ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast78d10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466392.1| Oryza sativa (japonica cultivar-group), mRNA 68 3e-08
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
3dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
4dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
5dbj|AK109600.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
6gb|BT016428.1| Zea mays clone Contig261 mRNA sequence 58 3e-05
7ref|XM_472738.1| Oryza sativa (japonica cultivar-group), predic... 48 0.026
8emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4,... 48 0.026
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
10dbj|AK104444.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.026
11dbj|AK059553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.026
12emb|AL732493.17| Mouse DNA sequence from clone RP23-358F6 on chr... 42 1.6
13ref|XM_472739.1| Oryza sativa (japonica cultivar-group), predic... 40 6.5
14gb|AF357202.1| Streptomyces nodosus amphotericin biosynthetic ge... 40 6.5
15gb|AC135116.2| Mus musculus BAC clone RP24-316A1 from chromosome... 40 6.5
16ref|XM_538388.2| PREDICTED: Canis familiaris similar to CDC42 ef... 40 6.5
17gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.5
18dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
19gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.5
20dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
21dbj|AK106058.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
22emb|CR974479.17| Pig DNA sequence from clone PigE-150P18 on chro... 40 6.5
23gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 6.5 
>ref|XM_466392.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1299

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 384 aagaagggggatttctccatcaaggtcaccaactgggg 421
           |||||||||||||||||||||| |||||||||||||||
Sbjct: 156 aagaagggggatttctccatcagggtcaccaactgggg 193
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                      
Query: 384      aagaagggggatttctccatcaaggtcaccaactgggg 421
                |||||||||||||||||||||| |||||||||||||||
Sbjct: 22122036 aagaagggggatttctccatcagggtcaccaactgggg 22122073
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>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0703B01
          Length = 137445

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                   
Query: 384   aagaagggggatttctccatcaaggtcaccaactgggg 421
             |||||||||||||||||||||| |||||||||||||||
Sbjct: 95935 aagaagggggatttctccatcagggtcaccaactgggg 95972
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>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1342F01
          Length = 153287

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                   
Query: 384   aagaagggggatttctccatcaaggtcaccaactgggg 421
             |||||||||||||||||||||| |||||||||||||||
Sbjct: 17880 aagaagggggatttctccatcagggtcaccaactgggg 17917
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>dbj|AK109600.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-E04, full
           insert sequence
          Length = 1324

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 384 aagaagggggatttctccatcaaggtcaccaactgggg 421
           |||||||||||||||||||||| |||||||||||||||
Sbjct: 156 aagaagggggatttctccatcagggtcaccaactgggg 193
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>gb|BT016428.1| Zea mays clone Contig261 mRNA sequence
          Length = 1373

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 389 gggggatttctccatcaaggtcaccaactgggg 421
           ||||||||||||| |||||||||||||||||||
Sbjct: 125 gggggatttctccgtcaaggtcaccaactgggg 157
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>ref|XM_472738.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1206

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 386 gaagggggatttctccatcaaggtcaccaactgggg 421
           |||||| ||||||||||||| ||||||||| |||||
Sbjct: 123 gaagggagatttctccatcagggtcaccaattgggg 158
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>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21,
             complete sequence
          Length = 138969

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 386   gaagggggatttctccatcaaggtcaccaactgggg 421
             |||||| ||||||||||||| ||||||||| |||||
Sbjct: 77451 gaagggagatttctccatcagggtcaccaattgggg 77486



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 386   gaagggggatttctccatcaaggtcaccaactgggg 421
             ||||||||| |||||| | ||| |||||||||||||
Sbjct: 86184 gaagggggacttctccgtgaagatcaccaactgggg 86219
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 386      gaagggggatttctccatcaaggtcaccaactgggg 421
                |||||| ||||||||||||| ||||||||| |||||
Sbjct: 22868676 gaagggagatttctccatcagggtcaccaattgggg 22868711



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 386      gaagggggatttctccatcaaggtcaccaactgggg 421
                ||||||||| |||||| | ||| |||||||||||||
Sbjct: 22877409 gaagggggacttctccgtgaagatcaccaactgggg 22877444
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>dbj|AK104444.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H06, full
           insert sequence
          Length = 1285

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 386 gaagggggatttctccatcaaggtcaccaactgggg 421
           |||||| ||||||||||||| ||||||||| |||||
Sbjct: 152 gaagggagatttctccatcagggtcaccaattgggg 187
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>dbj|AK059553.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G05, full
           insert sequence
          Length = 1329

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 386 gaagggggatttctccatcaaggtcaccaactgggg 421
           |||||| ||||||||||||| ||||||||| |||||
Sbjct: 176 gaagggagatttctccatcagggtcaccaattgggg 211
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>emb|AL732493.17| Mouse DNA sequence from clone RP23-358F6 on chromosome 2, complete
             sequence
          Length = 195388

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 230   ctgctattagtagtgctgtgc 250
             |||||||||||||||||||||
Sbjct: 12828 ctgctattagtagtgctgtgc 12808
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>ref|XM_472739.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1092

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 386 gaagggggatttctccatcaaggtcaccaactgggg 421
           ||||||||| |||||| | ||| |||||||||||||
Sbjct: 114 gaagggggacttctccgtgaagatcaccaactgggg 149
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>gb|AF357202.1| Streptomyces nodosus amphotericin biosynthetic gene cluster, complete
             sequence
          Length = 113193

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 169   cgagcgcaccgccggcgccctccc 192
             ||||||||||||||||||| ||||
Sbjct: 11662 cgagcgcaccgccggcgccgtccc 11685



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 60    cgagcgcaccgccggcgccctccc 83
             ||||||||||||||||||| ||||
Sbjct: 11662 cgagcgcaccgccggcgccgtccc 11685
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>gb|AC135116.2| Mus musculus BAC clone RP24-316A1 from chromosome 5, complete sequence
          Length = 138444

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   caagaagggggatttctcca 402
             ||||||||||||||||||||
Sbjct: 81086 caagaagggggatttctcca 81067
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>ref|XM_538388.2| PREDICTED: Canis familiaris similar to CDC42 effector protein (Rho
           GTPase binding) 1 (LOC481267), mRNA
          Length = 496

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 177 ccgccggcgccctcccctgc 196
           ||||||||||||||||||||
Sbjct: 305 ccgccggcgccctcccctgc 324



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  ccgccggcgccctcccctgc 87
           ||||||||||||||||||||
Sbjct: 305 ccgccggcgccctcccctgc 324
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 54      gcccatcgagcgcaccgccg 73
               ||||||||||||||||||||
Sbjct: 4530659 gcccatcgagcgcaccgccg 4530678



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 163     gcccatcgagcgcaccgccg 182
               ||||||||||||||||||||
Sbjct: 4530659 gcccatcgagcgcaccgccg 4530678
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 224     accactctgctattagtagt 243
               ||||||||||||||||||||
Sbjct: 2795219 accactctgctattagtagt 2795200
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 160     cgcgcccatcgagcgcaccg 179
               ||||||||||||||||||||
Sbjct: 3631325 cgcgcccatcgagcgcaccg 3631344



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 51      cgcgcccatcgagcgcaccg 70
               ||||||||||||||||||||
Sbjct: 3631325 cgcgcccatcgagcgcaccg 3631344
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>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1364A02
          Length = 137933

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   accactctgctattagtagt 243
             ||||||||||||||||||||
Sbjct: 98780 accactctgctattagtagt 98761
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>dbj|AK106058.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F10, full
           insert sequence
          Length = 1343

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 386 gaagggggatttctccatcaaggtcaccaactgggg 421
           ||||||||| |||||| | ||| |||||||||||||
Sbjct: 177 gaagggggacttctccgtgaagatcaccaactgggg 212
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>emb|CR974479.17| Pig DNA sequence from clone PigE-150P18 on chromosome 7, complete
             sequence
          Length = 152730

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    caccgccggcgccctcccct 85
             ||||||||||||||||||||
Sbjct: 77269 caccgccggcgccctcccct 77288



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   caccgccggcgccctcccct 194
             ||||||||||||||||||||
Sbjct: 77269 caccgccggcgccctcccct 77288
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     cgcgcaacccggcgacgaac 47
              ||||||||||||||||||||
Sbjct: 797988 cgcgcaacccggcgacgaac 797969


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,091,529
Number of Sequences: 3902068
Number of extensions: 3091529
Number of successful extensions: 59695
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59214
Number of HSP's gapped (non-prelim): 481
length of query: 478
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 456
effective length of database: 17,147,199,772
effective search space: 7819123096032
effective search space used: 7819123096032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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