>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +3

Query: 321 SLPSKPRSPILAAGARAVFALCD---VGTPWRSQWKLFSC 431
           SLP KPR PI   G   +  L D   V  P+  QW L  C
Sbjct: 203 SLPIKPRGPIDIDGFAVLGKLADNPQVSVPFELQWMLIHC 242

>POLG_PRSVW (P19724) Genome polyprotein [Contains: Nuclear inclusion protein B|
           (NI-B) (NIB) (RNA-directed RNA polymerase) (EC
           2.7.7.48); Coat protein (CP)] (Fragment)
          Length = 675

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 418 FHWLRQGVPTSQSAKTARAP-AARMGLRGLEGSERG 314
           + W+ +  P ++ AK  RAP  + +GLR L  SERG
Sbjct: 305 YQWVLEQAPFNELAKQGRAPYVSEVGLRRLYTSERG 340

>POLG_PRSVP (P19723) Genome polyprotein [Contains: Nuclear inclusion protein B|
           (NI-B) (NIB) (RNA-directed RNA polymerase) (EC
           2.7.7.48); Coat protein (CP)] (Fragment)
          Length = 675

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 418 FHWLRQGVPTSQSAKTARAP-AARMGLRGLEGSERG 314
           + W+ +  P ++ AK  RAP  + +GLR L  SERG
Sbjct: 305 YQWVLEQAPFNELAKQGRAPYVSEVGLRRLYTSERG 340

>POLG_PRSVH (Q01901) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3344

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 418  FHWLRQGVPTSQSAKTARAP-AARMGLRGLEGSERG 314
            + W+ +  P ++ AK  RAP  + +GLR L  SERG
Sbjct: 2974 YQWVLEQAPFNELAKQGRAPYVSEVGLRRLYTSERG 3009

>Y1115_HALSA (Q9HQK7) Hypothetical UPF0066 protein Vng1115h|
          Length = 124

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = -3

Query: 406 RQGVPTSQSAKTARAPAARMGLRGLEGSERGCFIHLSDPSDGE*ESAASSVRTSTTPPGP 227
           RQGV T  +A      + R GL GLE  +R   +  +D +D +  +     R   T   P
Sbjct: 21  RQGVETPYAANVQVYESFRGGLVGLEPDDRVVVVWWADDADRDVLAVRDGDRGVFTTRSP 80

Query: 226 ARTVP 212
           AR  P
Sbjct: 81  ARPNP 85

>LEU2_HALVO (Q7ZAG7) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 473

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 397 VPTSQSAKTARAPAARMGLRGLEGSERGCFIHLSDPSDGE 278
           VPTS  ++  R  AA   +  LE + R   I+ SDP+ GE
Sbjct: 66  VPTSDQSRPFRDDAAEEMMAELEQNVREAGINFSDPTSGE 105

>MAX_XENLA (Q07016) Protein max (Myc-associated factor X) (xMAX)|
          Length = 163

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -3

Query: 421 SFHWLRQGVPTSQSAKTARAPAARMGLRGLEGSERGCFIHLSDPSDGE*ESAASSVRTST 242
           SFH LR  VP+ Q  K +RA         ++   R    H  D  D + ++A    +   
Sbjct: 42  SFHGLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVQI 101

Query: 241 TPPGP 227
           + P P
Sbjct: 102 SNPKP 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,470,704
Number of Sequences: 219361
Number of extensions: 524641
Number of successful extensions: 2175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2174
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)