ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast78d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCMH_RHOCA (Q00501) Cytochrome c-type biogenesis protein ccl2 pr... 30 2.3
2AL3B1_MOUSE (Q80VQ0) Aldehyde dehydrogenase 3B1 (EC 1.2.1.5) (Al... 30 2.3
3L2GL_DROPS (Q08470) Protein lethal(2) giant larvae (P127) 30 4.0
4COAT_BYDVN (P27578) Coat protein 30 4.0
5NANH_MICVI (Q02834) Sialidase precursor (EC 3.2.1.18) (Neuramini... 28 8.9

>CCMH_RHOCA (Q00501) Cytochrome c-type biogenesis protein ccl2 precursor|
          Length = 149

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 26/69 (37%), Positives = 37/69 (53%)
 Frame = +2

Query: 173 RLASGDQLADVVYHEKGRVYCLTRYGDVHVLRLPERRRRKPIVVEDPAGPSEPVITLGSP 352
           RL +GD  A V+ + K R      +G+ +VL  PERR    I+     GP+  V+ LG  
Sbjct: 68  RLVAGDSDAQVIDYIKDR------FGE-YVLFEPERRGANLILYW--IGPAVLVVALGGI 118

Query: 353 ALSLQGRRQ 379
            L L+GRR+
Sbjct: 119 FLWLRGRRR 127



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>AL3B1_MOUSE (Q80VQ0) Aldehyde dehydrogenase 3B1 (EC 1.2.1.5) (Aldehyde|
           dehydrogenase 7)
          Length = 468

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 269 LPERRRRKPIVVEDPAGPSEPVITLGS--PALSLQGRRQRNLRMICYEHRRWREQQLPIA 442
           L + +  +P++ E+  GP  P++T+ S   A+    RR++ L +  +  R    +Q+   
Sbjct: 321 LVDVQETEPVMQEEIFGPILPLVTVRSLDEAIEFMNRREKPLALYAFSKRSQVIKQVLAR 380

Query: 443 TMKAAFC 463
           T    FC
Sbjct: 381 TSSGGFC 387



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>L2GL_DROPS (Q08470) Protein lethal(2) giant larvae (P127)|
          Length = 1166

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 206 VYHEKGRVYCLTRYGDVHVLRLPERRRR 289
           +YHE   + CLT  GD+ VL +PE +R+
Sbjct: 899 LYHEMALI-CLTNMGDIMVLSVPELKRQ 925



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>COAT_BYDVN (P27578) Coat protein|
          Length = 204

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 278 RRRRKPIVVEDPAGPSEPVITLGSPALSLQGRRQR 382
           RRRR+ +    PA  ++PV+ + S   + +GRR+R
Sbjct: 14  RRRRQRVARRRPAARTQPVVVVASNGPARRGRRRR 48



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>NANH_MICVI (Q02834) Sialidase precursor (EC 3.2.1.18) (Neuraminidase)|
          Length = 647

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +2

Query: 245 YGDVHVLR-LPERRRRKPIV---VEDPAGPSEPVITLGSPALSLQGRRQRNLRMICYEHR 412
           YG V + R LP+      I+    + PAG +   + L S A S   R Q  +RM C + +
Sbjct: 296 YGPVTIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQ 355

Query: 413 RW 418
            W
Sbjct: 356 TW 357


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,383,886
Number of Sequences: 219361
Number of extensions: 696193
Number of successful extensions: 1822
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1821
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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