ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast78d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UL35_HCMVA (P16766) Protein UL35 31 1.2
2LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain... 28 8.1

>UL35_HCMVA (P16766) Protein UL35|
          Length = 640

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 250 AAASVHHRPHLQRRPVHPARRGPHHQR 330
           + A  HHR H +RR   PA RGP H R
Sbjct: 584 SVAYSHHRRHRRRRSPPPAPRGPAHTR 610



to top

>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)|
          Length = 624

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 247 PAAASVHHRPHLQRRPVHPARRGPHH 324
           P   S HH  H +RR     RRG HH
Sbjct: 505 PRTPSCHHHHHHRRRRQRHRRRGSHH 530


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,318,301
Number of Sequences: 219361
Number of extensions: 259761
Number of successful extensions: 1066
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top