/c... 46 0.089
7emb|X73540.1|MSLHC13 M.squamata Lhc1*3 mRNA for chlorophyll a/b/... 46 0.089
8emb|X73539.1|MSLHC14 M.squamata Lhc1*4 mRNA for chlorophyll a/b/... 46 0.089
9gb|AE015924.1| Porphyromonas gingivalis W83, complete genome 44 0.35
10ref|XM_469872.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
11gb|AY508646.1| Encephalitozoon hellem from Agapornis roseicollis... 42 1.4
12gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 42 1.4
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.4
14gb|AC090713.6| Oryza sativa chromosome 3 BAC OSJNBa0002J24 genom... 42 1.4
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
16dbj|AK110306.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
17dbj|AK063359.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
18ref|XM_524082.1| PREDICTED: Pan troglodytes XPA binding protein ... 40 5.5
19gb|AC116498.15| Mus musculus chromosome 15, clone RP24-294J7, co... 40 5.5
20gb|AC124637.10| Mus musculus chromosome 15, clone RP23-458B6, co... 40 5.5
21gb|DQ195081.1| Oryza sativa (indica cultivar-group) putative leu... 40 5.5
22ref|XM_593432.2| PREDICTED: Bos taurus hypothetical LOC515411 (L... 40 5.5
23gb|BC021341.1| Mus musculus XPA binding protein 2, mRNA (cDNA cl... 40 5.5
24ref|NM_026156.1| Mus musculus XPA binding protein 2 (Xab2), mRNA 40 5.5
25gb|AY756174.4| Oryza rufipogon putative leucine-rich repeat rece... 40 5.5
26gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
27gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 5.5
28gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 40 5.5
29dbj|AK132434.1| Mus musculus 0 day neonate skin cDNA, RIKEN full... 40 5.5
30dbj|AK145925.1| Mus musculus 12 days pregnant adult female place... 40 5.5
31gb|AY395259.1| Hyalomma anatolicum excavatum calreticulin gene, ... 40 5.5
32dbj|AK087952.1| Mus musculus 2 days neonate thymus thymic cells ... 40 5.5
33dbj|AK002890.1| Mus musculus adult male kidney cDNA, RIKEN full-... 40 5.5
34dbj|AK008628.1| Mus musculus adult male stomach cDNA, RIKEN full... 40 5.5
35dbj|AK031533.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 5.5
36dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
37dbj|AK216345.1| Mus musculus cDNA, clone:Y2G0138A19, strand:minu... 40 5.5
38dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
39dbj|AP007224.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
40emb|AJ242873.1|HVU242873 Hordeum vulgare mRNA for vacuolar H+-AT... 40 5.5
41dbj|AK073007.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
42gb|AC170806.2| Mus musculus BAC clone RP24-363P6 from chromosome... 40 5.5
43gb|M89911.1|STMRPLL Streptomyces antibioticus ribosomal proteins... 40 5.5
44gb|M77841.1|STMHUTH Streptomyces griseus histidine ammonia-lyase... 40 5.5 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  155 bits (78), Expect = 1e-34
 Identities = 180/212 (84%), Gaps = 9/212 (4%)
 Strand = Plus / Plus

                                                                            
Query: 198      ctgcgggacctgccggggtcgcgcttcttcgagtcctgggacgacggcgcgtccgccccg 257
                |||||||||||||||||||| || |||||||| |||||||| |||| | |   || ||||
Sbjct: 15980347 ctgcgggacctgccggggtcccggttcttcgaatcctgggatgacgccac---cgacccg 15980403

                                                                            
Query: 258      tgcgcctacgccggcgtcgtgtgcgcgcccgacgaggacgacccctccggcgcgctcctc 317
                |||| ||| |||||||||||||||| ||||||||||||||||||  |||   ||||||  
Sbjct: 15980404 tgcgactatgccggcgtcgtgtgcgagcccgacgaggacgacccggccg---cgctcc-- 15980458

                                                                            
Query: 318      cgcgtgccggtgctcacgctcggcaccggcctctccgactcccccggcctggccggcagc 377
                 ||||| | ||||| |||||||||||||||||| ||||||| ||||||||||| ||||  
Sbjct: 15980459 -gcgtgtccgtgctgacgctcggcaccggcctcaccgactctcccggcctggctggcacg 15980517

                                                
Query: 378      gtcccggcctcgctcgccagcctcaccgcgct 409
                 ||||||||||||| ||||||||||| |||||
Sbjct: 15980518 ctcccggcctcgcttgccagcctcactgcgct 15980549



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 44       gcttgtccgcttcgcagcggccgaggcggcgcacatggcg 83
                |||||||| |||||| | |||||||| | |||||||||||
Sbjct: 15980181 gcttgtcctcttcgccgaggccgaggtgacgcacatggcg 15980220



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 250     ccgccccgtgcgcctacgccggcgtcgtgtgcgcgc 285
               |||||| ||||||| |||||||||||| || |||||
Sbjct: 7720986 ccgccctgtgcgccgacgccggcgtcgagtccgcgc 7721021
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>dbj|AP003512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0618D11
          Length = 150103

 Score =  155 bits (78), Expect = 1e-34
 Identities = 180/212 (84%), Gaps = 9/212 (4%)
 Strand = Plus / Plus

                                                                        
Query: 198  ctgcgggacctgccggggtcgcgcttcttcgagtcctgggacgacggcgcgtccgccccg 257
            |||||||||||||||||||| || |||||||| |||||||| |||| | |   || ||||
Sbjct: 9076 ctgcgggacctgccggggtcccggttcttcgaatcctgggatgacgccac---cgacccg 9132

                                                                        
Query: 258  tgcgcctacgccggcgtcgtgtgcgcgcccgacgaggacgacccctccggcgcgctcctc 317
            |||| ||| |||||||||||||||| ||||||||||||||||||  |||   ||||||  
Sbjct: 9133 tgcgactatgccggcgtcgtgtgcgagcccgacgaggacgacccggccg---cgctcc-- 9187

                                                                        
Query: 318  cgcgtgccggtgctcacgctcggcaccggcctctccgactcccccggcctggccggcagc 377
             ||||| | ||||| |||||||||||||||||| ||||||| ||||||||||| ||||  
Sbjct: 9188 -gcgtgtccgtgctgacgctcggcaccggcctcaccgactctcccggcctggctggcacg 9246

                                            
Query: 378  gtcccggcctcgctcgccagcctcaccgcgct 409
             ||||||||||||| ||||||||||| |||||
Sbjct: 9247 ctcccggcctcgcttgccagcctcactgcgct 9278



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 44   gcttgtccgcttcgcagcggccgaggcggcgcacatggcg 83
            |||||||| |||||| | |||||||| | |||||||||||
Sbjct: 8910 gcttgtcctcttcgccgaggccgaggtgacgcacatggcg 8949
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>dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0031P18
          Length = 156535

 Score =  155 bits (78), Expect = 1e-34
 Identities = 180/212 (84%), Gaps = 9/212 (4%)
 Strand = Plus / Plus

                                                                          
Query: 198    ctgcgggacctgccggggtcgcgcttcttcgagtcctgggacgacggcgcgtccgccccg 257
              |||||||||||||||||||| || |||||||| |||||||| |||| | |   || ||||
Sbjct: 113796 ctgcgggacctgccggggtcccggttcttcgaatcctgggatgacgccac---cgacccg 113852

                                                                          
Query: 258    tgcgcctacgccggcgtcgtgtgcgcgcccgacgaggacgacccctccggcgcgctcctc 317
              |||| ||| |||||||||||||||| ||||||||||||||||||  |||   ||||||  
Sbjct: 113853 tgcgactatgccggcgtcgtgtgcgagcccgacgaggacgacccggccg---cgctcc-- 113907

                                                                          
Query: 318    cgcgtgccggtgctcacgctcggcaccggcctctccgactcccccggcctggccggcagc 377
               ||||| | ||||| |||||||||||||||||| ||||||| ||||||||||| ||||  
Sbjct: 113908 -gcgtgtccgtgctgacgctcggcaccggcctcaccgactctcccggcctggctggcacg 113966

                                              
Query: 378    gtcccggcctcgctcgccagcctcaccgcgct 409
               ||||||||||||| ||||||||||| |||||
Sbjct: 113967 ctcccggcctcgcttgccagcctcactgcgct 113998



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 44     gcttgtccgcttcgcagcggccgaggcggcgcacatggcg 83
              |||||||| |||||| | |||||||| | |||||||||||
Sbjct: 113630 gcttgtcctcttcgccgaggccgaggtgacgcacatggcg 113669
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>dbj|AK105019.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-F01, full
           insert sequence
          Length = 1755

 Score =  155 bits (78), Expect = 1e-34
 Identities = 180/212 (84%), Gaps = 9/212 (4%)
 Strand = Plus / Plus

                                                                       
Query: 198 ctgcgggacctgccggggtcgcgcttcttcgagtcctgggacgacggcgcgtccgccccg 257
           |||||||||||||||||||| || |||||||| |||||||| |||| | |   || ||||
Sbjct: 320 ctgcgggacctgccggggtcccggttcttcgaatcctgggatgacgccac---cgacccg 376

                                                                       
Query: 258 tgcgcctacgccggcgtcgtgtgcgcgcccgacgaggacgacccctccggcgcgctcctc 317
           |||| ||| |||||||||||||||| ||||||||||||||||||  |||   ||||||  
Sbjct: 377 tgcgactatgccggcgtcgtgtgcgagcccgacgaggacgacccggccg---cgctcc-- 431

                                                                       
Query: 318 cgcgtgccggtgctcacgctcggcaccggcctctccgactcccccggcctggccggcagc 377
            ||||| | ||||| |||||||||||||||||| ||||||| ||||||||||| ||||  
Sbjct: 432 -gcgtgtccgtgctgacgctcggcaccggcctcaccgactctcccggcctggctggcacg 490

                                           
Query: 378 gtcccggcctcgctcgccagcctcaccgcgct 409
            ||||||||||||| ||||||||||| |||||
Sbjct: 491 ctcccggcctcgcttgccagcctcactgcgct 522



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 44  gcttgtccgcttcgcagcggccgaggcggcgcacatggcg 83
           |||||||| |||||| | |||||||| | |||||||||||
Sbjct: 154 gcttgtcctcttcgccgaggccgaggtgacgcacatggcg 193
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>dbj|AK064086.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B12, full
           insert sequence
          Length = 1750

 Score =  155 bits (78), Expect = 1e-34
 Identities = 180/212 (84%), Gaps = 9/212 (4%)
 Strand = Plus / Plus

                                                                       
Query: 198 ctgcgggacctgccggggtcgcgcttcttcgagtcctgggacgacggcgcgtccgccccg 257
           |||||||||||||||||||| || |||||||| |||||||| |||| | |   || ||||
Sbjct: 182 ctgcgggacctgccggggtcccggttcttcgaatcctgggatgacgccac---cgacccg 238

                                                                       
Query: 258 tgcgcctacgccggcgtcgtgtgcgcgcccgacgaggacgacccctccggcgcgctcctc 317
           |||| ||| |||||||||||||||| ||||||||||||||||||  |||   ||||||  
Sbjct: 239 tgcgactatgccggcgtcgtgtgcgagcccgacgaggacgacccggccg---cgctcc-- 293

                                                                       
Query: 318 cgcgtgccggtgctcacgctcggcaccggcctctccgactcccccggcctggccggcagc 377
            ||||| | ||||| |||||||||||||||||| ||||||| ||||||||||| ||||  
Sbjct: 294 -gcgtgtccgtgctgacgctcggcaccggcctcaccgactctcccggcctggctggcacg 352

                                           
Query: 378 gtcccggcctcgctcgccagcctcaccgcgct 409
            ||||||||||||| ||||||||||| |||||
Sbjct: 353 ctcccggcctcgcttgccagcctcactgcgct 384



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                  
Query: 44 gcttgtccgcttcgcagcggccgaggcggcgcacatggcg 83
          |||||||| |||||| | |||||||| | |||||||||||
Sbjct: 16 gcttgtcctcttcgccgaggccgaggtgacgcacatggcg 55
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>emb|X69524.1|MSCABC1 M.squamata cabc1 mRNA for chlorophyll a/b/c binding protein
           precursor
          Length = 882

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 340 gcaccggcctctccgactccccc 362
           |||||||||||||||||||||||
Sbjct: 486 gcaccggcctctccgactccccc 508
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>emb|X73540.1|MSLHC13 M.squamata Lhc1*3 mRNA for chlorophyll a/b/c binding precursor
          Length = 829

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 340 gcaccggcctctccgactccccc 362
           |||||||||||||||||||||||
Sbjct: 405 gcaccggcctctccgactccccc 427
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>emb|X73539.1|MSLHC14 M.squamata Lhc1*4 mRNA for chlorophyll a/b/c binding precursor
          Length = 903

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 340 gcaccggcctctccgactccccc 362
           |||||||||||||||||||||||
Sbjct: 443 gcaccggcctctccgactccccc 465
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>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome
          Length = 2343476

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 104     catcctcgcccagctgctctgc 125
               ||||||||||||||||||||||
Sbjct: 2126290 catcctcgcccagctgctctgc 2126269
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>ref|XM_469872.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 477

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 60  gcggccgaggcggcgcacatggcgg 84
           ||||| |||||||||||||||||||
Sbjct: 139 gcggcggaggcggcgcacatggcgg 163
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>gb|AY508646.1| Encephalitozoon hellem from Agapornis roseicollis zinc-dependent
            aminopeptidase mRNA, complete cds
          Length = 2640

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 30   cagcctcagaactcgcttgtc 50
            |||||||||||||||||||||
Sbjct: 1932 cagcctcagaactcgcttgtc 1912
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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 195   ggcctgcgggacctgccgggg 215
             |||||||||||||||||||||
Sbjct: 84213 ggcctgcgggacctgccgggg 84193
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 60       gcggccgaggcggcgcacatggcgg 84
                ||||| |||||||||||||||||||
Sbjct: 31244659 gcggcggaggcggcgcacatggcgg 31244683



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 377      cgtcccggcctcgctcgcca 396
                ||||||||||||||||||||
Sbjct: 10410142 cgtcccggcctcgctcgcca 10410161
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>gb|AC090713.6| Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete
             sequence
          Length = 146022

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 60    gcggccgaggcggcgcacatggcgg 84
             ||||| |||||||||||||||||||
Sbjct: 51900 gcggcggaggcggcgcacatggcgg 51924
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 60       gcggccgaggcggcgcacatggcgg 84
                ||||| |||||||||||||||||||
Sbjct: 31335175 gcggcggaggcggcgcacatggcgg 31335199



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 377      cgtcccggcctcgctcgcca 396
                ||||||||||||||||||||
Sbjct: 10408243 cgtcccggcctcgctcgcca 10408262
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>dbj|AK110306.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-164-A11, full
           insert sequence
          Length = 2760

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 55  tcgcagcggccgaggcggcgc 75
           |||||||||||||||||||||
Sbjct: 196 tcgcagcggccgaggcggcgc 216
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>dbj|AK063359.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-C10, full
           insert sequence
          Length = 529

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 60  gcggccgaggcggcgcacatggcgg 84
           ||||| |||||||||||||||||||
Sbjct: 171 gcggcggaggcggcgcacatggcgg 147
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>ref|XM_524082.1| PREDICTED: Pan troglodytes XPA binding protein 2 (LOC468695), mRNA
          Length = 3240

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  tcctcatcctcgcccagctg 119
            ||||||||||||||||||||
Sbjct: 3101 tcctcatcctcgcccagctg 3082
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>gb|AC116498.15| Mus musculus chromosome 15, clone RP24-294J7, complete sequence
          Length = 183865

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    cccagctgctctgcatcctg 131
              ||||||||||||||||||||
Sbjct: 121447 cccagctgctctgcatcctg 121466
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>gb|AC124637.10| Mus musculus chromosome 15, clone RP23-458B6, complete sequence
          Length = 200607

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    cccagctgctctgcatcctg 131
              ||||||||||||||||||||
Sbjct: 176496 cccagctgctctgcatcctg 176515
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>gb|DQ195081.1| Oryza sativa (indica cultivar-group) putative leucine-rich repeat
             receptor-like kinase gene cluster, complete sequence;
             ternary complex factor MIP1-like gene, complete cds;
             putative membrane-associated protein and gag-pol
             precursor, pseudogenes, complete sequence; and unknown
             genes
          Length = 94077

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   cgacccctccggcgcgctcc 315
             ||||||||||||||||||||
Sbjct: 72989 cgacccctccggcgcgctcc 72970
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>ref|XM_593432.2| PREDICTED: Bos taurus hypothetical LOC515411 (LOC515411), mRNA
          Length = 1764

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 368 ggccggcagcgtcccggcctcgct 391
           ||||||| ||||||||||||||||
Sbjct: 196 ggccggctgcgtcccggcctcgct 173
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>gb|BC021341.1| Mus musculus XPA binding protein 2, mRNA (cDNA clone MGC:29394
            IMAGE:5066146), complete cds
          Length = 2705

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  tcctcatcctcgcccagctg 119
            ||||||||||||||||||||
Sbjct: 2493 tcctcatcctcgcccagctg 2474
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>ref|NM_026156.1| Mus musculus XPA binding protein 2 (Xab2), mRNA
          Length = 2655

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  tcctcatcctcgcccagctg 119
            ||||||||||||||||||||
Sbjct: 2496 tcctcatcctcgcccagctg 2477
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>gb|AY756174.4| Oryza rufipogon putative leucine-rich repeat receptor-like kinases and
             ternary complex factor MIP1-like genes, complete cds;
             retrotransposon putative membrane-associated protein and
             gag-pol precursor, pseudogenes, complete sequence; and
             unknown genes
          Length = 102522

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   cgacccctccggcgcgctcc 315
             ||||||||||||||||||||
Sbjct: 81408 cgacccctccggcgcgctcc 81389
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>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   cgtcccggcctcgctcgcca 396
             ||||||||||||||||||||
Sbjct: 66695 cgtcccggcctcgctcgcca 66714
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 374     cagcgtcccggcctcgctcgccag 397
               |||||||||||||||| |||||||
Sbjct: 4832824 cagcgtcccggcctcggtcgccag 4832847
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>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03,
              from chromosome 3, complete sequence
          Length = 125800

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 377    cgtcccggcctcgctcgcca 396
              ||||||||||||||||||||
Sbjct: 123608 cgtcccggcctcgctcgcca 123627
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>dbj|AK132434.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
            library, clone:4632427H03 product:XPA binding protein 2,
            full insert sequence
          Length = 2668

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  tcctcatcctcgcccagctg 119
            ||||||||||||||||||||
Sbjct: 2509 tcctcatcctcgcccagctg 2490
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>dbj|AK145925.1| Mus musculus 12 days pregnant adult female placenta cDNA, RIKEN
            full-length enriched library, clone:I530016B15
            product:XPA binding protein 2, full insert sequence
          Length = 2656

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  tcctcatcctcgcccagctg 119
            ||||||||||||||||||||
Sbjct: 2497 tcctcatcctcgcccagctg 2478
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>gb|AY395259.1| Hyalomma anatolicum excavatum calreticulin gene, complete cds
          Length = 1400

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 281  cgcgcccgacgaggacgacc 300
            ||||||||||||||||||||
Sbjct: 1361 cgcgcccgacgaggacgacc 1380
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>dbj|AK087952.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430001G13
            product:ADAPTER PROTEIN ATH-55 homolog [Rattus
            norvegicus], full insert sequence
          Length = 2917

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  tcctcatcctcgcccagctg 119
            ||||||||||||||||||||
Sbjct: 2758 tcctcatcctcgcccagctg 2739
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>dbj|AK002890.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:0610041O14 product:ADAPTER PROTEIN ATH-55
            homolog [Rattus norvegicus], full insert sequence
          Length = 2655

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  tcctcatcctcgcccagctg 119
            ||||||||||||||||||||
Sbjct: 2496 tcctcatcctcgcccagctg 2477
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>dbj|AK008628.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched
           library, clone:2200003A22 product:RIKEN cDNA 0610041O14
           gene, full insert sequence
          Length = 559

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 100 tcctcatcctcgcccagctg 119
           ||||||||||||||||||||
Sbjct: 397 tcctcatcctcgcccagctg 378
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>dbj|AK031533.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030448F03 product:ADAPTER
            PROTEIN ATH-55 homolog [Rattus norvegicus], full insert
            sequence
          Length = 4408

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  tcctcatcctcgcccagctg 119
            ||||||||||||||||||||
Sbjct: 2582 tcctcatcctcgcccagctg 2563
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 296     cgacccctccggcgcgctcc 315
               ||||||||||||||||||||
Sbjct: 2903170 cgacccctccggcgcgctcc 2903189
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>dbj|AK216345.1| Mus musculus cDNA, clone:Y2G0138A19, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000019614, based on BLAT search
          Length = 302

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 100 tcctcatcctcgcccagctg 119
           ||||||||||||||||||||
Sbjct: 130 tcctcatcctcgcccagctg 111
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>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0091G06
          Length = 161851

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 250   ccgccccgtgcgcctacgccggcgtcgtgtgcgcgc 285
             |||||| ||||||| |||||||||||| || |||||
Sbjct: 33484 ccgccctgtgcgccgacgccggcgtcgagtccgcgc 33519
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>dbj|AP007224.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0463E12
          Length = 161081

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   cgacccctccggcgcgctcc 315
             ||||||||||||||||||||
Sbjct: 28809 cgacccctccggcgcgctcc 28828
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>emb|AJ242873.1|HVU242873 Hordeum vulgare mRNA for vacuolar H+-ATPase subunit C
          Length = 1487

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 296 cgacccctccggcgcgctcc 315
           ||||||||||||||||||||
Sbjct: 316 cgacccctccggcgcgctcc 297
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>dbj|AK073007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143M19, full
           insert sequence
          Length = 1475

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 296 cgacccctccggcgcgctcc 315
           ||||||||||||||||||||
Sbjct: 477 cgacccctccggcgcgctcc 458
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>gb|AC170806.2| Mus musculus BAC clone RP24-363P6 from chromosome 8, complete sequence
          Length = 182564

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    tcctcatcctcgcccagctg 119
              ||||||||||||||||||||
Sbjct: 136781 tcctcatcctcgcccagctg 136800
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>gb|M89911.1|STMRPLL Streptomyces antibioticus ribosomal proteins L7 and L12 (rplL)
           gene, complete cds and ribosomal protein L10 (rplJ)
           gene, complete cds
          Length = 1451

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 248 gtccgccccgtgcgcctacgccgg 271
           ||||||||||||||||| ||||||
Sbjct: 88  gtccgccccgtgcgcctgcgccgg 111
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>gb|M77841.1|STMHUTH Streptomyces griseus histidine ammonia-lyase (hutH) gene, complete
            cds; ORF, partial cds
          Length = 2946

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 294  gacgacccctccggcgcgctcctc 317
            |||||| |||||||||||||||||
Sbjct: 2607 gacgacgcctccggcgcgctcctc 2584


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,866,768
Number of Sequences: 3902068
Number of extensions: 1866768
Number of successful extensions: 39870
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39518
Number of HSP's gapped (non-prelim): 347
length of query: 409
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 387
effective length of database: 17,147,199,772
effective search space: 6635966311764
effective search space used: 6635966311764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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