ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast78b12 |
|---|---|
| Clone Library Name | barley_pub |
>NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)| (153 kDa nucleoporin) Length = 1468 Score = 32.0 bits (71), Expect = 0.87 Identities = 20/67 (29%), Positives = 31/67 (46%) Frame = +2 Query: 224 KNTITSDPKT*PAPGQATTFAPRRATSASTAGHRMDKRVTSR*HQSFSMALVCVHRCNKI 403 +NT T D +T P P + T P ++AS + + R H +FS+ C Sbjct: 93 ENTNTDDGRTTPEPTGSNTEEPSTTSTASNYPDVLTRPSLHRSHLNFSVLESPALHCQPS 152 Query: 404 LSTSFPI 424 S++FPI Sbjct: 153 TSSAFPI 159
>3MGH_STAAW (P65416) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 30.8 bits (68), Expect = 1.9 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +1 Query: 247 QNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 360 Q+ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAS (Q6G6X6) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 30.8 bits (68), Expect = 1.9 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +1 Query: 247 QNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 360 Q+ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAR (Q6GE90) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 30.8 bits (68), Expect = 1.9 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +1 Query: 247 QNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 360 Q+ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAN (P65415) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 30.8 bits (68), Expect = 1.9 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +1 Query: 247 QNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 360 Q+ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAM (P65414) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 30.8 bits (68), Expect = 1.9 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +1 Query: 247 QNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 360 Q+ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAC (Q5HDL2) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 30.8 bits (68), Expect = 1.9 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +1 Query: 247 QNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 360 Q+ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC| 2.7.11.1) Length = 942 Score = 30.0 bits (66), Expect = 3.3 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 16/92 (17%) Frame = +1 Query: 244 PQNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT---VTSVIFDGFGLCSPMQQDLVD- 411 P + +W G+D C T+++G C + +L +T I FG +Q+ ++ Sbjct: 338 PPRLAESWKGNDPC--TNWIGIACSNGNITVISLEKMELTGTISPEFGAIKSLQRIILGI 395 Query: 412 ------------ELPDLALFQASSNNFGGEVP 471 LP+L SSN G+VP Sbjct: 396 NNLTGMIPQELTTLPNLKTLDVSSNKLFGKVP 427
>K502_ACTCH (P43394) Fruit protein PKIWI502| Length = 317 Score = 30.0 bits (66), Expect = 3.3 Identities = 18/53 (33%), Positives = 25/53 (47%) Frame = +1 Query: 103 SRPR*ATPVL*DTPAFFLVPTAT*LPKRAALPCILRHPAIQEHHHLRPQNVTS 261 SRP + P L P+ L + + P LRHP ++ HHH R +V S Sbjct: 6 SRPSLSRPSLSRHPSLTLHSSLSHAPPHHRPVAFLRHPTLRYHHHGRLLSVAS 58
>PGLR2_JUNAS (Q9FY19) Polygalacturonase precursor (PG) (EC 3.2.1.15) (Pectinase)| (Major pollen allergen Jun a 2) Length = 507 Score = 30.0 bits (66), Expect = 3.3 Identities = 10/39 (25%), Positives = 22/39 (56%) Frame = +2 Query: 107 GPAEPHLSYKIHQHSSSYPQPRDFPSEQLYHAYFAIQRF 223 GP +PH S+K+ ++YP P + + +++ + + F Sbjct: 111 GPCQPHFSFKVDGTIAAYPDPAKWKNSKIWMHFARLTDF 149
>VTS1_EMENI (Q5BGC4) Protein vts1| Length = 611 Score = 30.0 bits (66), Expect = 3.3 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +1 Query: 238 LRPQNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTS 357 L P NV ++W T+ G GAPH Q S++ + Sbjct: 330 LSPYNVNASWASMTNTPMTATFGSQLGAPHQQGSDMVANA 369
>ZNF92_HUMAN (Q03936) Zinc finger protein 92 (Zinc finger protein HTF12)| Length = 586 Score = 29.3 bits (64), Expect = 5.6 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = +1 Query: 250 NVTSTWTGHDICATT--SYLGFNCGAPHGQASNLTVTSVIFDG 372 N +S +T H I T SY CG Q+SNLT +I+ G Sbjct: 491 NQSSIFTKHKIIHTEGKSYKCEKCGNAFNQSSNLTARKIIYTG 533
>YRPE_BACSU (O05410) Hypothetical protein yrpE| Length = 251 Score = 29.3 bits (64), Expect = 5.6 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = +2 Query: 140 HQHSSSYPQPRDFPSEQLYHAYFAIQRFKNTITSD 244 H+HS + D +E++Y YF + K+ + SD Sbjct: 59 HEHSHDHSHAHDEETEKIYEGYFKNSQVKDRLLSD 93
>NU153_HUMAN (P49790) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)| (153 kDa nucleoporin) Length = 1475 Score = 28.9 bits (63), Expect = 7.3 Identities = 21/83 (25%), Positives = 35/83 (42%) Frame = +2 Query: 176 FPSEQLYHAYFAIQRFKNTITSDPKT*PAPGQATTFAPRRATSASTAGHRMDKRVTSR*H 355 +P + H +A + N +D + P P + T P ++AS + + R H Sbjct: 78 WPENKEDHLVYADEESSNI--TDGRITPEPAVSNTEEPSTTSTASNYPDVLTRPSLHRSH 135 Query: 356 QSFSMALVCVHRCNKILSTSFPI 424 +FSM C S++FPI Sbjct: 136 LNFSMLESPALHCQPSTSSAFPI 158
>MURA_BARQU (Q6FYT1) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 431 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/54 (27%), Positives = 25/54 (46%) Frame = -3 Query: 378 TKAIEND*CHREVTRLSMRCPAVEAEVARRGANVVACPGAGYVLGSEVMVFLNR 217 T +EN C EVT L A+ A++ G + + G + G+ + V +R Sbjct: 190 TTLLENAACEPEVTNLIQALNAMGAKITGEGTSTLTIEGVKKLHGARISVIADR 243
>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1874 Score = 28.5 bits (62), Expect = 9.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +1 Query: 229 HHHLRPQNVTSTWT 270 HHHL P+N T +WT Sbjct: 580 HHHLHPENFTLSWT 593 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,442,722 Number of Sequences: 219361 Number of extensions: 1480664 Number of successful extensions: 4214 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4039 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4209 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
