>ASPH_BOVIN (Q28056) Aspartyl/asparaginyl beta-hydroxylase (EC 1.14.11.16)|
           (Aspartate beta-hydroxylase) (ASP beta-hydroxylase)
           (Peptide-aspartate beta-dioxygenase)
          Length = 754

 Score = 35.4 bits (80), Expect = 0.063
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 160 RRPREGGGNLEAGSKSSQSGAARRGFSAWGRRKKAFGGARKEGRKEGMA 14
           +  + GGGN  + S  S +G    G S+ G R++   G  K GRK G++
Sbjct: 5   KNAKGGGGNSSSSSSGSPTGCTSGGSSSPGARRETKQGGLKNGRKGGLS 53

>PDZK8_HUMAN (Q8NEN9) PDZ domain-containing protein 8 (Sarcoma antigen|
           NY-SAR-84/NY-SAR-104)
          Length = 1154

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 6   RPAAIPSFLPSFLAPPKAFFLLPQAENPRRAAPD*LDFDPASRFPPP 146
           +P    +F P     P+A   LP A+ P +A PD L   P    PPP
Sbjct: 580 KPTQGSAFKPPVPPRPQAKVPLPSADAPNQAEPDVLVEKPEKVVPPP 626

>YBQ6_YEAST (P38081) Hypothetical 57.8 kDa protein in PRP6-MUM2 intergenic|
           region
          Length = 501

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 222 WEWECASAHVEGERIAVGVWSGGQGK 145
           WEW    AH+   RI +G W    GK
Sbjct: 111 WEWLSKDAHITALRIPIGYWHVEDGK 136

>GAR1_ASHGO (Q757V8) H/ACA ribonucleoprotein complex subunit 1 (snoRNP protein|
           GAR1)
          Length = 212

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
 Frame = -2

Query: 154 PREGGGNLEAGSKSSQSG--AARRGFSAWGRRKKAFGGARKEGRKEGMAAGRG 2
           P  GG     GS+    G   AR GF   G  +  FGG    G   G   GRG
Sbjct: 145 PGRGGFGGRGGSRGGFGGRGGARGGFGGRGGARGGFGGFGGRGGSRGGFGGRG 197

>YHP4_SCHPO (Q9USP9) Probable RNA-binding protein C902.04|
          Length = 589

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +3

Query: 9   PAAIPSFLPSFLAPPKAFFLLPQAENP--RRAAPD*LDFDPASRFPPPSLGLR 161
           PAA P F P F    K  F +    N   RR +P    F+P   +P P LG R
Sbjct: 178 PAAQPPFPPPFKMRGKRGFGMRHEHNSELRRHSPGNRRFNPYKAYPQPHLGHR 230

>FBRL_LEIMA (P35549) Fibrillarin|
          Length = 297

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = -2

Query: 142 GGNLEAGSKSSQSGAARRGFSAWGRRKKAFGGARKEGRKEGMAAGRG 2
           GG    GS+  + G  R G    GR     GG R  GR  G   GRG
Sbjct: 8   GGGGRGGSRGGRGGFGRGGGRGGGR-----GGGRGGGRGGGRGGGRG 49

>RC3H1_HUMAN (Q5TC82) Roquin (RING finger and C3H zinc finger protein 1)|
          Length = 1133

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 9   PAAIPSFLPSFLAPPKAF-FLLPQAENPRRAAPD*LDFDPASRFPPP 146
           PAA+PS++P      +      P A +P +  P  L   P SR PPP
Sbjct: 698 PAAVPSYVPESRERYQQIESYYPVAPHPTQIRPSYLREPPYSRLPPP 744

>GRP2_PHAVU (P10496) Glycine-rich cell wall structural protein 1.8 precursor|
           (GRP 1.8)
          Length = 465

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = -2

Query: 145 GGGNLEAGSKSSQSGAARRGFSAWGRRKKAFGGARKEGRKEGMAAG 8
           GGG    G    Q G A  G+ A G      GG +  G   G  AG
Sbjct: 201 GGGEHGGGGGGGQGGGAGGGYGAGGEHGGGAGGGQGGGAGGGYGAG 246

>POLR_TYMVA (P20128) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1844

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +3

Query: 48  PPKAFFLLPQAENPRRAA---PD*LDFDPASRFPPPS 149
           PP A  L P+  +P R +   P   DF+P    PPPS
Sbjct: 659 PPSAPVLFPEINSPHRFSPKLPTTPDFEPTRTSPPPS 695

>NOLA1_MOUSE (Q9CY66) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar|
           protein family A member 1) (snoRNP protein GAR1)
          Length = 231

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -2

Query: 154 PREGGGNLEAGSKSSQSGAARRGFSAWG-RRKKAFGGARKEGRKEGMAAGRG 2
           PR GGG    G    + G  R G    G R  +  GG  + GR  G   GRG
Sbjct: 179 PRGGGGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGFRGGRGGGGFRGRG 230

>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
 Frame = -2

Query: 130 EAGSKSSQSGAARR--------GFSAWGRRKKAFGGARKEGRKEGMAAGRG 2
           EA S+ S  G  RR        G   +G R++  GG    GR+EG   G G
Sbjct: 81  EAQSRGSGGGGGRREGGGGGYGGGGGYGGRREGGGGGGYGGRREGGGGGYG 131

>FBRL_CAEEL (Q22053) Fibrillarin|
          Length = 352

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
 Frame = -2

Query: 151 REGGGNLEAGSKSSQSGAARRGFSAWGR------RKKAFGGARKEGRKEGMAAG 8
           R GGG    G +    G +R GF   GR       + +FGG  + G + G   G
Sbjct: 8   RGGGGGGFRGGRGGDRGGSRGGFGGGGRGGYGGGDRGSFGGGDRGGFRGGRGGG 61

>SALT_ORYSA (P24120) Salt stress-induced protein (Salt protein)|
          Length = 144

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 195 VEGERIAVGVWSGGQGKGEEI 133
           V+G+  A+G W GG+G   EI
Sbjct: 46  VDGQEYAIGPWGGGEGTSTEI 66

>SRBP1_HUMAN (P36956) Sterol regulatory element-binding protein 1 (SREBP-1)|
           (Sterol regulatory element-binding transcription factor
           1)
          Length = 1147

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 3   PRPAAIPSFLPSFLAPPKAFFLLPQAENPRRAAPD*LDFDPASRFPPPSLGLRSRHPPQS 182
           P PA + S L +FL+ P+A    P   +P + AP  L   P+     P  G++    P S
Sbjct: 74  PPPATLSSSLEAFLSGPQA---APSPLSPPQPAPTPLKMYPSMPAFSPGPGIKEESVPLS 130


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,900,168
Number of Sequences: 219361
Number of extensions: 626025
Number of successful extensions: 3138
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3119
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)