ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast78e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY108102.1| Zea mays PCO073188 mRNA sequence 76 1e-10
2ref|NM_188605.1| Oryza sativa (japonica cultivar-group), Ozsa820... 74 4e-10
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
4dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
5dbj|AK059801.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
6dbj|AK105037.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
7dbj|AK093337.1| Homo sapiens cDNA FLJ36018 fis, clone TESTI20163... 48 0.024
8gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 48 0.024
9dbj|AK107749.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.024
10dbj|AK060557.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.024
11gb|AY100452.1| Mus musculus lmb145-cap1-243 protein precursor, m... 46 0.095
12dbj|AK122627.1| Homo sapiens cDNA FLJ16048 fis, clone FEBRA20083... 46 0.095
13dbj|AK027301.2| Homo sapiens cDNA FLJ14395 fis, clone HEMBA10032... 46 0.095
14dbj|AK024117.1| Homo sapiens cDNA FLJ14055 fis, clone HEMBB10002... 46 0.095
15dbj|AK105040.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.095
16dbj|AK060609.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.095
17gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.37
18dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
19emb|AL354826.6| Human DNA sequence from clone RP11-286M16 on chr... 42 1.5
20gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide... 42 1.5
21gb|AF259792.1| Homo sapiens p250R mRNA, complete cds 42 1.5
22gb|AC123528.2| Oryza sativa chromosome 11 clone OSJNBa0078E03, ... 40 5.8
23gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 5.8
24gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 5.8
25gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 5.8
26gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.8
27gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.8
28emb|BX039814.1|CNS092VU Single read from an extremity of a full-... 40 5.8
29emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.8
30emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.8
31emb|AJ621385.1| Gallus gallus RAD50 gene (partial), IL5 gene, IR... 40 5.8
32gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.8
33gb|AC105264.3| Drosophila melanogaster 3L BAC RP98-17K18 (Roswel... 40 5.8
34gb|AC010118.8| Drosophila melanogaster 3L BAC RP98-10D15 (Roswel... 40 5.8
35dbj|AK024257.1| Homo sapiens cDNA FLJ14195 fis, clone NT2RP30017... 40 5.8
36gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequ... 40 5.8
37ref|NM_206235.1| Drosophila melanogaster CG13921-RB, transcript ... 40 5.8
38ref|NM_139399.1| Drosophila melanogaster CG13921-RA, transcript ... 40 5.8
39dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
40dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
41gb|AF448145.2| Myxococcus xanthus che3 chemosensory regulator ge... 40 5.8
42dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 40 5.8
43dbj|AP005468.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
44gb|AE003472.1| Drosophila melanogaster chromosome 3L, section 6 ... 40 5.8
45gb|AC005557.1|AC005557 Drosophila melanogaster, chromosome 3L, r... 40 5.8
46gb|BT001721.1| Drosophila melanogaster RE69223 full insert cDNA 40 5.8
47gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
48dbj|AP006360.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 5.8 
>gb|AY108102.1| Zea mays PCO073188 mRNA sequence
          Length = 408

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 104/126 (82%)
 Strand = Plus / Plus

                                                                       
Query: 136 ggcggtgacgctaatggccacggcggcggaggggtacatcactcagaagacgtgggcagc 195
           |||||||  ||| ||||| |||||| ||||||| | |||| |  |||||||||||   ||
Sbjct: 166 ggcggtggtgctcatggcaacggcgtcggagggcttcatctccaagaagacgtggagcgc 225

                                                                       
Query: 196 catccgccgggcgaaccgcgccgggccgttcgtcggcctcgtcgtgcccaacacctacga 255
           |||||| |||||| |||||| |||||| ||||| || || || ||||||||| |||||||
Sbjct: 226 catccggcgggcggaccgcgacgggcccttcgtggggctggtggtgcccaacgcctacga 285

                 
Query: 256 gatggt 261
           ||||||
Sbjct: 286 gatggt 291



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 318 tccaagggcgaaggtttcgctttggaaccatcgaaggccaaagcgtcgtcatggtcatga 377
           ||||||||||| | || ||||| ||||| || | | |||||| ||| |||||||||||||
Sbjct: 348 tccaagggcgacgattccgcttcggaactattggaagccaaaacgttgtcatggtcatga 407

            
Query: 378 c 378
           |
Sbjct: 408 c 408
to top
>ref|NM_188605.1| Oryza sativa (japonica cultivar-group), Ozsa8208 predicted mRNA
          Length = 996

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 97/115 (84%), Gaps = 4/115 (3%)
 Strand = Plus / Plus

                                                                       
Query: 149 atggccacggcggcggaggggtacatcactcagaagacgtgggcagccatccgccgggcg 208
           ||||| |||||||||||||||| |||| |   |||||||||| | ||| |||| ||||||
Sbjct: 43  atggcgacggcggcggaggggttcatctcggcgaagacgtggtcggccgtccggcgggcg 102

                                                                  
Query: 209 aac---cgcgccgggccgttcgtcggcctcgtcgtgcccaacacctacgagatgg 260
           |||   || | |||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 103 aacgaccgtggcgggccgttcgtgggc-tcgtcgtgcccaacgcctacgagatgg 156



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 398 gctggtctgaccacccagatgctgctgagcctgttc 433
           ||||| ||||| |||||| |||||||||||||||||
Sbjct: 229 gctgggctgacgacccagctgctgctgagcctgttc 264
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 97/115 (84%), Gaps = 4/115 (3%)
 Strand = Plus / Minus

                                                                           
Query: 149     atggccacggcggcggaggggtacatcactcagaagacgtgggcagccatccgccgggcg 208
               ||||| |||||||||||||||| |||| |   |||||||||| | ||| |||| ||||||
Sbjct: 7187148 atggcgacggcggcggaggggttcatctcggcgaagacgtggtcggccgtccggcgggcg 7187089

                                                                      
Query: 209     aac---cgcgccgggccgttcgtcggcctcgtcgtgcccaacacctacgagatgg 260
               |||   || | |||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 7187088 aacgaccgtggcgggccgttcgtgggc-tcgtcgtgcccaacgcctacgagatgg 7187035



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                           
Query: 321     aagggcgaaggtttcgctttggaaccatcgaaggccaaagcgtcgtcatggtcatgacag 380
               |||| |||||||||||||| ||  |||| |  ||||||| ||| ||||||||||||||||
Sbjct: 7186079 aaggacgaaggtttcgcttcggtgccattgggggccaaaacgttgtcatggtcatgacag 7186020

                          
Query: 381     gactgagcatg 391
               | || ||||||
Sbjct: 7186019 ggcttagcatg 7186009



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 398     gctggtctgaccacccagatgctgctgagcctgttc 433
               ||||| ||||| |||||| |||||||||||||||||
Sbjct: 7185808 gctgggctgacgacccagctgctgctgagcctgttc 7185773
to top
>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0485D09
          Length = 150594

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 97/115 (84%), Gaps = 4/115 (3%)
 Strand = Plus / Minus

                                                                         
Query: 149   atggccacggcggcggaggggtacatcactcagaagacgtgggcagccatccgccgggcg 208
             ||||| |||||||||||||||| |||| |   |||||||||| | ||| |||| ||||||
Sbjct: 81796 atggcgacggcggcggaggggttcatctcggcgaagacgtggtcggccgtccggcgggcg 81737

                                                                    
Query: 209   aac---cgcgccgggccgttcgtcggcctcgtcgtgcccaacacctacgagatgg 260
             |||   || | |||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 81736 aacgaccgtggcgggccgttcgtgggc-tcgtcgtgcccaacgcctacgagatgg 81683



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                         
Query: 321   aagggcgaaggtttcgctttggaaccatcgaaggccaaagcgtcgtcatggtcatgacag 380
             |||| |||||||||||||| ||  |||| |  ||||||| ||| ||||||||||||||||
Sbjct: 80727 aaggacgaaggtttcgcttcggtgccattgggggccaaaacgttgtcatggtcatgacag 80668

                        
Query: 381   gactgagcatg 391
             | || ||||||
Sbjct: 80667 ggcttagcatg 80657



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 398   gctggtctgaccacccagatgctgctgagcctgttc 433
             ||||| ||||| |||||| |||||||||||||||||
Sbjct: 80456 gctgggctgacgacccagctgctgctgagcctgttc 80421
to top
>dbj|AK059801.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-F12,
          full insert sequence
          Length = 1007

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 2  atcgagtcggctttgttggcctactgga 29
          ||||||||||||||||||||||||||||
Sbjct: 4  atcgagtcggctttgttggcctactgga 31
to top
>dbj|AK105037.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C07, full
           insert sequence
          Length = 1275

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 2   atcgagtcggctttgttggcctactggac 30
           ||||||||||| |||||||||||||||||
Sbjct: 531 atcgagtcggccttgttggcctactggac 559
to top
>dbj|AK093337.1| Homo sapiens cDNA FLJ36018 fis, clone TESTI2016337, highly similar to
            BASIGIN PRECURSOR
          Length = 3712

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 2    atcgagtcggctttgttggcctactgga 29
            ||||||||||| ||||||||||||||||
Sbjct: 2095 atcgagtcggccttgttggcctactgga 2122
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 221     ccgttcgtcggcctcgtcgtgcccaaca 248
               |||||||||||||||||||| |||||||
Sbjct: 4982931 ccgttcgtcggcctcgtcgtccccaaca 4982958
to top
>dbj|AK107749.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-H07, full
           insert sequence
          Length = 754

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 2   atcgagtcggctttgttggcctactgga 29
           ||||||||||| ||||||||||||||||
Sbjct: 707 atcgagtcggccttgttggcctactgga 734
to top
>dbj|AK060557.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D11, full
            insert sequence
          Length = 2744

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 2    atcgagtcggctttgttggcctactgga 29
            ||||||||||| ||||||||||||||||
Sbjct: 1137 atcgagtcggccttgttggcctactgga 1164
to top
>gb|AY100452.1| Mus musculus lmb145-cap1-243 protein precursor, mRNA, partial cds
          Length = 354

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 2  atcgagtcggctttgttggcctactgg 28
          ||||||||||| |||||||||||||||
Sbjct: 30 atcgagtcggccttgttggcctactgg 56



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 2  atcgagtcggctttgttggcctact 26
          ||||||||||| |||||||||||||
Sbjct: 2  atcgagtcggccttgttggcctact 26
to top
>dbj|AK122627.1| Homo sapiens cDNA FLJ16048 fis, clone FEBRA2008311, weakly  similar
            to GALANIN RECEPTOR TYPE 1
          Length = 5671

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 2    atcgagtcggctttgttggcctactgg 28
            ||||||||||| |||||||||||||||
Sbjct: 3124 atcgagtcggccttgttggcctactgg 3150
to top
>dbj|AK027301.2| Homo sapiens cDNA FLJ14395 fis, clone HEMBA1003250, weakly
          similar to PROTEIN KINASE APK1A (EC 2.7.1.-)
          Length = 1781

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 2  atcgagtcggctttgttggcctactgg 28
          ||||||||||| |||||||||||||||
Sbjct: 2  atcgagtcggccttgttggcctactgg 28
to top
>dbj|AK024117.1| Homo sapiens cDNA FLJ14055 fis, clone HEMBB1000264, weakly similar to
            CHL1 PROTEIN
          Length = 3181

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 2    atcgagtcggctttgttggcctactgg 28
            ||||||||||| |||||||||||||||
Sbjct: 1747 atcgagtcggccttgttggcctactgg 1773
to top
>dbj|AK105040.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-E07, full
            insert sequence
          Length = 2278

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 2    atcgagtcggctttgttggcctactgg 28
            ||||||||||| |||||||||||||||
Sbjct: 1403 atcgagtcggccttgttggcctactgg 1429
to top
>dbj|AK060609.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D03, full
           insert sequence
          Length = 955

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 2   atcgagtcggctttgttggcctactgg 28
           ||||||||||| |||||||||||||||
Sbjct: 562 atcgagtcggccttgttggcctactgg 588
to top
>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBa0087J09, complete sequence
          Length = 153351

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 135    tggcggtgacgctaatggccacggcggcgg 164
              ||||||| ||||||||||||| ||||||||
Sbjct: 128654 tggcggtcacgctaatggccaaggcggcgg 128683
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 135      tggcggtgacgctaatggccacggcggcgg 164
                ||||||| ||||||||||||| ||||||||
Sbjct: 18486224 tggcggtcacgctaatggccaaggcggcgg 18486253
to top
>emb|AL354826.6| Human DNA sequence from clone RP11-286M16 on chromosome 1 Contains a
              novel gene, complete sequence
          Length = 203279

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 414    agatgctgctgagcctgttcc 434
              |||||||||||||||||||||
Sbjct: 132755 agatgctgctgagcctgttcc 132735
to top
>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145
             biosynthetic gene cluster, complete sequence
          Length = 126933

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 150   tggccacggcggcggaggggt 170
             |||||||||||||||||||||
Sbjct: 27070 tggccacggcggcggaggggt 27090
to top
>gb|AF259792.1| Homo sapiens p250R mRNA, complete cds
          Length = 5123

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 5  gagtcggctttgttggcctactgga 29
          |||||||| ||||||||||||||||
Sbjct: 29 gagtcggccttgttggcctactgga 53
to top
>gb|AC123528.2| Oryza sativa chromosome 11 clone  OSJNBa0078E03, complete sequence
          Length = 149493

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    ggccacggcggcggaggggt 170
              ||||||||||||||||||||
Sbjct: 122382 ggccacggcggcggaggggt 122401



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    ggccacggcggcggaggggt 170
              ||||||||||||||||||||
Sbjct: 117551 ggccacggcggcggaggggt 117532
to top
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 414     agatgctgctgagcctgttc 433
               ||||||||||||||||||||
Sbjct: 1737145 agatgctgctgagcctgttc 1737126
to top
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 224     ttcgtcggcctcgtcgtgcc 243
               ||||||||||||||||||||
Sbjct: 2901101 ttcgtcggcctcgtcgtgcc 2901082
to top
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 178     tcagaagacgtgggcagccatccgccgg 205
               ||||||||| |||||| |||||||||||
Sbjct: 3462345 tcagaagacttgggcaaccatccgccgg 3462372
to top
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 202     ccgggcgaaccgcgccgggc 221
               ||||||||||||||||||||
Sbjct: 2930937 ccgggcgaaccgcgccgggc 2930956
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   ccgggcgaaccgcgccgggc 221
             ||||||||||||||||||||
Sbjct: 58310 ccgggcgaaccgcgccgggc 58329
to top
>emb|BX039814.1|CNS092VU Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC10BC03 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 990

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 2   atcgagtcggctttgttggcctactgga 29
           ||||||||||| ||||||| ||||||||
Sbjct: 954 atcgagtcggccttgttggtctactgga 927
to top
>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16
          Length = 349640

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 221    ccgttcgtcggcctcgtcgtgcccaaca 248
              ||||||||||| |||||||| |||||||
Sbjct: 260525 ccgttcgtcgggctcgtcgtccccaaca 260498
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 202     ccgggcgaaccgcgccgggc 221
               ||||||||||||||||||||
Sbjct: 3903912 ccgggcgaaccgcgccgggc 3903931
to top
>emb|AJ621385.1| Gallus gallus RAD50 gene (partial), IL5 gene, IRF1 gene, OCTN2 gene and
             OCTN1 gene (partial)
          Length = 113629

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 351   aaggccaaagcgtcgtcatggtca 374
             ||||||||| ||||||||||||||
Sbjct: 98145 aaggccaaaacgtcgtcatggtca 98168
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 208     gaaccgcgccgggccgttcg 227
               ||||||||||||||||||||
Sbjct: 3054010 gaaccgcgccgggccgttcg 3053991
to top
>gb|AC105264.3| Drosophila melanogaster 3L BAC RP98-17K18 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 177583

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    agtcgcccagcttcgtggcc 292
              ||||||||||||||||||||
Sbjct: 139683 agtcgcccagcttcgtggcc 139702
to top
>gb|AC010118.8| Drosophila melanogaster 3L BAC RP98-10D15 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 171868

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   agtcgcccagcttcgtggcc 292
             ||||||||||||||||||||
Sbjct: 26990 agtcgcccagcttcgtggcc 27009
to top
>dbj|AK024257.1| Homo sapiens cDNA FLJ14195 fis, clone NT2RP3001723, weakly
          similar to Homo sapiens cell recognition molecule
          Caspr2 (CASPR2) mRNA
          Length = 3198

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 2  atcgagtcggctttgttggcctactgga 29
          ||||||||||| |||||| |||||||||
Sbjct: 4  atcgagtcggccttgttgacctactgga 31
to top
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    ttcgtcggcctcgtcgtgcc 243
              ||||||||||||||||||||
Sbjct: 294762 ttcgtcggcctcgtcgtgcc 294781
to top
>ref|NM_206235.1| Drosophila melanogaster CG13921-RB, transcript variant B (CG13921),
            mRNA
          Length = 4265

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  agtcgcccagcttcgtggcc 292
            ||||||||||||||||||||
Sbjct: 3389 agtcgcccagcttcgtggcc 3408
to top
>ref|NM_139399.1| Drosophila melanogaster CG13921-RA, transcript variant A (CG13921),
            mRNA
          Length = 4857

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  agtcgcccagcttcgtggcc 292
            ||||||||||||||||||||
Sbjct: 3971 agtcgcccagcttcgtggcc 3990
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 151     ggccacggcggcggaggggt 170
               ||||||||||||||||||||
Sbjct: 1758208 ggccacggcggcggaggggt 1758227
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 277      gcccagcttcgtggccagcaagagcatc 304
                ||||||||||||||| | ||||||||||
Sbjct: 18607119 gcccagcttcgtggcaaacaagagcatc 18607146
to top
>gb|AF448145.2| Myxococcus xanthus che3 chemosensory regulator gene cluster, complete
             sequence
          Length = 17906

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   tcgcccagcttcgtggccag 294
             ||||||||||||||||||||
Sbjct: 17872 tcgcccagcttcgtggccag 17891
to top
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    agcttcgtggccagcaagag 300
              ||||||||||||||||||||
Sbjct: 478483 agcttcgtggccagcaagag 478502
to top
>dbj|AP005468.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0020P04
          Length = 153894

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 277   gcccagcttcgtggccagcaagagcatc 304
             ||||||||||||||| | ||||||||||
Sbjct: 59222 gcccagcttcgtggcaaacaagagcatc 59249
to top
>gb|AE003472.1| Drosophila melanogaster chromosome 3L, section 6 of 83 of the complete
              sequence
          Length = 303191

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    agtcgcccagcttcgtggcc 292
              ||||||||||||||||||||
Sbjct: 216811 agtcgcccagcttcgtggcc 216830
to top
>gb|AC005557.1|AC005557 Drosophila melanogaster, chromosome 3L, region 62A10-62B5, P1 clones
              DS02777, DS03222, DS02345, and DS04808, complete sequence
          Length = 257867

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    agtcgcccagcttcgtggcc 292
              ||||||||||||||||||||
Sbjct: 139977 agtcgcccagcttcgtggcc 139996
to top
>gb|BT001721.1| Drosophila melanogaster RE69223 full insert cDNA
          Length = 4287

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  agtcgcccagcttcgtggcc 292
            ||||||||||||||||||||
Sbjct: 3388 agtcgcccagcttcgtggcc 3407
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 151     ggccacggcggcggaggggt 170
               ||||||||||||||||||||
Sbjct: 1755929 ggccacggcggcggaggggt 1755948
to top
>dbj|AP006360.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT42D17, TM0108,
             complete sequence
          Length = 117124

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   tcatggccgtcgtcctcgtg 136
             ||||||||||||||||||||
Sbjct: 55182 tcatggccgtcgtcctcgtg 55201


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,583,033
Number of Sequences: 3902068
Number of extensions: 2583033
Number of successful extensions: 55156
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54394
Number of HSP's gapped (non-prelim): 759
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top