>gb|DQ244055.1| Hordeum vulgare reticulon mRNA, complete cds
          Length = 615

 Score =  176 bits (89), Expect = 3e-41
 Identities = 95/97 (97%)
 Strand = Plus / Plus

                                                                       
Query: 294 cgaggacacctccgtgcacaaggtgcttggtggcggtaaaactgctgatgtactgttatg 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15  cgaggacacctccgtgcacaaggtgcttggtggcggtaaaactgctgatgtactgttatg 74

                                                
Query: 354 gaaggacaagtaaacaactgctgtggtgatcggtggc 390
           |||| ||||| ||||||||||||||||||||||||||
Sbjct: 75  gaagaacaagaaaacaactgctgtggtgatcggtggc 111



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 112 atggccgatccagccgagga 131
           ||||||||||||||||||||
Sbjct: 1   atggccgatccagccgagga 20

>dbj|AK073583.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051P18, full
           insert sequence
          Length = 1147

 Score =  129 bits (65), Expect = 7e-27
 Identities = 101/113 (89%)
 Strand = Plus / Plus

                                                                       
Query: 277 gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggtaaaact 336
           ||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||
Sbjct: 238 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaaaact 297

                                                                
Query: 337 gctgatgtactgttatggaaggacaagtaaacaactgctgtggtgatcggtgg 389
           ||||||||||| |||||||| |||||| | ||| | ||||| ||||| |||||
Sbjct: 298 gctgatgtactattatggaaagacaagaagacatccgctgtagtgattggtgg 350

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 277      gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggtaaaa 334
                ||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||
Sbjct: 17619068 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaaaa 17619125



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                       
Query: 335      ctgctgatgtactgttatggaaggacaagtaaacaactgctgtggtgatcggtgg 389
                ||||||||||||| |||||||| |||||| | ||| | ||||| ||||| |||||
Sbjct: 17621503 ctgctgatgtactattatggaaagacaagaagacatccgctgtagtgattggtgg 17621557

>dbj|AP003527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0564B04
          Length = 64684

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                       
Query: 277   gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggtaaaa 334
             ||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||
Sbjct: 45416 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaaaa 45473



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                    
Query: 335   ctgctgatgtactgttatggaaggacaagtaaacaactgctgtggtgatcggtgg 389
             ||||||||||||| |||||||| |||||| | ||| | ||||| ||||| |||||
Sbjct: 47851 ctgctgatgtactattatggaaagacaagaagacatccgctgtagtgattggtgg 47905

>gb|AY104742.1| Zea mays PCO152525 mRNA sequence
          Length = 1163

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 93/110 (84%)
 Strand = Plus / Plus

                                                                       
Query: 268 aggtcccgtgggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggc 327
           |||||||| || |||||||| || || |||||||| |||||||||||    ||||| |||
Sbjct: 236 aggtcccggggattcaggcttcttggagaggacacttccgtgcacaaatcccttgggggc 295

                                                             
Query: 328 ggtaaaactgctgatgtactgttatggaaggacaagtaaacaactgctgt 377
           |||||||||||||| || ||||||||||| |||||| ||||  |||||||
Sbjct: 296 ggtaaaactgctgacgttctgttatggaaagacaagaaaacttctgctgt 345

>gb|AY105560.1| Zea mays PCO120447 mRNA sequence
          Length = 1191

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 328 ggtaaaactgctgatgtactgttatggaaggacaag 363
           |||||||||||||||||||| || ||||| ||||||
Sbjct: 258 ggtaaaactgctgatgtacttttgtggaaagacaag 293

>ref|XM_759893.1| Theileria parva strain Muguga hypothetical protein (TP02_0420)
            partial mRNA
          Length = 5232

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 18   cacacttccaccacacacact 38
            |||||||||||||||||||||
Sbjct: 2082 cacacttccaccacacacact 2062

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 240     gcccgcgtctgcgccggacaccacggtcaggtc 272
               ||||||||| ||| ||||||| |||||||||||
Sbjct: 2094902 gcccgcgtccgcgtcggacacgacggtcaggtc 2094934

>gb|AC004877.1| Homo sapiens PAC clone RP4-751H13 from 7, complete sequence
          Length = 128361

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   aggcggccccgcccgcgtct 249
             ||||||||||||||||||||
Sbjct: 28377 aggcggccccgcccgcgtct 28358

>ref|NM_064862.3| Caenorhabditis elegans Ribosomal Protein, Small subunit family
           member (rps-29) (rps-29) mRNA, complete cds
          Length = 321

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 242 ccgcgtctgcgccggacaccacgg 265
           |||||||||||| |||||||||||
Sbjct: 77  ccgcgtctgcgctggacaccacgg 100

>gb|AC155890.2| Medicago truncatula chromosome 7 BAC clone mth2-49p3, complete sequence
          Length = 127058

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    acacttccaccacacacact 38
             ||||||||||||||||||||
Sbjct: 19792 acacttccaccacacacact 19773

>gb|AC087415.1|AC087415 Caenorhabditis briggsae cosmid CB005O21, complete sequence
          Length = 68731

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 242   ccgcgtctgcgccggacaccacgg 265
             |||||||||||| |||||||||||
Sbjct: 63580 ccgcgtctgcgctggacaccacgg 63603

>dbj|AK104196.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H05, full
           insert sequence
          Length = 993

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 328 ggtaaaactgctgatgtactgttatggaaggacaag 363
           |||||| ||||||||||||| || ||||| ||||||
Sbjct: 183 ggtaaagctgctgatgtacttttgtggaaagacaag 218

>dbj|AK072628.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130B01, full
           insert sequence
          Length = 880

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 328 ggtaaaactgctgatgtactgttatggaaggacaag 363
           |||||| ||||||||||||| || ||||| ||||||
Sbjct: 65  ggtaaagctgctgatgtacttttgtggaaagacaag 100

>gb|U80953.1| Caenorhabditis elegans cosmid B0412, complete sequence
          Length = 33975

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 242  ccgcgtctgcgccggacaccacgg 265
            |||||||||||| |||||||||||
Sbjct: 5647 ccgcgtctgcgctggacaccacgg 5670

>dbj|AK059921.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G09, full
           insert sequence
          Length = 1028

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 328 ggtaaaactgctgatgtactgttatggaaggacaag 363
           |||||| ||||||||||||| || ||||| ||||||
Sbjct: 232 ggtaaagctgctgatgtacttttgtggaaagacaag 267


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,994,423
Number of Sequences: 3902068
Number of extensions: 1994423
Number of successful extensions: 34317
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34205
Number of HSP's gapped (non-prelim): 111
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)