ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast78d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472839.1| Oryza sativa (japonica cultivar-group), predic... 291 1e-75
2emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4,... 291 1e-75
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 291 1e-75
4ref|NM_184832.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.40
5ref|XM_584525.2| PREDICTED: Bos taurus similar to Anaphase promo... 44 0.40
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.40
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
8gb|AC120537.6| Oryza sativa chromosome 3 BAC OSJNBb0042N11 genom... 44 0.40
9dbj|AK111441.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
10gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 42 1.6
11gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
12gb|DQ372711.1| Azoarcus communis strain MUL2G9 hypothetical prot... 42 1.6
13gb|CP000088.1| Thermobifida fusca YX, complete genome 42 1.6
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
15dbj|AK111347.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
16gb|AC122431.4| Mus musculus BAC clone RP24-176L8 from 6, complet... 42 1.6
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
18ref|XM_470904.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
19ref|XM_466194.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
20ref|XM_450282.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
21gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
22gb|AC157598.4| Mus musculus BAC clone RP23-193D3 from chromosome... 40 6.3
23gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 6.3
24gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 6.3
25gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
26ref|XM_812736.1| Trypanosoma cruzi strain CL Brener heat shock p... 40 6.3
27ref|XM_969093.1| PREDICTED: Tribolium castaneum similar to CG324... 40 6.3
28emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.3
29emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.3
30gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, comple... 40 6.3
31gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 6.3
32gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 geno... 40 6.3
33dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 40 6.3
34gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.3
35gb|AC118134.3| Oryza sativa chromosome 3 BAC OSJNBb0041J20 genom... 40 6.3
36dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
37dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
38dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
39gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.3
40dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.3
41dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.3
42dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
43dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
44dbj|AP005872.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
45dbj|AP005553.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
46dbj|AK109915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
47gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 40 6.3
48dbj|AB096160.1| Cercopithecine herpesvirus 1 DNA, UL region, com... 40 6.3
49gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 6.3
50gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
51emb|AL672266.9| Mouse DNA sequence from clone RP23-342A10 on chr... 40 6.3 
>ref|XM_472839.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1449

 Score =  291 bits (147), Expect = 1e-75
 Identities = 252/287 (87%)
 Strand = Plus / Plus

                                                                       
Query: 5   acggagatccttctgccgccgctgatctacgagagccgttgggtctccaagctcgtcttc 64
           ||||||||| | || ||||| ||||||||||||||| | |||||||||||| |||| |||
Sbjct: 328 acggagatcgtcctcccgcccctgatctacgagagcaggtgggtctccaaggtcgtgttc 387

                                                                       
Query: 65  gcgcccaaccccgccagggacgacttcgccgccgccgccatctgcgacatcgacaggctc 124
           ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 388 gcgcccagccccgccaaggacgactacgccgccgccgccatctgcgacatcgacaggatc 447

                                                                       
Query: 125 gcctacgtcaccgcgggggccaggaggtgggccatcctcgatcccgtccgcctcgccagc 184
           ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| || |
Sbjct: 448 gcctacgtcaccgcgggcgccaggaggtgggccgtcctcgaccccgtccgcctcgtcacc 507

                                                                       
Query: 185 ggagatcagctcgccgacgttgtctaccatgaaaaaggtagggtctactgcctcactcgc 244
           || || |||||| ||||||| |||||||| || ||||||| |||||||||||||||  | 
Sbjct: 508 ggcgaccagctcaccgacgtcgtctaccacgacaaaggtaaggtctactgcctcacgagg 567

                                                          
Query: 245 tatggagatgtccacgtgctccgcctgccggagcgccgccgccggaa 291
           |  ||||| || ||| |||||||||| || |||||||| ||||||||
Sbjct: 568 tgcggagacgtgcacctgctccgcctccccgagcgccgtcgccggaa 614
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>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23,
             complete sequence
          Length = 130273

 Score =  291 bits (147), Expect = 1e-75
 Identities = 252/287 (87%)
 Strand = Plus / Minus

                                                                         
Query: 5     acggagatccttctgccgccgctgatctacgagagccgttgggtctccaagctcgtcttc 64
             ||||||||| | || ||||| ||||||||||||||| | |||||||||||| |||| |||
Sbjct: 49503 acggagatcgtcctcccgcccctgatctacgagagcaggtgggtctccaaggtcgtgttc 49444

                                                                         
Query: 65    gcgcccaaccccgccagggacgacttcgccgccgccgccatctgcgacatcgacaggctc 124
             ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 49443 gcgcccagccccgccaaggacgactacgccgccgccgccatctgcgacatcgacaggatc 49384

                                                                         
Query: 125   gcctacgtcaccgcgggggccaggaggtgggccatcctcgatcccgtccgcctcgccagc 184
             ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| || |
Sbjct: 49383 gcctacgtcaccgcgggcgccaggaggtgggccgtcctcgaccccgtccgcctcgtcacc 49324

                                                                         
Query: 185   ggagatcagctcgccgacgttgtctaccatgaaaaaggtagggtctactgcctcactcgc 244
             || || |||||| ||||||| |||||||| || ||||||| |||||||||||||||  | 
Sbjct: 49323 ggcgaccagctcaccgacgtcgtctaccacgacaaaggtaaggtctactgcctcacgagg 49264

                                                            
Query: 245   tatggagatgtccacgtgctccgcctgccggagcgccgccgccggaa 291
             |  ||||| || ||| |||||||||| || |||||||| ||||||||
Sbjct: 49263 tgcggagacgtgcacctgctccgcctccccgagcgccgtcgccggaa 49217
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  291 bits (147), Expect = 1e-75
 Identities = 252/287 (87%)
 Strand = Plus / Minus

                                                                            
Query: 5        acggagatccttctgccgccgctgatctacgagagccgttgggtctccaagctcgtcttc 64
                ||||||||| | || ||||| ||||||||||||||| | |||||||||||| |||| |||
Sbjct: 23606822 acggagatcgtcctcccgcccctgatctacgagagcaggtgggtctccaaggtcgtgttc 23606763

                                                                            
Query: 65       gcgcccaaccccgccagggacgacttcgccgccgccgccatctgcgacatcgacaggctc 124
                ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 23606762 gcgcccagccccgccaaggacgactacgccgccgccgccatctgcgacatcgacaggatc 23606703

                                                                            
Query: 125      gcctacgtcaccgcgggggccaggaggtgggccatcctcgatcccgtccgcctcgccagc 184
                ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| || |
Sbjct: 23606702 gcctacgtcaccgcgggcgccaggaggtgggccgtcctcgaccccgtccgcctcgtcacc 23606643

                                                                            
Query: 185      ggagatcagctcgccgacgttgtctaccatgaaaaaggtagggtctactgcctcactcgc 244
                || || |||||| ||||||| |||||||| || ||||||| |||||||||||||||  | 
Sbjct: 23606642 ggcgaccagctcaccgacgtcgtctaccacgacaaaggtaaggtctactgcctcacgagg 23606583

                                                               
Query: 245      tatggagatgtccacgtgctccgcctgccggagcgccgccgccggaa 291
                |  ||||| || ||| |||||||||| || |||||||| ||||||||
Sbjct: 23606582 tgcggagacgtgcacctgctccgcctccccgagcgccgtcgccggaa 23606536
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>ref|NM_184832.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1539

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 185 ggagatcagctcgccgacgttg 206
           ||||||||||||||||||||||
Sbjct: 588 ggagatcagctcgccgacgttg 567
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>ref|XM_584525.2| PREDICTED: Bos taurus similar to Anaphase promoting complex subunit
           2 (APC2) (Cyclosome subunit 2), transcript variant 1
           (LOC507841), mRNA
          Length = 2532

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 91  cgccgccgccgccatctgcgac 112
           ||||||||||||||||||||||
Sbjct: 34  cgccgccgccgccatctgcgac 13
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 185      ggagatcagctcgccgacgttg 206
                ||||||||||||||||||||||
Sbjct: 21891973 ggagatcagctcgccgacgttg 21891952



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 267      gcctgccggagcgccgccgc 286
                ||||||||||||||||||||
Sbjct: 16275116 gcctgccggagcgccgccgc 16275135
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 185      ggagatcagctcgccgacgttg 206
                ||||||||||||||||||||||
Sbjct: 21885002 ggagatcagctcgccgacgttg 21884981



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 267      gcctgccggagcgccgccgc 286
                ||||||||||||||||||||
Sbjct: 16268749 gcctgccggagcgccgccgc 16268768
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>gb|AC120537.6| Oryza sativa chromosome 3 BAC OSJNBb0042N11 genomic sequence, complete
              sequence
          Length = 127210

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 185    ggagatcagctcgccgacgttg 206
              ||||||||||||||||||||||
Sbjct: 117043 ggagatcagctcgccgacgttg 117064
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>dbj|AK111441.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-A07, full
           insert sequence
          Length = 2154

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 185 ggagatcagctcgccgacgttg 206
           ||||||||||||||||||||||
Sbjct: 888 ggagatcagctcgccgacgttg 867
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 86      gacttcgccgccgccgccatc 106
               |||||||||||||||||||||
Sbjct: 1589267 gacttcgccgccgccgccatc 1589287



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    cctcgatcccgtccgcctcg 179
              ||||||||||||||||||||
Sbjct: 139470 cctcgatcccgtccgcctcg 139489
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>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0038B22, complete sequence
          Length = 177557

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 83    gacgacttcgccgccgccgcc 103
             |||||||||||||||||||||
Sbjct: 71958 gacgacttcgccgccgccgcc 71978
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>gb|DQ372711.1| Azoarcus communis strain MUL2G9 hypothetical proteins,
             phosphoribosylglycinamide formyltransferase, hypothetical
             protein, sigma-54 dependent transcriptional activator,
             acyl-CoA synthetase, acetone carboxylase gamma subunit,
             acetone carboxylase alpha subunit, acetone carboxylase
             beta subunit, catalase/peroxidase, putative SAM-dependent
             methyltransferase, putative Fe-S oxidoreductase, putative
             acyl dehydratase, hypothetical proteins, putative
             endonuclease, hypothetical protein, and putative
             integrase/recombinase genes, complete cds; class 1
             integron, complete sequence; putative transposase and DNA
             gyrase subunit B genes, complete cds; and DNA polymerase
             subunit B gene, partial cds
          Length = 36164

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 278   cgccgccgccggaagcctatc 298
             |||||||||||||||||||||
Sbjct: 12349 cgccgccgccggaagcctatc 12329
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 265     ccgcctgccggagcgccgccg 285
               |||||||||||||||||||||
Sbjct: 2848554 ccgcctgccggagcgccgccg 2848534
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 83       gacgacttcgccgccgccgcc 103
                |||||||||||||||||||||
Sbjct: 19894891 gacgacttcgccgccgccgcc 19894911



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 273      cggagcgccgccgccggaag 292
                ||||||||||||||||||||
Sbjct: 18257319 cggagcgccgccgccggaag 18257338
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>dbj|AK111347.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-G03, full
           insert sequence
          Length = 678

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 83  gacgacttcgccgccgccgcc 103
           |||||||||||||||||||||
Sbjct: 115 gacgacttcgccgccgccgcc 95
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>gb|AC122431.4| Mus musculus BAC clone RP24-176L8 from 6, complete sequence
          Length = 156005

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 358   cagtcttcagggaagaagacagcgcaact 386
             ||||||||||||||||| ||||| |||||
Sbjct: 43256 cagtcttcagggaagaaaacagctcaact 43284
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 83       gacgacttcgccgccgccgcc 103
                |||||||||||||||||||||
Sbjct: 20179870 gacgacttcgccgccgccgcc 20179890



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 273      cggagcgccgccgccggaag 292
                ||||||||||||||||||||
Sbjct: 18416599 cggagcgccgccgccggaag 18416618
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>ref|XM_470904.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 333

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 gcctgccggagcgccgccgc 286
           ||||||||||||||||||||
Sbjct: 172 gcctgccggagcgccgccgc 153
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>ref|XM_466194.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 702

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 77  gccagggacgacttcgccgccgccgcca 104
           ||||| |||||| |||||||||||||||
Sbjct: 92  gccagcgacgacgtcgccgccgccgcca 65
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>ref|XM_450282.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 858

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 90  tcgccgccgccgccatctgcgaca 113
           ||||||||||||||||| ||||||
Sbjct: 520 tcgccgccgccgccatcggcgaca 497
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>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08,
              complete sequence
          Length = 136853

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    cggagcgccgccgccggaag 292
              ||||||||||||||||||||
Sbjct: 115915 cggagcgccgccgccggaag 115934
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>gb|AC157598.4| Mus musculus BAC clone RP23-193D3 from chromosome 17, complete sequence
          Length = 222399

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     agatccttctgccgccgctg 28
             ||||||||||||||||||||
Sbjct: 43359 agatccttctgccgccgctg 43340
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 296    atcgtcgtcgaggatccagc 315
              ||||||||||||||||||||
Sbjct: 963429 atcgtcgtcgaggatccagc 963410
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 296     atcgtcgtcgaggatccagc 315
               ||||||||||||||||||||
Sbjct: 2005230 atcgtcgtcgaggatccagc 2005211
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>gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0410D09,
             complete sequence
          Length = 43883

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   cggagcgccgccgccggaag 292
             ||||||||||||||||||||
Sbjct: 24578 cggagcgccgccgccggaag 24597
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>ref|XM_812736.1| Trypanosoma cruzi strain CL Brener heat shock protein DnaJ
           (Tc00.1047053509233.80) partial mRNA
          Length = 1185

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 85  cgacttcgccgccgccgcca 104
           ||||||||||||||||||||
Sbjct: 129 cgacttcgccgccgccgcca 110
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>ref|XM_969093.1| PREDICTED: Tribolium castaneum similar to CG32432-PA (LOC663028),
            mRNA
          Length = 3108

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 79   cagggacgacttcgccgccgccgc 102
            |||||||| |||||||||||||||
Sbjct: 1045 cagggacggcttcgccgccgccgc 1022
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 84      acgacttcgccgccgccgcc 103
               ||||||||||||||||||||
Sbjct: 1349886 acgacttcgccgccgccgcc 1349867
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 296     atcgtcgtcgaggatccagc 315
               ||||||||||||||||||||
Sbjct: 2371537 atcgtcgtcgaggatccagc 2371556
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>gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, complete genome
          Length = 156789

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   ccgcctcgccagcggagatc 191
             ||||||||||||||||||||
Sbjct: 46813 ccgcctcgccagcggagatc 46832
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 83      gacgacttcgccgccgccgc 102
               ||||||||||||||||||||
Sbjct: 1317657 gacgacttcgccgccgccgc 1317638
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>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete
             sequence
          Length = 178692

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 90    tcgccgccgccgccatctgcgaca 113
             ||||||||||||||||| ||||||
Sbjct: 69297 tcgccgccgccgccatcggcgaca 69274
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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 416    tggagggagcagcagctccc 435
              ||||||||||||||||||||
Sbjct: 294226 tggagggagcagcagctccc 294207
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 84      acgacttcgccgccgccgcc 103
               ||||||||||||||||||||
Sbjct: 1700014 acgacttcgccgccgccgcc 1700033
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>gb|AC118134.3| Oryza sativa chromosome 3 BAC OSJNBb0041J20 genomic sequence, complete
             sequence
          Length = 135585

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   gcctgccggagcgccgccgc 286
             ||||||||||||||||||||
Sbjct: 73132 gcctgccggagcgccgccgc 73151
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 90       tcgccgccgccgccatctgcgaca 113
                ||||||||||||||||| ||||||
Sbjct: 17605334 tcgccgccgccgccatcggcgaca 17605357
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 90       tcgccgccgccgccatctgcgaca 113
                ||||||||||||||||| ||||||
Sbjct: 12319157 tcgccgccgccgccatcggcgaca 12319134



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 90      tcgccgccgccgccatctgcgaca 113
               ||||||||||||||||| ||||||
Sbjct: 3782702 tcgccgccgccgccatcggcgaca 3782725
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 77       gccagggacgacttcgccgccgccgcca 104
                ||||| |||||| |||||||||||||||
Sbjct: 20974803 gccagcgacgacgtcgccgccgccgcca 20974776
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 263     ctccgcctgccggagcgccgccgc 286
               |||||||||||||||||| |||||
Sbjct: 2399401 ctccgcctgccggagcgcggccgc 2399424
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 91      cgccgccgccgccatctgcg 110
               ||||||||||||||||||||
Sbjct: 2806201 cgccgccgccgccatctgcg 2806182
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 89      ttcgccgccgccgccatctg 108
               ||||||||||||||||||||
Sbjct: 4620638 ttcgccgccgccgccatctg 4620619
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>dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1080A02
          Length = 151360

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    tcgccgccgccgccatctgcgaca 113
             ||||||||||||||||| ||||||
Sbjct: 22218 tcgccgccgccgccatcggcgaca 22241
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>dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0470G10
          Length = 145419

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 77    gccagggacgacttcgccgccgccgcca 104
             ||||| |||||| |||||||||||||||
Sbjct: 98275 gccagcgacgacgtcgccgccgccgcca 98248
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>dbj|AP005872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1168F12
          Length = 141524

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 90     tcgccgccgccgccatctgcgaca 113
              ||||||||||||||||| ||||||
Sbjct: 102711 tcgccgccgccgccatcggcgaca 102688
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>dbj|AP005553.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1116_H10
          Length = 101054

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    tcgccgccgccgccatctgcgaca 113
             ||||||||||||||||| ||||||
Sbjct: 90004 tcgccgccgccgccatcggcgaca 90027
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>dbj|AK109915.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-C06, full
            insert sequence
          Length = 1961

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  cggagcgccgccgccggaag 292
            ||||||||||||||||||||
Sbjct: 1076 cggagcgccgccgccggaag 1095
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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 267     gcctgccggagcgccgccgc 286
               ||||||||||||||||||||
Sbjct: 1428903 gcctgccggagcgccgccgc 1428922
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>dbj|AB096160.1| Cercopithecine herpesvirus 1 DNA, UL region, complete sequence
          Length = 106873

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   ccgcctcgccagcggagatc 191
             ||||||||||||||||||||
Sbjct: 37784 ccgcctcgccagcggagatc 37803
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 265    ccgcctgccggagcgccgccgccg 288
              |||||||||| |||||||||||||
Sbjct: 215728 ccgcctgccgcagcgccgccgccg 215751
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 90       tcgccgccgccgccatctgcgaca 113
                ||||||||||||||||| ||||||
Sbjct: 17614374 tcgccgccgccgccatcggcgaca 17614397
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>emb|AL672266.9| Mouse DNA sequence from clone RP23-342A10 on chromosome X, complete
            sequence
          Length = 216754

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  ctgctatgaacatcgtagatggag 420
            ||||||||||||| ||||||||||
Sbjct: 4313 ctgctatgaacatagtagatggag 4290


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,212,304
Number of Sequences: 3902068
Number of extensions: 4212304
Number of successful extensions: 121411
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117428
Number of HSP's gapped (non-prelim): 3983
length of query: 468
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 446
effective length of database: 17,147,199,772
effective search space: 7647651098312
effective search space used: 7647651098312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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