ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast78f01 |
|---|---|
| Clone Library Name | barley_pub |
>PSB5B_ARATH (Q9LIP2) Proteasome subunit beta type 5-B precursor (EC 3.4.25.1)| (20S proteasome beta subunit E-2) (Proteasome epsilon-2 chain) Length = 273 Score = 80.5 bits (197), Expect = 9e-16 Identities = 40/65 (61%), Positives = 48/65 (73%) Frame = +1 Query: 196 ALEFPTCDDFDGFQKATKAMVNNKKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKS 375 + + P DFDGFQK MV KGTTTL+FIF +GV+VAADSRASMGGYISSQ+V+K Sbjct: 32 SFDLPRTTDFDGFQKKAVEMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKI 91 Query: 376 SRLIP 390 + P Sbjct: 92 IEINP 96 Score = 30.8 bits (68), Expect = 0.80 Identities = 13/14 (92%), Positives = 14/14 (100%) Frame = +3 Query: 366 EKIIEINPYMLGTM 407 +KIIEINPYMLGTM Sbjct: 89 KKIIEINPYMLGTM 102
>PSB5A_ARATH (O23717) Proteasome subunit beta type 5-A precursor (EC 3.4.25.1)| (20S proteasome beta subunit E-1) (Proteasome epsilon-1 chain) (Proteasome component E) Length = 274 Score = 80.1 bits (196), Expect = 1e-15 Identities = 39/65 (60%), Positives = 49/65 (75%) Frame = +1 Query: 196 ALEFPTCDDFDGFQKATKAMVNNKKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKS 375 + + P +FDGFQK K M+ + KGTTTL+FIF GV+VAADSRASMGGYISSQ+V+K Sbjct: 32 SFDLPRTKEFDGFQKKAKDMLKHAKGTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKI 91 Query: 376 SRLIP 390 + P Sbjct: 92 IEINP 96 Score = 30.8 bits (68), Expect = 0.80 Identities = 13/14 (92%), Positives = 14/14 (100%) Frame = +3 Query: 366 EKIIEINPYMLGTM 407 +KIIEINPYMLGTM Sbjct: 89 KKIIEINPYMLGTM 102
>PSB5_SPIOL (O24361) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (20S proteasome subunit E) (Proteasome epsilon chain) Length = 272 Score = 79.3 bits (194), Expect = 2e-15 Identities = 40/65 (61%), Positives = 47/65 (72%) Frame = +1 Query: 196 ALEFPTCDDFDGFQKATKAMVNNKKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKS 375 + + P DFDGFQK MV KGTTTL+FIF GV+VAADSRASMGGYISSQ+V+K Sbjct: 30 SFDLPNPTDFDGFQKEAVQMVKPAKGTTTLAFIFKHGVMVAADSRASMGGYISSQSVKKI 89 Query: 376 SRLIP 390 + P Sbjct: 90 IEINP 94 Score = 30.8 bits (68), Expect = 0.80 Identities = 13/14 (92%), Positives = 14/14 (100%) Frame = +3 Query: 366 EKIIEINPYMLGTM 407 +KIIEINPYMLGTM Sbjct: 87 KKIIEINPYMLGTM 100
>PSB5_RAT (P28075) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome epsilon chain) (Macropain epsilon chain) (Multicatalytic endopeptidase complex epsilon chain) (Proteasome subunit X) (Proteasome chain 6) Length = 208 Score = 51.6 bits (122), Expect = 4e-07 Identities = 26/40 (65%), Positives = 31/40 (77%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIP 390 GTTTL+F F GVIVAADSRA+ G YI+SQTV+K + P Sbjct: 4 GTTTLAFKFQHGVIVAADSRATAGPYIASQTVKKVIEINP 43 Score = 29.3 bits (64), Expect = 2.3 Identities = 11/14 (78%), Positives = 14/14 (100%) Frame = +3 Query: 366 EKIIEINPYMLGTM 407 +K+IEINPY+LGTM Sbjct: 36 KKVIEINPYLLGTM 49
>PSB5_HUMAN (P28074) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome epsilon chain) (Macropain epsilon chain) (Multicatalytic endopeptidase complex epsilon chain) (Proteasome subunit X) (Proteasome chain 6) (Proteasome subunit MB1) Length = 208 Score = 51.6 bits (122), Expect = 4e-07 Identities = 26/40 (65%), Positives = 31/40 (77%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIP 390 GTTTL+F F GVIVAADSRA+ G YI+SQTV+K + P Sbjct: 4 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINP 43 Score = 29.3 bits (64), Expect = 2.3 Identities = 11/14 (78%), Positives = 14/14 (100%) Frame = +3 Query: 366 EKIIEINPYMLGTM 407 +K+IEINPY+LGTM Sbjct: 36 KKVIEINPYLLGTM 49
>PSB5_MOUSE (O55234) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome epsilon chain) (Macropain epsilon chain) (Multicatalytic endopeptidase complex epsilon chain) (Proteasome subunit X) (Proteasome chain 6) Length = 209 Score = 50.8 bits (120), Expect = 7e-07 Identities = 26/40 (65%), Positives = 31/40 (77%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIP 390 GTTTL+F F GVIVAADSRA+ G YI+SQTV+K + P Sbjct: 4 GTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINP 43 Score = 29.3 bits (64), Expect = 2.3 Identities = 11/14 (78%), Positives = 14/14 (100%) Frame = +3 Query: 366 EKIIEINPYMLGTM 407 +K+IEINPY+LGTM Sbjct: 36 KKVIEINPYLLGTM 49
>PSB5_CHICK (P34065) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome chain 1) (Macropain chain 1) (Multicatalytic endopeptidase complex chain 1) (Proteasome subunit C1) (Fragment) Length = 256 Score = 49.7 bits (117), Expect = 2e-06 Identities = 24/41 (58%), Positives = 31/41 (75%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIPT 393 GTTTL+F F GV+VA DSRA+ G YI+SQTV+K + P+ Sbjct: 55 GTTTLAFKFAHGVVVAVDSRATAGSYIASQTVQKVIEINPS 95
>PSB8_CANFA (Q5W416) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)| (Proteasome component C13) (Macropain subunit C13) (Multicatalytic endopeptidase complex subunit C13) Length = 276 Score = 48.5 bits (114), Expect = 4e-06 Identities = 28/56 (50%), Positives = 35/56 (62%) Frame = +1 Query: 226 DGFQKATKAMVNNKKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIPT 393 +G + K MV+ GTTTL+F F GVIVA DSRA+ G YISS V K + P+ Sbjct: 60 NGEKNIRKEMVH---GTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPS 112
>PSB5_YEAST (P30656) Proteasome component PRE2 precursor (EC 3.4.25.1)| (Macropain subunit PRE2) (Proteinase YSCE subunit PRE2) (Multicatalytic endopeptidase complex subunit PRE2) Length = 287 Score = 47.8 bits (112), Expect = 6e-06 Identities = 22/40 (55%), Positives = 30/40 (75%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIP 390 GTTTL+F F G+IVA DSRA+ G +++SQTV+K + P Sbjct: 75 GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINP 114 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/14 (71%), Positives = 14/14 (100%) Frame = +3 Query: 366 EKIIEINPYMLGTM 407 +K+IEINP++LGTM Sbjct: 107 KKVIEINPFLLGTM 120
>PSB8_RAT (P28064) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)| (Proteasome component C13) (Macropain subunit C13) (Multicatalytic endopeptidase complex subunit C13) Length = 276 Score = 47.0 bits (110), Expect = 1e-05 Identities = 25/54 (46%), Positives = 31/54 (57%) Frame = +1 Query: 229 GFQKATKAMVNNKKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIP 390 G + K + GTTTL+F F GVIVA DSRAS G YI++ V K + P Sbjct: 58 GDDQERKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATIRVNKVIEINP 111 Score = 28.9 bits (63), Expect = 3.0 Identities = 11/13 (84%), Positives = 13/13 (100%) Frame = +3 Query: 369 KIIEINPYMLGTM 407 K+IEINPY+LGTM Sbjct: 105 KVIEINPYLLGTM 117
>PSB5_SCHPO (P30655) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome component pts1) (Macropain subunit pts1) (Multicatalytic endopeptidase complex subunit pts1) Length = 272 Score = 45.8 bits (107), Expect = 2e-05 Identities = 22/51 (43%), Positives = 31/51 (60%) Frame = +1 Query: 238 KATKAMVNNKKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIP 390 K ++ GTTTL+F + G++V DSRAS G I+SQTV+K + P Sbjct: 50 KNKHCLIKMNHGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINP 100 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/14 (71%), Positives = 14/14 (100%) Frame = +3 Query: 366 EKIIEINPYMLGTM 407 +K+IEINPY+LGT+ Sbjct: 93 KKVIEINPYLLGTL 106
>PSB8_MOUSE (P28063) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)| (Proteasome component C13) (Macropain subunit C13) (Multicatalytic endopeptidase complex subunit C13) Length = 276 Score = 45.4 bits (106), Expect = 3e-05 Identities = 24/54 (44%), Positives = 30/54 (55%) Frame = +1 Query: 229 GFQKATKAMVNNKKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIP 390 G + + GTTTL+F F GVIVA DSRA+ G YISS + K + P Sbjct: 58 GGDQERNVQIEMAHGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINP 111 Score = 28.9 bits (63), Expect = 3.0 Identities = 11/13 (84%), Positives = 13/13 (100%) Frame = +3 Query: 369 KIIEINPYMLGTM 407 K+IEINPY+LGTM Sbjct: 105 KVIEINPYLLGTM 117
>PSB8_HUMAN (P28062) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)| (Proteasome component C13) (Macropain subunit C13) (Multicatalytic endopeptidase complex subunit C13) Length = 276 Score = 44.7 bits (104), Expect = 5e-05 Identities = 23/40 (57%), Positives = 26/40 (65%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIP 390 GTTTL+F F GVI A DSRAS G YIS+ V K + P Sbjct: 72 GTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINP 111 Score = 28.9 bits (63), Expect = 3.0 Identities = 11/13 (84%), Positives = 13/13 (100%) Frame = +3 Query: 369 KIIEINPYMLGTM 407 K+IEINPY+LGTM Sbjct: 105 KVIEINPYLLGTM 117
>PSB6_SCHPO (O43063) Probable proteasome subunit beta type 6 precursor (EC| 3.4.25.1) Length = 226 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/45 (40%), Positives = 28/45 (62%) Frame = +1 Query: 265 KKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIPTCW 399 + GTT + + GVI+AADSR +MG YI+++ K ++L W Sbjct: 22 RMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIW 66
>PSMB_METTE (Q9P992) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 210 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/42 (42%), Positives = 31/42 (73%), Gaps = 2/42 (4%) Frame = +1 Query: 253 MVNNK--KGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRK 372 M N+K KGTTT+ + G+++A++ RA+MG +I+S+T +K Sbjct: 1 MDNDKYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKK 42
>PSMB_PYRFU (Q8U125) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 206 Score = 39.3 bits (90), Expect = 0.002 Identities = 17/39 (43%), Positives = 28/39 (71%) Frame = +1 Query: 268 KGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 KGTTT+ + +GV++AAD+RAS+G I ++ V K ++ Sbjct: 9 KGTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKI 47
>PSMB_SULSO (Q9UXF3) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 208 Score = 38.5 bits (88), Expect = 0.004 Identities = 18/35 (51%), Positives = 26/35 (74%) Frame = +1 Query: 268 KGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRK 372 KGTTT+ + GVI+AAD RAS G +++++ VRK Sbjct: 13 KGTTTVGIRVNDGVILAADRRASAGFFVANKMVRK 47
>PSMB_ARCFU (Q9P996) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 213 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 2/43 (4%) Frame = +1 Query: 250 AMVNNK--KGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRK 372 +M+ K KGTTT+ + GV++A + RA+MG +I+S+ +K Sbjct: 2 SMIEEKIYKGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKK 44
>PSB7_YEAST (P25043) Proteasome component PUP1 precursor (EC 3.4.25.1)| (Macropain subunit PUP1) (Proteinase YSCE subunit PUP1) (Multicatalytic endopeptidase complex subunit PUP1) Length = 261 Score = 38.1 bits (87), Expect = 0.005 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%) Frame = +1 Query: 223 FDGFQKATKAMVNN-------KKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSR 381 FD +Q+ N+ GTT + F+ GV++AAD+R++ G ++ + K R Sbjct: 6 FDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHR 65 Query: 382 LIPTCW 399 + P W Sbjct: 66 ISPKIW 71
>PSB7A_ARATH (O23710) Proteasome subunit beta type 7-A precursor (EC 3.4.25.1)| (Proteasome subunit beta type 2) (20S proteasome beta subunit B-1) (Proteasome component FA) (Proteasome component FB) Length = 273 Score = 37.7 bits (86), Expect = 0.007 Identities = 20/55 (36%), Positives = 29/55 (52%) Frame = +1 Query: 235 QKATKAMVNNKKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIPTCW 399 QK KA K GTT + IF GVI+ AD+RA+ G ++ + K + P + Sbjct: 27 QKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIY 81
>PSMB_PYRHO (O50110) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 207 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/39 (43%), Positives = 26/39 (66%) Frame = +1 Query: 268 KGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 KGTTT+ + GV++AAD RAS+G I ++ V K ++ Sbjct: 9 KGTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKI 47
>PSMB_PYRAB (Q9V0N9) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 207 Score = 37.7 bits (86), Expect = 0.007 Identities = 16/39 (41%), Positives = 26/39 (66%) Frame = +1 Query: 268 KGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 KGTTT+ + GV++AAD RAS+G + ++ V K ++ Sbjct: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKI 47
>PSB7B_ARATH (Q7DLS1) Proteasome subunit beta type 7-B precursor (EC 3.4.25.1)| (Proteasome subunit beta type 2) (20S proteasome beta subunit B-2) (Proteasome component FC) Length = 274 Score = 37.7 bits (86), Expect = 0.007 Identities = 20/55 (36%), Positives = 29/55 (52%) Frame = +1 Query: 235 QKATKAMVNNKKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIPTCW 399 QK KA K GTT + IF GVI+ AD+RA+ G ++ + K + P + Sbjct: 27 QKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIY 81
>PSMB_METJA (Q58634) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 224 Score = 37.0 bits (84), Expect = 0.011 Identities = 16/35 (45%), Positives = 23/35 (65%) Frame = +1 Query: 268 KGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRK 372 KGTTT+ I D VI+A D RAS+G ++ + +K Sbjct: 5 KGTTTVGLICDDAVILATDKRASLGNLVADKEAKK 39
>PSB6_YEAST (P38624) Proteasome component PRE3 precursor (EC 3.4.25.1)| (Macropain subunit PRE3) (Proteinase YSCE subunit PRE3) (Multicatalytic endopeptidase complex subunit PRE3) Length = 215 Score = 36.6 bits (83), Expect = 0.015 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIPTCW 399 GT+ ++ F GVI+ ADSR + G YI+++ K +R+ W Sbjct: 19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIW 61
>PSB6_RAT (P28073) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)| (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y) (Proteasome chain 5) Length = 238 Score = 35.4 bits (80), Expect = 0.033 Identities = 15/34 (44%), Positives = 23/34 (67%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRK 372 GTT ++ FD GV++ ADSR + G YI+++ K Sbjct: 33 GTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDK 66
>PSB6_HUMAN (P28072) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)| (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y) Length = 239 Score = 35.4 bits (80), Expect = 0.033 Identities = 15/34 (44%), Positives = 23/34 (67%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRK 372 GTT ++ FD GV++ ADSR + G YI+++ K Sbjct: 34 GTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDK 67
>PSB9_SALSA (Q9DD33) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Low molecular mass protein 2) Length = 217 Score = 34.3 bits (77), Expect = 0.072 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = +1 Query: 265 KKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 K GTT ++ FD GV++ +DSR S G + ++ + K S L Sbjct: 16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLL 55
>PSB9_ONCMY (Q9PT26) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Low molecular mass protein 2) Length = 217 Score = 34.3 bits (77), Expect = 0.072 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = +1 Query: 265 KKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 K GTT ++ FD GV++ +DSR S G + ++ + K S L Sbjct: 16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLL 55
>PSB6_MOUSE (Q60692) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)| (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y) Length = 238 Score = 33.5 bits (75), Expect = 0.12 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRK 372 GTT ++ F+ GV++ ADSR + G YI+++ K Sbjct: 33 GTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDK 66
>PSB6_TOBAC (P93395) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)| (Proteasome delta chain) (Tobacco cryptogein-induced protein 7) (tcI 7) Length = 234 Score = 33.1 bits (74), Expect = 0.16 Identities = 14/38 (36%), Positives = 25/38 (65%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 GTT + ++ GV++ ADSR S G Y++++ K ++L Sbjct: 13 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQL 50
>PSMB_METTH (O27270) Proteasome beta subunit precursor (EC 3.4.25.1)| (Multicatalytic endopeptidase complex beta subunit) Length = 210 Score = 33.1 bits (74), Expect = 0.16 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +1 Query: 259 NNKKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRK 372 N KGTTT+ GV+ A + RASMG I+ + K Sbjct: 5 NTLKGTTTVGITCKDGVVFATERRASMGNLIAHKATDK 42
>PSB6_ARATH (Q8LD27) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)| (Proteasome subunit beta type 1) (20S proteasome beta subunit A-1) (Proteasome component CD) Length = 233 Score = 33.1 bits (74), Expect = 0.16 Identities = 14/38 (36%), Positives = 25/38 (65%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 GTT + ++ GV++ ADSR S G Y++++ K ++L Sbjct: 12 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQL 49
>PSB9_RAT (P28077) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 32.7 bits (73), Expect = 0.21 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 GTT ++ FD GV+V +DSR S G + ++ K S L Sbjct: 20 GTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPL 57
>PSB9_MUSDU (O35521) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 32.7 bits (73), Expect = 0.21 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 GTT ++ FD GV+V +DSR S G + ++ K S L Sbjct: 20 GTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPL 57
>PSB9_ORYLA (Q8UW64) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Low molecular mass protein 2) Length = 217 Score = 32.7 bits (73), Expect = 0.21 Identities = 15/40 (37%), Positives = 25/40 (62%) Frame = +1 Query: 265 KKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 K GTT ++ F+ GV++ +DSR S G + ++ + K S L Sbjct: 16 KTGTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPL 55
>PSB9_MUSSI (O35524) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 32.0 bits (71), Expect = 0.36 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 GTT ++ FD GV+V +DSR S G + ++ K S L Sbjct: 20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPL 57
>PSB9_MUSPL (O35523) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 32.0 bits (71), Expect = 0.36 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 GTT ++ FD GV+V +DSR S G + ++ K S L Sbjct: 20 GTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPL 57
>PSB9_MUSMB (O35522) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 32.0 bits (71), Expect = 0.36 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 GTT ++ FD GV+V +DSR S G + ++ K S L Sbjct: 20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPL 57
>PSB9_MOUSE (P28076) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) (LMP-2d) Length = 219 Score = 32.0 bits (71), Expect = 0.36 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 GTT ++ FD GV+V +DSR S G + ++ K S L Sbjct: 20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPL 57
>PSB4_YEAST (P30657) Proteasome component PRE4 (EC 3.4.25.1) (Macropain subunit| PRE4) (Proteinase YSCE subunit PRE4) (Multicatalytic endopeptidase complex subunit PRE4) Length = 266 Score = 32.0 bits (71), Expect = 0.36 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%) Frame = +1 Query: 253 MVNNKK----GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIP 390 MVN ++ GT+ +S +D GVI+AAD+ S G + V RLIP Sbjct: 31 MVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGV---ERLIP 77
>PSB10_HUMAN (P40306) Proteasome subunit beta type 10 precursor (EC 3.4.25.1)| (Proteasome MECl-1) (Macropain subunit MECl-1) (Multicatalytic endopeptidase complex subunit MECl-1) Length = 273 Score = 31.6 bits (70), Expect = 0.47 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +1 Query: 265 KKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIP 390 K GTT +F GVI+ AD+RA+ ++ ++ K + P Sbjct: 37 KTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAP 78
>HSLV_WOLPM (P61479) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 184 Score = 31.2 bits (69), Expect = 0.61 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +1 Query: 259 NNKK-GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 NNK GTT LS DK V+V D + S+G + +K RL Sbjct: 6 NNKMYGTTILSIRKDKSVVVIGDGQVSLGHTVIKSGAKKVRRL 48
>PSB10_MOUSE (O35955) Proteasome subunit beta type 10 precursor (EC 3.4.25.1)| (Proteasome MECl-1) (Macropain subunit MECl-1) (Multicatalytic endopeptidase complex subunit MECl-1) Length = 273 Score = 30.8 bits (68), Expect = 0.80 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +1 Query: 265 KKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIP 390 K GTT +F GVI+ AD+RA+ ++ ++ K + P Sbjct: 37 KTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAP 78
>PSB9_HUMAN (P28065) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 30.8 bits (68), Expect = 0.80 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 GTT ++ FD GV++ +DSR S G + ++ K S L Sbjct: 20 GTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPL 57
>PSB7_RAT (Q9JHW0) Proteasome subunit beta type 7 precursor (EC 3.4.25.1)| (Proteasome subunit Z) (Macropain chain Z) (Multicatalytic endopeptidase complex chain Z) Length = 277 Score = 30.8 bits (68), Expect = 0.80 Identities = 15/58 (25%), Positives = 28/58 (48%) Frame = +1 Query: 226 DGFQKATKAMVNNKKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIPTCW 399 D +K K K GTT ++ G+++ AD+RA+ G ++ + K + P + Sbjct: 28 DFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIY 85
>PSB7_MOUSE (P70195) Proteasome subunit beta type 7 precursor (EC 3.4.25.1)| (Proteasome subunit Z) (Macropain chain Z) (Multicatalytic endopeptidase complex chain Z) Length = 277 Score = 30.8 bits (68), Expect = 0.80 Identities = 15/58 (25%), Positives = 28/58 (48%) Frame = +1 Query: 226 DGFQKATKAMVNNKKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIPTCW 399 D +K K K GTT ++ G+++ AD+RA+ G ++ + K + P + Sbjct: 28 DFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIY 85
>PSB7_SCHPO (Q09841) Probable proteasome subunit beta type 7 precursor (EC| 3.4.25.1) Length = 267 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIPTCW 399 GTT + I +++ AD+RA+ G I+ + +K + P W Sbjct: 35 GTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIW 77
>PSB7_HUMAN (Q99436) Proteasome subunit beta type 7 precursor (EC 3.4.25.1)| (Proteasome subunit Z) (Macropain chain Z) (Multicatalytic endopeptidase complex chain Z) Length = 277 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/45 (26%), Positives = 24/45 (53%) Frame = +1 Query: 265 KKGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLIPTCW 399 K GTT ++ G+++ AD+RA+ G ++ + K + P + Sbjct: 41 KTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIY 85
>HSLV_COXBU (Q83A95) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 181 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +1 Query: 268 KGTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRL 384 +GTT LS + V++ D + SMG I RK RL Sbjct: 5 RGTTILSVRRNGKVVIGGDGQVSMGSTIMKANARKVRRL 43
>PSB4_XENLA (P28024) Proteasome subunit beta type 4 precursor (EC 3.4.25.1)| (Proteasome beta chain) (Macropain beta chain) (Multicatalytic endopeptidase complex beta chain) (Proteasome chain 3) (Fragment) Length = 242 Score = 28.9 bits (63), Expect = 3.0 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLI 387 GT+ L FD GVI+AAD +G Y S R SR++ Sbjct: 31 GTSVLGVKFDGGVIIAAD---MLGSYGSLARFRNISRIM 66
>PSB4_MOUSE (P99026) Proteasome subunit beta type 4 precursor (EC 3.4.25.1)| (Proteasome beta chain) (Macropain beta chain) (Multicatalytic endopeptidase complex beta chain) (Proteasome chain 3) Length = 264 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLI 387 GT+ L FD GV++AAD +G Y S R SR++ Sbjct: 53 GTSVLGVKFDGGVVIAAD---MLGSYGSLARFRNISRIM 88
>PSB4_DROME (Q9VNA5) Probable proteasome subunit beta type 4 (EC 3.4.25.1)| Length = 268 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRK 372 GT+ L +D GV++AAD+ S G Q + + Sbjct: 57 GTSVLGIRYDSGVMLAADTLVSYGSMARYQNIER 90
>PSB4_RAT (P34067) Proteasome subunit beta type 4 precursor (EC 3.4.25.1)| (Proteasome beta chain) (Macropain beta chain) (Multicatalytic endopeptidase complex beta chain) (Proteasome chain 3) (RN3) Length = 263 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRKSSRLI 387 GT+ L FD GV++AAD +G Y S R SR++ Sbjct: 52 GTSVLGVKFDCGVVIAAD---MLGSYGSLARFRNISRIM 87
>NUOF_AQUAE (O66841) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH| dehydrogenase I, chain F) (NDH-1, chain F) Length = 426 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -2 Query: 360 LRRYVAAHAGPGVGGDDDALVED-EGERGGP 271 L YVA AG + G++ AL+E EG+RG P Sbjct: 169 LEIYVARGAGAYICGEETALIESLEGKRGHP 199
>CBPA_CLOCL (P38058) Cellulose-binding protein A precursor| Length = 1848 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +1 Query: 244 TKAMVNNKKGTTTLSFIFDKG 306 +KA + + GT TL F+FDKG Sbjct: 1574 SKAYLAKQTGTVTLEFVFDKG 1594
>HSLV_RICTY (Q68X53) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 182 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRK 372 GTT L ++ +I+AAD + S G + T RK Sbjct: 9 GTTILCLKKNEEIIIAADGQVSHGNTVLKSTARK 42
>HSLV_RICCN (Q92II7) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 182 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +1 Query: 271 GTTTLSFIFDKGVIVAADSRASMGGYISSQTVRK 372 GTT L ++ +I+AAD + S G + T RK Sbjct: 9 GTTILCLKKNEEIIIAADGQVSHGNTVLKSTARK 42
>VL2_HPV48 (Q80925) Minor capsid protein L2| Length = 502 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%) Frame = -2 Query: 351 YVAAHAGPGVGGDD-------DALVEDEGERGGP 271 ++A AGPG+GG+D D + G GGP Sbjct: 122 FIAPDAGPGIGGEDIELFTFRDPATDVGGVSGGP 155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,432,790 Number of Sequences: 219361 Number of extensions: 397616 Number of successful extensions: 1419 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 1392 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1419 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
