>MURD_SALCH (Q57TD2) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 438

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 278 GSGCSARTPPCTRCLVAVKLLMYCYGRTSKQL 373
           G G SA   P TR L   ++ +YC+GR   QL
Sbjct: 346 GDGKSADFSPLTRYLTGDRIRLYCFGRDGAQL 377

>MURD_SALTY (Q8ZRU4) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 437

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 278 GSGCSARTPPCTRCLVAVKLLMYCYGRTSKQL 373
           G G SA   P TR L   ++ +YC+GR   QL
Sbjct: 345 GDGKSADFSPLTRYLTGDRIRLYCFGRDGAQL 376

>FOXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription factor FKH-4)|
          Length = 428

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 389 PPITTAVVYLSFHNSTSAVLPPPSTLCTEVSSPSS 285
           PP+TT    LS   + S  LP PST+C   +SP++
Sbjct: 370 PPVTTLPPALSVPTA-SQQLPAPSTVCAAAASPTA 403

>MURD_SALPA (Q5PDC2) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 438

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 278 GSGCSARTPPCTRCLVAVKLLMYCYGRTSKQL 373
           G G SA   P  R L   ++ +YC+GR   QL
Sbjct: 346 GDGKSADFSPLARYLTGDRIRLYCFGRDGAQL 377

>MURD_SALTI (Q8Z9H0) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 437

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 278 GSGCSARTPPCTRCLVAVKLLMYCYGRTSKQL 373
           G G SA   P  R L   ++ +YC+GR   QL
Sbjct: 345 GDGKSADFSPLARYLTGDRIRLYCFGRDGAQL 376

>MURD_PHOLL (Q7N145) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 436

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 278 GSGCSARTPPCTRCLVAVKLLMYCYGRTSKQL 373
           G G SA   P    L   K+ +YC+GR  KQL
Sbjct: 344 GDGKSADFSPLKPFLCGNKVQLYCFGRDGKQL 375

>MYO1_SCHPO (Q9Y7Z8) Myosin-1|
          Length = 1217

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 386  PITTAVVYLSFHNSTSAVLPPPSTLCTEVSSPSSLN 279
            P+T+    +    + SA  P PST+ +  SSPS+++
Sbjct: 1043 PVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNIS 1078

>E41L1_HUMAN (Q9H4G0) Band 4.1-like protein 1 (Neuronal protein 4.1) (4.1N)|
          Length = 881

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = -2

Query: 389 PPITTAVVYLSFHNS------TSAVLPPPSTLCTEVSSPSSLNPRDL 267
           P ITT  +  +  NS       +A++P P T+ TE+ S S +  +D+
Sbjct: 745 PSITTETISTTMENSLKSGKGAAAMIPGPQTVATEIRSLSPIIGKDV 791

>ZMYM6_HUMAN (O95789) Zinc finger MYM-type protein 6 (Zinc finger protein 258)|
          Length = 723

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 353 HNSTSAVLPPPSTLCTEVSSPSSLNPRDL 267
           H+S + + PPP   CT  S    LNP+D+
Sbjct: 124 HSSPACLPPPPKKTCTNCSK-DILNPKDV 151

>TOP1_ARCFU (O28469) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 663

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 365 YLSFHNSTSAVLPPPSTLCTEVSSPSSLNPRDLTVV 258
           Y+S+  + + V PP   L   VS+ SS+ PR+  +V
Sbjct: 303 YISYPRTDNTVYPPTINLIEIVSALSSVFPREAQIV 338

>E41L1_MOUSE (Q9Z2H5) Band 4.1-like protein 1 (Neuronal protein 4.1) (4.1N)|
          Length = 879

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = -2

Query: 389 PPITTAVVYLSFHNS------TSAVLPPPSTLCTEVSSPSSLNPRDL 267
           P ITT  +  +  NS       +A++P P T+ TE+ S S +  +D+
Sbjct: 743 PCITTETISTTMENSLKSGKGAAAMIPGPQTVATEIRSLSPIIGKDV 789


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,107,522
Number of Sequences: 219361
Number of extensions: 550633
Number of successful extensions: 2129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2129
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)