ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast78d02 |
|---|---|
| Clone Library Name | barley_pub |
>COPD_CAEEL (Q09236) Probable coatomer subunit delta (Delta-coat protein)| (Delta-COP) Length = 515 Score = 31.2 bits (69), Expect = 0.63 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -1 Query: 323 PSWNGATPISAQIDLPEATAPTEPDLPRPMAPAEP 219 PS+ +T IS+ P A A +EP PRP AP P Sbjct: 186 PSYQSSTGISSS-STPNAAAVSEPAAPRPSAPKGP 219
>VG65_ICHV1 (Q00106) Hypothetical gene 65 protein| Length = 1434 Score = 31.2 bits (69), Expect = 0.63 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = -1 Query: 287 IDLPEATAPTEPDLPRPMAPA---EPDFPRAAELDLPGA 180 +DLP A EPDLPR + P EPD P DLP A Sbjct: 911 LDLPPG-AYEEPDLPRDLPPGAYEEPDLPPDLPRDLPPA 948 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 3/28 (10%) Frame = -1 Query: 254 PDLPRPMAPA---EPDFPRAAELDLPGA 180 PDLPR + PA EPD P DLP A Sbjct: 939 PDLPRDLPPAAYEEPDLPPDLPRDLPPA 966
>PRAX_HUMAN (Q9BXM0) Periaxin| Length = 1461 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/38 (44%), Positives = 21/38 (55%) Frame = -1 Query: 302 PISAQIDLPEATAPTEPDLPRPMAPAEPDFPRAAELDL 189 P ++I LPE P PD+ P AP E PRA E+ L Sbjct: 748 PKVSEIRLPEMQVPKVPDVHLPKAP-EVKLPRAPEVQL 784
>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1404 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = -1 Query: 305 TPISAQIDLPEATAPTEPDLPRPMAPAE--PDFPRAAELDLP 186 TP PE APT P+ P P P E P P+AA + P Sbjct: 636 TPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTP 677 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -1 Query: 305 TPISAQIDLPEATAPTEPDLPRPMAPAEP 219 TP +A + P+ APT P P P P EP Sbjct: 668 TPKAAAPNTPKEPAPTTPKEPAPTTPKEP 696 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/43 (34%), Positives = 18/43 (41%) Frame = -1 Query: 305 TPISAQIDLPEATAPTEPDLPRPMAPAEPDFPRAAELDLPGAT 177 TP P+ APT P P P P P P +E+ P T Sbjct: 822 TPKETAPTTPKEPAPTTPKKPAPTTPETPP-PTTSEVSTPTTT 863 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -1 Query: 278 PEATAPTEPDLPRPMAPAEP 219 P+ TAPT P P P P EP Sbjct: 754 PKGTAPTTPKEPAPTTPKEP 773 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 5/48 (10%) Frame = -1 Query: 305 TPISAQIDLPEATAPTEPDLPRP-----MAPAEPDFPRAAELDLPGAT 177 TP PE APT P+ P P +AP P+ P + P T Sbjct: 620 TPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPT 667
>ATS16_HUMAN (Q8TE57) ADAMTS-16 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 16) (ADAM-TS 16) (ADAM-TS16) Length = 1224 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = -1 Query: 278 PEATAPTEPDLPRPMAPAE-PDFPRAAELDLPGA 180 P A AP P +PRP PAE P + E DL A Sbjct: 32 PAAAAPGSPSVPRPPPPAERPGWMEKGEYDLVSA 65
>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding| protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) Length = 2426 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Frame = -1 Query: 302 PISAQIDLPEATAPTEPDLPRPMA---PAEPDFPRAAELDLPGATI 174 P++ ++LP +A P+LP P++ P P P A +LPG ++ Sbjct: 398 PVTPVLELPGPSATPVPELPGPLSTPVPELPGPPATAVPELPGPSV 443
>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 Length = 863 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -1 Query: 281 LPEATAPTEPDLPRPMAPAEPDFPRAAELDLPGA 180 LP A +P P P AP+ P PR + +PG+ Sbjct: 738 LPPAASPGPPAASPPAAPSSPRAPRTSPYGVPGS 771
>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) (Hyperpolarization-activated cation channel 1) (HAC-1) Length = 863 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -1 Query: 281 LPEATAPTEPDLPRPMAPAEPDFPRAAELDLPGA 180 LP A +P P P AP+ P PR + +PG+ Sbjct: 738 LPPAASPGPPAASPPAAPSSPRAPRTSPYGVPGS 771
>VRP1_YEAST (P37370) Verprolin| Length = 817 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = -1 Query: 305 TPISAQIDLPEATAPTEPDLPRPMAPAEPDFPRAAELDLP 186 +P A +P ++AP PD+P AP P P + LP Sbjct: 141 SPAPAVPSIPSSSAPPIPDIPSSAAPPIPIVPSSPAPPLP 180
>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) Length = 1098 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/22 (54%), Positives = 12/22 (54%) Frame = -2 Query: 241 GPWPPPNRTSRGPPSWTCRGPP 176 GP PPPN RGPP PP Sbjct: 31 GPAPPPNAVMRGPPPLMRPPPP 52
>TCRG1_MOUSE (Q8CGF7) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) (p144) (Formin-binding protein 28) (FBP 28) Length = 1100 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/22 (54%), Positives = 12/22 (54%) Frame = -2 Query: 241 GPWPPPNRTSRGPPSWTCRGPP 176 GP PPPN RGPP PP Sbjct: 31 GPAPPPNAVMRGPPPLMRPPPP 52
>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional| activator IE175) (Alpha-4 protein) Length = 1298 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -1 Query: 293 AQIDLPEATAPTEPDLPRPMAPAEPDFPRAA 201 A+ LP P+ P P P APA+P PRAA Sbjct: 760 ARAPLPAPAPPSTPPGPEP-APAQPAAPRAA 789
>MILK2_HUMAN (Q8IY33) MICAL-like protein 2| Length = 904 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = -1 Query: 317 WNGATPISAQIDLPEATAPTEPDLPRPMAPAEPDFPRAA 201 W+ A P +A A P+ PD PRP P PR A Sbjct: 348 WSSAAPCTAAAASHPAVPPSAPD-PRPATPQGGGAPRVA 385
>RS2_CAUCR (Q9A703) 30S ribosomal protein S2| Length = 268 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -1 Query: 296 SAQIDLPEATAPTEPDLPRPMAPAEPDFPRAAE 198 +A +DL + AP EP L R +AP P A E Sbjct: 232 AAGVDLGASVAPVEPALARELAPEAPAAEAAPE 264
>BIGA_SALTY (P25927) Putative surface-exposed virulence protein bigA precursor| Length = 1953 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%) Frame = -1 Query: 296 SAQIDLPEAT-APTEPDLPRPMAPAEPDFPR 207 +A I +P+AT APTE +P P PA+P+ P+ Sbjct: 1487 TADIVIPDATTAPTEGSIPTP--PADPNAPQ 1515
>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 7/49 (14%) Frame = -1 Query: 305 TPISAQIDLPEATAPTEPDLPRPMAPAEPDFPRA-------AELDLPGA 180 TP S + P E +PRP AP EP P A L LPG+ Sbjct: 135 TPFSPEGAFPGGGPAEEEGVPRPRAPPEPPDPGAPRPPPDPGPLPLPGS 183
>NIFA_AZOCA (P09133) Nif-specific regulatory protein| Length = 615 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = -1 Query: 317 WNGATPISAQIDLPEATAPTEPDLPRPMAPAEP 219 W G+ P +P A P P P P+A A P Sbjct: 509 WKGSAPKPVMPHVPPAPTPLTPLSPAPLATAAP 541
>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (DNup214) Length = 1711 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/42 (35%), Positives = 18/42 (42%) Frame = -1 Query: 323 PSWNGATPISAQIDLPEATAPTEPDLPRPMAPAEPDFPRAAE 198 PS P A +P+AT P LP+PM P P E Sbjct: 901 PSPPDVAPTPAVAPMPQATVTVAPPLPKPM----PSIPSVVE 938
>KIF17_HUMAN (Q9P2E2) Kinesin-like protein KIF17 (KIF3-related motor protein)| Length = 1029 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -1 Query: 287 IDLPEATAPTEPDLPRPMAPAEPDFPRAAELDL 189 + +P T EP RP A A DFP E+DL Sbjct: 645 VQVPAPTDLLEPSDARPEAEAADDFPPRPEVDL 677
>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (hMAdCAM-1) Length = 406 Score = 24.3 bits (51), Expect(2) = 5.5 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -2 Query: 229 PPNRTSRGPPSWTCRGPP 176 PP+ TS+ PP T + PP Sbjct: 264 PPDTTSQEPPDTTSQEPP 281 Score = 22.3 bits (46), Expect(2) = 5.5 Identities = 10/31 (32%), Positives = 13/31 (41%) Frame = -1 Query: 308 ATPISAQIDLPEATAPTEPDLPRPMAPAEPD 216 A P+ PE T P+ P +P PD Sbjct: 220 AIPVLHSPTSPEPPDTTSPEPPNTTSPESPD 250
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -1 Query: 308 ATPISAQIDLPEATAPTEPDLPRPMAPAEPDFP 210 ATP +A + P + PD+ +P A+PDFP Sbjct: 314 ATPGAAPLAFPPPPSQAAPDMSKP-PTAQPDFP 345
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -1 Query: 308 ATPISAQIDLPEATAPTEPDLPRPMAPAEPDFP 210 ATP +A + P + PD+ +P A+PDFP Sbjct: 314 ATPGAAPLAFPPPPSQAAPDMSKP-PTAQPDFP 345
>VG28_ICHV1 (Q00131) Hypothetical gene 28 protein| Length = 590 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 4/32 (12%) Frame = -1 Query: 293 AQIDLPEATAPTEPDLPRP----MAPAEPDFP 210 A + P AP +P LP+P +AP EP P Sbjct: 530 APLSTPAQAAPVQPSLPQPVPEPLAPQEPPPP 561
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = -1 Query: 332 TYCPSWNGATPISAQIDLPEATAPTEPDLPRPMAPAEPDFPRAA 201 TY PS P + P+ T PT P+P +P P P+A+ Sbjct: 73 TYTPSPKPTPPPAT----PKPTPPTYTPSPKPKSPVYPPPPKAS 112
>Y2366_HALSA (Q9HMV9) UPF0148 protein Vng2366c| Length = 182 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = -1 Query: 278 PEATAPTEPDLPRPMAPAEPDFPRAAELDLP 186 P ++ PT PD A A D P AA D P Sbjct: 97 PHSSPPTTPDTSSSTAAATDDVPTAAARDRP 127
>MTSS1_HUMAN (O43312) Metastasis suppressor protein 1 (Missing in metastasis| protein) (Metastasis suppressor YGL-1) Length = 755 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 311 GATPISAQIDLPEATAPTEPDLPRPMAPAEPDFP 210 GA PI + + PT PDLP + PA PD P Sbjct: 605 GAGPIPIKTPVIPVKTPTVPDLP-GVLPAPPDGP 637
>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)| Length = 2414 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = -1 Query: 329 YCPSWNGATPISAQIDLPEATAPTEPDLPRPMAPAEPDFPRAAEL 195 Y P A P+S + T PT P +P P P P A E+ Sbjct: 1886 YLPRTQAAGPVSQGKAAGQVTPPTPPQTAQPPLPGPP--PTAVEM 1928
>ZN319_HUMAN (Q9P2F9) Zinc finger protein 319| Length = 582 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -1 Query: 278 PEATAPTEPDLPRPMAPAEPDFPRAAELDLPGAT 177 P T P +P P+P AEP P AE LP T Sbjct: 8 PPQTQPQQPQPPQPQHHAEPP-PALAEHTLPPGT 40
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -1 Query: 311 GATPISAQIDLPEATAPTEPDLPRPMAPAE 222 G TP A + PE PT P+ P+P P + Sbjct: 1301 GRTP-RASVKSPEQNVPTAPEHPQPSTPTD 1329 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,236,010 Number of Sequences: 219361 Number of extensions: 345739 Number of successful extensions: 2329 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1907 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2284 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
