ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast78d09 |
|---|---|
| Clone Library Name | barley_pub |
>P3_MOUSE (P21129) P3 protein (Solute carrier family 10 member 3)| Length = 473 Score = 33.9 bits (76), Expect = 0.22 Identities = 21/43 (48%), Positives = 24/43 (55%) Frame = +1 Query: 253 GIPPLSSLHYQYKLSIHDDRHDPISENKYLLTIIIRVGPIDIG 381 G PLSS Y Y LSIH+ H PIS K L T++ PI G Sbjct: 293 GFLPLSSAIYSYLLSIHETLHVPIS--KILGTLLFIAIPIAAG 333
>SYD_BURTA (Q2T132) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 600 Score = 32.3 bits (72), Expect = 0.65 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = -3 Query: 234 GSLKKHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRP 106 G + +H +G+ + Q RR HG +I I+ DRE L Q+ C P Sbjct: 9 GLVTEHLLGQTVSLCGWVQRRRDHGGVIFIDLRDREGLVQVVCDP 53
>SYD_BURS3 (Q39D20) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 600 Score = 32.3 bits (72), Expect = 0.65 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = -3 Query: 234 GSLKKHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRP 106 G + +H +G+ + Q RR HG +I I+ DRE L Q+ C P Sbjct: 9 GLVTEHLLGQTVSLCGWVQRRRDHGGVIFIDLRDREGLVQVVCDP 53
>P3_HUMAN (P09131) P3 protein (Solute carrier family 10 member 3)| Length = 477 Score = 32.0 bits (71), Expect = 0.85 Identities = 20/43 (46%), Positives = 24/43 (55%) Frame = +1 Query: 253 GIPPLSSLHYQYKLSIHDDRHDPISENKYLLTIIIRVGPIDIG 381 G PLSS Y LSIH+ H PIS K L T++ PI +G Sbjct: 297 GFLPLSSAIYSRLLSIHETLHVPIS--KILGTLLFIAIPIAVG 337
>PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (EC 2.7.11.1)| (Phytosulfokine LRR receptor kinase) Length = 1008 Score = 31.6 bits (70), Expect = 1.1 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Frame = +1 Query: 133 LTIMAVDFNDFAMSAPMLEGFIDQFPDLVLFQASTNNFGGGIPPLSSLHYQYKLSIHDDR 312 L + V +N F+ P + D+ P L F TN F GGIP SL L++ + R Sbjct: 246 LVRLDVSWNLFSGEIPDV---FDELPQLKFFLGQTNGFIGGIP--KSLANSPSLNLLNLR 300 Query: 313 HDPISENKYL-LTIIIRVGPIDIG 381 ++ +S L T +I + +D+G Sbjct: 301 NNSLSGRLMLNCTAMIALNSLDLG 324
>SYD_BURPS (Q63X93) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 598 Score = 30.4 bits (67), Expect = 2.5 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -3 Query: 234 GSLKKHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRP 106 G + +H +G+ + RR HG +I I+ DRE L Q+ C P Sbjct: 7 GLVTEHLLGQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDP 51
>SYD_BURP1 (Q3JVY8) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 598 Score = 30.4 bits (67), Expect = 2.5 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -3 Query: 234 GSLKKHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRP 106 G + +H +G+ + RR HG +I I+ DRE L Q+ C P Sbjct: 7 GLVTEHLLGQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDP 51
>SYD_BURMA (Q62MP0) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 598 Score = 30.4 bits (67), Expect = 2.5 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -3 Query: 234 GSLKKHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRP 106 G + +H +G+ + RR HG +I I+ DRE L Q+ C P Sbjct: 7 GLVTEHLLGQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDP 51
>SYD_GEOSL (Q74D56) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 594 Score = 30.4 bits (67), Expect = 2.5 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = -3 Query: 234 GSLKKHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRPATEPK 91 G+L K +G+ + RR HG +I I+ DRE L+QI PA P+ Sbjct: 15 GTLTKADVGKQVTLMGWVMRRRDHGGLIFIDLRDREGLAQIVFDPAKAPE 64
>PECA1_BOVIN (P51866) Platelet endothelial cell adhesion molecule precursor| (PECAM-1) (CD31 antigen) Length = 739 Score = 30.0 bits (66), Expect = 3.2 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = +1 Query: 277 HYQYKLSIHDDRHDPISENKYLLTIIIRVGPIDIGEPEAVVQTARKGT 420 HY Y + + P++ENK LT+ + +++ PE KGT Sbjct: 661 HYGYNEDVGNHAMKPLNENKEPLTLDVEYTEVEVTSPEPHQGLGTKGT 708
>HOG3_HORVU (P80198) Gamma-hordein-3| Length = 289 Score = 30.0 bits (66), Expect = 3.2 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +3 Query: 249 RRYPAPQQPSLPVQAKYPRRPP*SNFREQV 338 ++ P PQQP LP Q ++P++ P F +Q+ Sbjct: 51 QQQPFPQQPQLPHQHQFPQQLPQQQFPQQM 80
>SYD_RALEJ (Q475W2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 602 Score = 30.0 bits (66), Expect = 3.2 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -3 Query: 186 QHRRTHGKIIEINRHDRELLSQIRCRP 106 Q RR HG +I I+ DRE L Q+ C P Sbjct: 28 QRRRDHGGVIFIDLRDREGLVQVVCDP 54
>PECA1_PIG (Q95242) Platelet endothelial cell adhesion molecule precursor| (PECAM-1) (CD31 antigen) Length = 740 Score = 29.6 bits (65), Expect = 4.2 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = +1 Query: 277 HYQYKLSIHDDRHDPISENKYLLTIIIRVGPIDIGEPEAVVQTARKGT 420 HY Y + + P++ENK LT+ + +++ PE KGT Sbjct: 664 HYGYNEDVGNHAMKPLNENKEPLTLDVEYTEVEVTSPEPHRGLGTKGT 711
>CH60_THET8 (Q5SLM2) 60 kDa chaperonin (Protein Cpn60) (groEL protein) (Heat| shock protein 60) Length = 542 Score = 29.6 bits (65), Expect = 4.2 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = -3 Query: 165 KIIEINRHDRELLSQIRCRPATEPKVGFPAADVMARPGPGDVFRVTRNSALE 10 K + I DR+ + ++ A +P+VG AD M + G + V + +LE Sbjct: 130 KALAIPVEDRKAIEEVATISANDPEVGKLIADAMEKVGKEGIITVEESKSLE 181
>CH60_THET2 (P61490) 60 kDa chaperonin (Protein Cpn60) (groEL protein) (Heat| shock protein 60) Length = 542 Score = 29.6 bits (65), Expect = 4.2 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = -3 Query: 165 KIIEINRHDRELLSQIRCRPATEPKVGFPAADVMARPGPGDVFRVTRNSALE 10 K + I DR+ + ++ A +P+VG AD M + G + V + +LE Sbjct: 130 KALAIPVEDRKAIEEVATISANDPEVGKLIADAMEKVGKEGIITVEESKSLE 181
>SYD_CHLPN (Q9Z7P2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 584 Score = 29.3 bits (64), Expect = 5.5 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = -3 Query: 228 LKKHKIGELIDEA-FQHR-RTHGKIIEINRHDRELLSQIRCRPATEPKV 88 L + IGE + A + HR R HG ++ I+ DR ++QI CR +P++ Sbjct: 11 LTSNHIGENVQLAGWVHRYRNHGGVVFIDLRDRFGITQIVCREDEQPEL 59
>PYS2_PSEAE (Q06584) Pyocin-S2 (EC 3.1.-.-) (Killer protein)| Length = 688 Score = 29.3 bits (64), Expect = 5.5 Identities = 19/59 (32%), Positives = 28/59 (47%) Frame = +1 Query: 121 LAKKLTIMAVDFNDFAMSAPMLEGFIDQFPDLVLFQASTNNFGGGIPPLSSLHYQYKLS 297 LA ++MAV F S+ E + DQ PD V + + G+PP +L+ K S Sbjct: 363 LASAPSVMAVGFASLTYSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSVNLNAVAKAS 421
>SYD_DECAR (Q47IE0) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 599 Score = 29.3 bits (64), Expect = 5.5 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -3 Query: 180 RRTHGKIIEINRHDRELLSQIRCRP 106 RR HG +I I+ DRE L+Q+ C P Sbjct: 27 RRDHGGVIFIDLRDREGLAQVVCDP 51
>PYS1_PSEAE (Q06583) Pyocin-S1 (EC 3.1.-.-) (Killer protein)| Length = 617 Score = 29.3 bits (64), Expect = 5.5 Identities = 19/59 (32%), Positives = 28/59 (47%) Frame = +1 Query: 121 LAKKLTIMAVDFNDFAMSAPMLEGFIDQFPDLVLFQASTNNFGGGIPPLSSLHYQYKLS 297 LA ++MAV F S+ E + DQ PD V + + G+PP +L+ K S Sbjct: 292 LASAPSVMAVGFASLTYSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSVNLNAVAKAS 350
>TLR11_MOUSE (Q6R5P0) Toll-like receptor 11 precursor| Length = 926 Score = 28.9 bits (63), Expect = 7.2 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +1 Query: 205 FPDLVLFQASTNNFGGGIPPLSSLHYQYKLSI 300 FPDL+L +ST N G P L +L Y L + Sbjct: 199 FPDLLLSTSSTPNIKPGAPFLETLDLSYNLQL 230
>SYD_COXBU (Q83BE5) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 590 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -3 Query: 180 RRTHGKIIEINRHDRELLSQIRCRP 106 RR HG +I I+ DRE L Q+ C P Sbjct: 27 RRDHGGLIFIDLRDREGLVQVVCNP 51
>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 28.5 bits (62), Expect = 9.4 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Frame = +3 Query: 165 CHECADAGRLHRSVPRSCAFSGFHQ*FWRRYPAPQQ--PSLPVQAK------YPRRPP*S 320 C CA L SC+ G +W P P P P +A+ +P RP S Sbjct: 1168 CRHCASLELLPPPRHLSCSHDGLDGGWWAPPPPPWAAGPPAPRRARCGCPRPHPHRPRAS 1227 Query: 321 NFREQVSPHHN 353 + +PHH+ Sbjct: 1228 HRAPAAAPHHH 1238
>ARGC_METMA (Q8PZL6) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 340 Score = 28.5 bits (62), Expect = 9.4 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 8/48 (16%) Frame = +1 Query: 211 DLVLFQASTNNFGGGIPPLSSLHY--------QYKLSIHDDRHDPISE 330 D+ +F + T G GI P + HY YKL+ H R + + E Sbjct: 167 DIAVFDSKTGISGAGISPTETSHYPNLAENIVPYKLTAHRHRAEIVQE 214
>HIS8_BACTN (Q8ABA8) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 346 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = +1 Query: 133 LTIMAVDFNDFAMSAPMLEGFIDQFPDLVLFQASTNNFG 249 L I+ +NDF+ + LE +D++P+LV+FQ + +G Sbjct: 172 LVILDEAYNDFSEAPSFLEE-LDKYPNLVVFQTFSKAWG 209
>DBX1_MOUSE (P52950) Homeobox protein DBX1| Length = 335 Score = 28.5 bits (62), Expect = 9.4 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = -3 Query: 189 FQHRRTHGKIIEINRHDRELLSQIRCRPATEPKVGFPAADV--MARPGPGD 43 FQ+RR + N +RELLS CR T P P D+ + + GPGD Sbjct: 229 FQNRRMKWR----NSKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGD 275 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,439,161 Number of Sequences: 219361 Number of extensions: 1580875 Number of successful extensions: 4456 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4291 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4456 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
