ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast78e12 |
|---|---|
| Clone Library Name | barley_pub |
>BSPB_POPDE (Q09117) Bark storage protein B precursor| Length = 312 Score = 43.1 bits (100), Expect = 3e-04 Identities = 24/69 (34%), Positives = 36/69 (52%) Frame = +2 Query: 227 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 406 +GLV + + +S + ++DI GRRF GT+ G S+V V TG +N Sbjct: 29 LGLVFTSDNNERALQDSGLYSPDSEDSSVDIAGRRFHSGTLNGSSIVYVKTGSHSVNMAT 88 Query: 407 TTQMLLSLF 433 T Q+LL+ F Sbjct: 89 TLQILLARF 97
>BSPA_POPDE (Q07469) Bark storage protein A precursor| Length = 312 Score = 42.0 bits (97), Expect = 6e-04 Identities = 24/69 (34%), Positives = 35/69 (50%) Frame = +2 Query: 227 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 406 +GLV + + +S + ++DI GRRF GT+ G S+V V TG +N Sbjct: 29 LGLVFTSDNNERALQDSGLYSPDSEDSSVDIAGRRFHSGTLNGSSIVYVKTGSPSVNMAT 88 Query: 407 TTQMLLSLF 433 T Q+LL F Sbjct: 89 TLQILLVRF 97
>Y2293_MYCTU (Q50673) Hypothetical protein Rv2293c/MT2350 precursor| Length = 246 Score = 34.7 bits (78), Expect = 0.10 Identities = 14/36 (38%), Positives = 24/36 (66%) Frame = +2 Query: 326 RRFRFGTIEGQSVVMVMTGLSMLNAGLTTQMLLSLF 433 RR+ G+I G+ V++ MTG+ ++NA TT+ + F Sbjct: 69 RRYYLGSISGKKVIVAMTGIGLVNATNTTETAFARF 104
>ASSY_STRMU (Q8CWZ0) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 396 Score = 33.1 bits (74), Expect = 0.30 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 9/81 (11%) Frame = -3 Query: 424 QQHLGGQTSVEHAQSCHDHDDA-------LAFDGSKAKPSPLDVHVRDALAG-HEAGRLE 269 ++ G SVE A ++ D +A DG + K + L + + LAG H GR++ Sbjct: 197 EEAFGITNSVEEAPDKAEYVDITFKEGKPVALDGQEMKLADL-IQKLNVLAGKHGVGRID 255 Query: 268 H-RNHLVGVGHDEADERPGAV 209 H N LVG+ E E PGAV Sbjct: 256 HVENRLVGIKSREIYECPGAV 276
>SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-determining| factor) Length = 311 Score = 33.1 bits (74), Expect = 0.30 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +1 Query: 292 QQEHP*HGHPRAKVSLWNHRRPKRRHGHDRTEHAQRWSDHP 414 QQ+ H H + + L NH +++ HD + Q++ DHP Sbjct: 200 QQQQQFHDHQQQQQQLHNHHHQQQQQFHDYPQQQQQFHDHP 240
>CDC54_YEAST (P30665) Cell division control protein 54| Length = 933 Score = 31.6 bits (70), Expect = 0.87 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = +2 Query: 236 VVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGLTTQ 415 VVPN + P L SP+ S S DI GR +G+ + G S LN ++Q Sbjct: 19 VVPNPDSVPPQLSSPALFYSSSSSQGDIYGRNNSQNLSQGEGNIRAAIGSSPLNFPSSSQ 78
>ASSY_BACLD (Q65G67) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 403 Score = 31.6 bits (70), Expect = 0.87 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -3 Query: 358 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 209 ++ DG+ S L + + + H GR++H N LVG+ E E PGA+ Sbjct: 228 VSIDGTHYPLSDLILKLNELAGAHGVGRIDHVENRLVGIKSREVYECPGAM 278
>ASSY_BACSU (O34347) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 403 Score = 31.2 bits (69), Expect = 1.1 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -3 Query: 358 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 209 ++ DG S L + + + H GR++H N LVG+ E E PGA+ Sbjct: 228 VSIDGVSYSLSELILKLNEMAGAHGVGRIDHVENRLVGIKSREVYECPGAM 278
>HUTI_PSESM (Q87UL9) Imidazolonepropionase (EC 3.5.2.7)| (Imidazolone-5-propionate hydrolase) Length = 401 Score = 30.8 bits (68), Expect = 1.5 Identities = 17/67 (25%), Positives = 27/67 (40%) Frame = -3 Query: 373 DHDDALAFDGSKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPGAVRPADG 194 +HD+ + G+ P +D H G+ +G E R L GV + E G + Sbjct: 46 EHDNCIDLGGAWVTPGLIDCHTHTVFGGNRSGEFEQR--LQGVSYAEIAAAGGGIASTVR 103 Query: 193 CPRLLSD 173 R S+ Sbjct: 104 ATRAASE 110
>ASSY_GEOKA (Q5KW94) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 406 Score = 30.4 bits (67), Expect = 1.9 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = -3 Query: 340 KAKPSPLDVHVRDALAG-HEAGRLEH-RNHLVGVGHDEADERPGAV 209 KA P + +ALAG H GR++H N LVG+ E E PGA+ Sbjct: 232 KAYPLAQLILELNALAGKHGVGRIDHVENRLVGIKSREVYECPGAI 277
>NORR2_RALEU (Q9K4U8) Nitric oxide reductase transcription regulator norR2| Length = 521 Score = 29.6 bits (65), Expect = 3.3 Identities = 20/58 (34%), Positives = 23/58 (39%) Frame = -3 Query: 343 SKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPGAVRPADGCPRLLSDV 170 S+ + PL VHV A E H G ERPG ADG P L +V Sbjct: 238 SRRRAQPL-VHVNCAALPESLAESELFGHARGAFSGATGERPGRFEAADGQPLFLDEV 294
>ASSY_STRT2 (Q5M2K2) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 399 Score = 29.6 bits (65), Expect = 3.3 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -3 Query: 358 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 209 +A +G + K + L + H GR++H N LVG+ E E PGA+ Sbjct: 226 VALNGKEMKLADLIQEMNVIAGKHGVGRIDHVENRLVGIKSREIYECPGAI 276
>ASSY_STRT1 (Q5LXZ8) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 399 Score = 29.6 bits (65), Expect = 3.3 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -3 Query: 358 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 209 +A +G + K + L + H GR++H N LVG+ E E PGA+ Sbjct: 226 VALNGKEMKLADLIQEMNVIAGKHGVGRIDHVENRLVGIKSREIYECPGAI 276
>ASSY_STRR6 (Q8DRI5) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 398 Score = 29.3 bits (64), Expect = 4.3 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -3 Query: 358 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 209 ++ +G K + L + + H GR++H N LVG+ E E PGAV Sbjct: 226 VSLNGEVLKLADLIQKLNEIAGKHGVGRIDHVENRLVGIKSREIYECPGAV 276
>MAAY3_SCHCO (P37934) Mating-type protein A-alpha Y3| Length = 926 Score = 28.5 bits (62), Expect = 7.4 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Frame = -1 Query: 405 RPALSMLSPVMTMTTLWPSMVPK-RNLRP-WMSMLGMLLLATKLGDSSTGTIS*VLGTTR 232 +PA S S T + + ++P+ N P W +++GM T GT S LG T Sbjct: 830 QPAASFDSSSETSSMDFNWLLPQCANTAPDWSALIGMTPSTTSQIHVLGGTYSCELGGTN 889 Query: 231 PTNGPARFA 205 TN P FA Sbjct: 890 TTNAPLNFA 898
>LON_BRUSU (Q8G0I7) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 329 RFRFGTIEGQSVVMVMTGLSMLNAG 403 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>LON_BRUME (Q8YHC6) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 329 RFRFGTIEGQSVVMVMTGLSMLNAG 403 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>LON_BRUAB (P0C113) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 329 RFRFGTIEGQSVVMVMTGLSMLNAG 403 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>LON_BRUA2 (Q2YPX3) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 329 RFRFGTIEGQSVVMVMTGLSMLNAG 403 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>ZN358_HUMAN (Q9NW07) Zinc finger protein 358| Length = 481 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -3 Query: 346 GSKAKPSPLDVHVRDALAGHEAG 278 GS++ PSP V D AGH+AG Sbjct: 394 GSRSTPSPTPVESSDPKAGHDAG 416
>ZEP1_MOUSE (Q03172) Zinc finger protein 40 (Transcription factor alphaA-CRYBP1)| (Alpha A-crystallin-binding protein I) (Alpha A-CRYBP1) Length = 2688 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +3 Query: 195 PSAGRTAPGRSSASSCPTPT 254 PSAG PGRS A + P PT Sbjct: 2618 PSAGHVLPGRSPAQAQPAPT 2637
>RS5_CAMJR (Q5HSA7) 30S ribosomal protein S5| Length = 147 Score = 26.2 bits (56), Expect(2) = 8.3 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -3 Query: 268 HRNHLVGVGHDEADERPGAVRPA 200 +R LVGVG+ +A E P A+R A Sbjct: 39 NRKGLVGVGYGKAKEVPDAIRKA 61 Score = 20.8 bits (42), Expect(2) = 8.3 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -1 Query: 192 AHVF*VMYPSAAVAISVTATRTTAMSCCRTPPMVELAPFLDM 67 AH V Y ++ + + + T ++ T P+VELA D+ Sbjct: 80 AHDVEVKYNASRILLKPASEGTGVIAGGSTRPIVELAGIKDI 121
>RS5_CAMJE (Q9PLY8) 30S ribosomal protein S5| Length = 147 Score = 26.2 bits (56), Expect(2) = 8.3 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -3 Query: 268 HRNHLVGVGHDEADERPGAVRPA 200 +R LVGVG+ +A E P A+R A Sbjct: 39 NRKGLVGVGYGKAKEVPDAIRKA 61 Score = 20.8 bits (42), Expect(2) = 8.3 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -1 Query: 192 AHVF*VMYPSAAVAISVTATRTTAMSCCRTPPMVELAPFLDM 67 AH V Y ++ + + + T ++ T P+VELA D+ Sbjct: 80 AHDVEVKYNASRILLKPASEGTGVIAGGSTRPIVELAGIKDI 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,689,678 Number of Sequences: 219361 Number of extensions: 1081375 Number of successful extensions: 3311 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3210 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3307 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
