ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast78c02 |
|---|---|
| Clone Library Name | barley_pub |
>LAX1_ORYSA (Q5N892) Auxin transporter-like protein 1| Length = 492 Score = 293 bits (751), Expect = 1e-79 Identities = 136/144 (94%), Positives = 141/144 (97%) Frame = +2 Query: 2 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALINGQVEG 181 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAAL+NGQ EG Sbjct: 172 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALLNGQAEG 231 Query: 182 VTHTGPNKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPS 361 +THTGP KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPS Sbjct: 232 ITHTGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPS 291 Query: 362 ASAMYWAYGDELLAHANAFSLLPR 433 ASAMYWA+GDELL H+NAFSLLP+ Sbjct: 292 ASAMYWAFGDELLTHSNAFSLLPK 315
>LAX2_ORYSA (Q688J2) Auxin transporter-like protein 2| Length = 482 Score = 283 bits (725), Expect = 1e-76 Identities = 130/144 (90%), Positives = 140/144 (97%) Frame = +2 Query: 2 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALINGQVEG 181 INDRLDKRTWTYIFGACC+TTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAA ++GQV+G Sbjct: 163 INDRLDKRTWTYIFGACCSTTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAAAVHGQVDG 222 Query: 182 VTHTGPNKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPS 361 VTH+GP+K+VLYFTGATNILYTFGGHAVTVEIMHAMWKP KFKYIYL+ATLYVFTLTLPS Sbjct: 223 VTHSGPSKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLVATLYVFTLTLPS 282 Query: 362 ASAMYWAYGDELLAHANAFSLLPR 433 ASAMYWA+GD LL H+NAFSLLPR Sbjct: 283 ASAMYWAFGDALLTHSNAFSLLPR 306
>LAX4_MEDTR (Q8L884) Auxin transporter-like protein 4 (AUX1-like protein 4)| (MtLAX4) Length = 482 Score = 278 bits (711), Expect = 5e-75 Identities = 126/144 (87%), Positives = 137/144 (95%) Frame = +2 Query: 2 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALINGQVEG 181 IND+LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWY+AIAA++NGQ+E Sbjct: 164 INDKLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYMAIAAIVNGQIEN 223 Query: 182 VTHTGPNKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPS 361 V H+GP KLVLYFTGATNILYTFGGHAVTVEIMHAMWKP KFKYIY LATLYVFTLT+PS Sbjct: 224 VVHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYFLATLYVFTLTIPS 283 Query: 362 ASAMYWAYGDELLAHANAFSLLPR 433 A A+YWA+GDELL H+NAFSLLP+ Sbjct: 284 AVAVYWAFGDELLNHSNAFSLLPK 307
>LAX1_ARATH (Q9LFB2) Auxin transporter-like protein 1 (AUX1-like protein 1)| Length = 488 Score = 278 bits (711), Expect = 5e-75 Identities = 128/146 (87%), Positives = 138/146 (94%) Frame = +2 Query: 2 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALINGQVEG 181 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYL IA+ ++GQ EG Sbjct: 170 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIASFLHGQAEG 229 Query: 182 VTHTGPNKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPS 361 VTH+GP KLVLYFTGATNILYTFGGHAVTVEIMHAMWKP KFK IYL+ATLYVFTLTLPS Sbjct: 230 VTHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPRKFKSIYLMATLYVFTLTLPS 289 Query: 362 ASAMYWAYGDELLAHANAFSLLPRRR 439 ASA+YWA+GD+LL H+NAFSLLP+ R Sbjct: 290 ASAVYWAFGDQLLNHSNAFSLLPKTR 315
>LAX2_MEDTR (Q9FEL7) Auxin transporter-like protein 2 (AUX1-like protein 2)| (MtLAX2) Length = 484 Score = 278 bits (710), Expect = 6e-75 Identities = 126/144 (87%), Positives = 137/144 (95%) Frame = +2 Query: 2 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALINGQVEG 181 IND LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYL IA++++GQ E Sbjct: 164 INDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIASIVHGQAEN 223 Query: 182 VTHTGPNKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPS 361 VTHTGP KLVLYFTGATNILYTFGGHAVTVEIMHAMWKP KFKYIYL+ATLYVFTLT+PS Sbjct: 224 VTHTGPKKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLMATLYVFTLTIPS 283 Query: 362 ASAMYWAYGDELLAHANAFSLLPR 433 A+A+YWA+GDELL H+NAFSLLP+ Sbjct: 284 ATAVYWAFGDELLNHSNAFSLLPK 307
>AUX1_ARATH (Q96247) Auxin transporter protein 1 (Auxin influx carrier protein| 1) (Polar auxin transport inhibitor resistant protein 1) Length = 485 Score = 275 bits (703), Expect = 4e-74 Identities = 125/144 (86%), Positives = 137/144 (95%) Frame = +2 Query: 2 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALINGQVEG 181 IND LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIA++I+GQ EG Sbjct: 164 INDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIASIIHGQAEG 223 Query: 182 VTHTGPNKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPS 361 V H+GP KLVLYFTGATNILYTFGGHAVTVEIMHAMWKP KFKYIYL+ATLYVFTLT+PS Sbjct: 224 VKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLMATLYVFTLTIPS 283 Query: 362 ASAMYWAYGDELLAHANAFSLLPR 433 A+A+YWA+GD LL H+NAFSL+P+ Sbjct: 284 AAAVYWAFGDALLDHSNAFSLMPK 307
>LAX1_MEDTR (Q9FEL8) Auxin transporter-like protein 1 (AUX1-like protein 1)| (MtLAX1) Length = 479 Score = 267 bits (682), Expect = 1e-71 Identities = 122/144 (84%), Positives = 132/144 (91%) Frame = +2 Query: 2 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALINGQVEG 181 IND LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWY+ IAA+++GQVE Sbjct: 163 INDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYMTIAAIVHGQVEN 222 Query: 182 VTHTGPNKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPS 361 V H+GP K+V YFTGATNILYTFGGHAVTVEIMHAMWKP KFK IY ATLYVFTLTLPS Sbjct: 223 VVHSGPKKMVWYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYFFATLYVFTLTLPS 282 Query: 362 ASAMYWAYGDELLAHANAFSLLPR 433 A A+YWA+GD+LL H+NAFSLLPR Sbjct: 283 AIAVYWAFGDQLLDHSNAFSLLPR 306
>LAX5_MEDTR (Q8L883) Auxin transporter-like protein 5 (AUX1-like protein 5)| (MtLAX5) Length = 490 Score = 267 bits (682), Expect = 1e-71 Identities = 122/144 (84%), Positives = 135/144 (93%) Frame = +2 Query: 2 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALINGQVEG 181 IND LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL MTTYTAWYL IAA+++GQVEG Sbjct: 160 INDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYLTIAAVLHGQVEG 219 Query: 182 VTHTGPNKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPS 361 V H+GPNK++LYFTGATNILYTFGGHAVTVEIMHAMWKP KFK IYLLATLYV TLT+PS Sbjct: 220 VKHSGPNKIILYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVLTLTIPS 279 Query: 362 ASAMYWAYGDELLAHANAFSLLPR 433 A+A+YWA+GD LL H+NAF+LLP+ Sbjct: 280 ATAVYWAFGDMLLNHSNAFALLPK 303
>LAX2_ARATH (Q9S836) Auxin transporter-like protein 2 (AUX1-like protein 2)| Length = 483 Score = 265 bits (677), Expect = 4e-71 Identities = 123/144 (85%), Positives = 134/144 (93%) Frame = +2 Query: 2 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALINGQVEG 181 IND LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL MTTYTAWYL IA++++GQVEG Sbjct: 158 INDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASILHGQVEG 217 Query: 182 VTHTGPNKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPS 361 V H+GP+KLVLYFTGATNILYTFGGHAVTVEIMHAMWKP KFK IYL ATLYV TLTLPS Sbjct: 218 VKHSGPSKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLFATLYVLTLTLPS 277 Query: 362 ASAMYWAYGDELLAHANAFSLLPR 433 ASA+YWA+GD LL H+NAF+LLP+ Sbjct: 278 ASAVYWAFGDLLLNHSNAFALLPK 301
>LAX3_ORYSA (Q7XGU4) Auxin transporter-like protein 3| Length = 547 Score = 263 bits (672), Expect = 2e-70 Identities = 121/144 (84%), Positives = 132/144 (91%) Frame = +2 Query: 2 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALINGQVEG 181 IND LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL MTTYTAWY+A+A+LI+GQVEG Sbjct: 179 INDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYIAVASLIHGQVEG 238 Query: 182 VTHTGPNKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPS 361 V H+GP +VLYFTGATNILYTFGGHAVTVEIMHAMW+P KFK IYLLAT+YV TLTLPS Sbjct: 239 VAHSGPTSIVLYFTGATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLLATVYVLTLTLPS 298 Query: 362 ASAMYWAYGDELLAHANAFSLLPR 433 ASA YWA+GD LL H+NA +LLPR Sbjct: 299 ASAAYWAFGDALLTHSNALALLPR 322
>LAX3_MEDTR (Q9FEL6) Auxin transporter-like protein 3 (AUX1-like protein 3)| (MtLAX3) Length = 465 Score = 262 bits (669), Expect = 3e-70 Identities = 120/144 (83%), Positives = 131/144 (90%) Frame = +2 Query: 2 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALINGQVEG 181 IND LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL MTTYTAWY+ IA++++GQ E Sbjct: 157 INDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYMTIASILHGQAED 216 Query: 182 VTHTGPNKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPS 361 V H+GP KLVLYFTGATNILYTFGGHAVTVEIMHAMWKP KFK IYL+ATLYV TLTLPS Sbjct: 217 VKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKMIYLIATLYVMTLTLPS 276 Query: 362 ASAMYWAYGDELLAHANAFSLLPR 433 A+A+YWA+GD LL H+NA SLLPR Sbjct: 277 AAAVYWAFGDNLLTHSNALSLLPR 300
>LAX3_ARATH (Q9CA25) Auxin transporter-like protein 3 (AUX1-like protein 3)| Length = 470 Score = 261 bits (667), Expect = 6e-70 Identities = 119/144 (82%), Positives = 132/144 (91%) Frame = +2 Query: 2 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALINGQVEG 181 IND+LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL MTTYT+WYL IA+L++GQ E Sbjct: 162 INDKLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLAMTTYTSWYLTIASLLHGQAED 221 Query: 182 VTHTGPNKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPS 361 V H+GP +VLYFTGATNILYTFGGHAVTVEIMHAMWKP KFK IYLLAT+YV TLTLPS Sbjct: 222 VKHSGPTTMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATIYVLTLTLPS 281 Query: 362 ASAMYWAYGDELLAHANAFSLLPR 433 ASA+YWA+GD+LL H+NA SLLP+ Sbjct: 282 ASAVYWAFGDKLLTHSNALSLLPK 305
>LAX4_ORYSA (Q53JG7) Putative auxin transporter-like protein 4| Length = 480 Score = 246 bits (628), Expect = 2e-65 Identities = 114/146 (78%), Positives = 131/146 (89%), Gaps = 2/146 (1%) Frame = +2 Query: 2 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALINGQVEG 181 INDRLDKRTWTYIFGACCATTVF+PSFHNYR+WSFLGL MT+YTAWYL +AA+++G+V+G Sbjct: 171 INDRLDKRTWTYIFGACCATTVFVPSFHNYRVWSFLGLLMTSYTAWYLTVAAVVHGKVDG 230 Query: 182 VT-HTGPNK-LVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTL 355 GP+K +VLYFTGATNILYTFGGHAVTVEIMHAMW+P +FK IYL AT YV TLTL Sbjct: 231 AAPRAGPSKTMVLYFTGATNILYTFGGHAVTVEIMHAMWRPRRFKMIYLAATAYVLTLTL 290 Query: 356 PSASAMYWAYGDELLAHANAFSLLPR 433 PSA+AMYWA+GD LL H+NAF+LLPR Sbjct: 291 PSAAAMYWAFGDALLDHSNAFALLPR 316
>YJG2_YEAST (P40367) Hypothetical 94.9 kDa protein in MRPL8-NUP82 intergenic| region Length = 830 Score = 30.0 bits (66), Expect = 2.9 Identities = 17/56 (30%), Positives = 25/56 (44%) Frame = +2 Query: 2 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALING 169 I +L T+ IFG C T + FH + IWS + + W + L+NG Sbjct: 765 IRSKLPAFTYHCIFGTCLMTACVVLRFHLF-IWSVFSPKLCYFLGWNF-VMGLLNG 818
>SECF_HAEIN (P44590) Protein-export membrane protein secF| Length = 325 Score = 29.3 bits (64), Expect = 4.9 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +2 Query: 74 PSFHNYRIWSFLGLGMTTYTAWYLAIA 154 PS HN+ + +G+G TY++ ++AIA Sbjct: 274 PSIHNFSLALLVGIGFGTYSSIFVAIA 300
>FA43B_HUMAN (Q6ZT52) Protein FAM43B| Length = 329 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Frame = +2 Query: 125 TYTAWYLAIAALINGQVEGVTHTGPNKLVLYF--TGATNILYTFGGHAVTVE 274 TYT WYL A ++ + +G T K+ G T + T G H + ++ Sbjct: 71 TYTVWYLGNAVTLHAKGDGCTDDAVGKIWARCGPGGGTKMKLTLGPHGIRMQ 122
>SBMA_ECOLI (P0AFY6) Protein sbmA| Length = 406 Score = 28.5 bits (62), Expect = 8.4 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +2 Query: 68 FIPSFHNYRIWSFLGLGMTTYTAWYL 145 FI S H ++ WS LG + + W+L Sbjct: 76 FIYSPHRWQYWSILGTALIIFVTWFL 101
>SBMA_ECO57 (P0AFY7) Protein sbmA| Length = 406 Score = 28.5 bits (62), Expect = 8.4 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +2 Query: 68 FIPSFHNYRIWSFLGLGMTTYTAWYL 145 FI S H ++ WS LG + + W+L Sbjct: 76 FIYSPHRWQYWSILGTALIIFVTWFL 101 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,560,459 Number of Sequences: 219361 Number of extensions: 717589 Number of successful extensions: 1984 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1954 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1982 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
