ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast78b09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY107654.1| Zea mays PCO095720 mRNA sequence Length = 972 Score = 276 bits (139), Expect = 7e-71 Identities = 241/275 (87%) Strand = Plus / Plus Query: 1 gagtaccagtcgaaggtggcagcggtggccggcgagaagcgcgcggcggcgctgacgtcc 60 |||||||||||| ||||| ||| |||||||||| ||||||| || |||||||||| Sbjct: 51 gagtaccagtcgcgggtgggcgcgtcggccggcgagcagcgcgcccgggagctgacgtcc 110 Query: 61 gggtccatctacttggtgagcgccgggacgagcgactacgtgcagaactactacgtcaac 120 |||||||||||| ||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct: 111 gggtccatctacgtggtgagcgccggcaccagcgactacgtgcagaactactacgtgaac 170 Query: 121 gccatgctcgccgccgcctacacccccgaccagttcgccgacgcgctcatgcagccattc 180 | ||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct: 171 ccgatgctgagcgccgcctacacgcccgaccagttcgccgacgcgctcatgcagcccttc 230 Query: 181 acggccttcgtcgagaggctgtacgggctgggcgcacggcggatcggggtgacgtcgctg 240 || ||||||||||| | |||||| | |||||||| || |||||||| |||||||||||| Sbjct: 231 acctccttcgtcgagggcctgtacagcctgggcgcccgccggatcggcgtgacgtcgctg 290 Query: 241 ccgcccatggggtgcctcccggcgtccgtcaccct 275 ||||| |||||||| |||||||||||||| ||||| Sbjct: 291 ccgccgatggggtgtctcccggcgtccgtgaccct 325 Score = 99.6 bits (50), Expect = 8e-18 Identities = 88/101 (87%) Strand = Plus / Plus Query: 394 gacctcaagctcgtcgtcttggacatctancacccgctcctcaacctcgtcgccgacccc 453 |||||||||||||||||||| |||||||| || ||||||||| |||||||| ||||| Sbjct: 432 gacctcaagctcgtcgtcttcgacatctaccagccgctcctcgacctcgtccaaaacccc 491 Query: 454 atgaccgccgggttcttcgagtctcggcgtgcgtgctgcgg 494 | | |||||||||||||||||| ||||| ||||||||||| Sbjct: 492 accaacgccgggttcttcgagtcccggcgggcgtgctgcgg 532 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 310 tgcgtggagcgtctcaacaacgactccctggccttcaac 348 ||||||||||| |||||||||||||| || |||||||| Sbjct: 348 tgcgtggagcgcctcaacaacgactcactcaccttcaac 386
>ref|XM_469323.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1438 Score = 250 bits (126), Expect = 4e-63 Identities = 231/266 (86%) Strand = Plus / Plus Query: 1 gagtaccagtcgaaggtggcagcggtggccggcgagaagcgcgcggcggcgctgacgtcc 60 |||||| || ||||||||| ||||||||||||| |||| ||||||||||||||||| Sbjct: 496 gagtacaagacgaaggtggaggcggtggccggcgggaagaaggcggcggcgctgacgtcg 555 Query: 61 gggtccatctacttggtgagcgccgggacgagcgactacgtgcagaactactacgtcaac 120 | |||||||||| |||| |||||||| || ||||||| |||||||||||||||||||||| Sbjct: 556 gagtccatctacgtggtcagcgccggcaccagcgacttcgtgcagaactactacgtcaac 615 Query: 121 gccatgctcgccgccgcctacacccccgaccagttcgccgacgcgctcatgcagccattc 180 | ||||| | |||| |||||||||||||||||||| |||||| ||||||||||| ||| Sbjct: 616 ccgatgctgggcgccacctacacccccgaccagttctccgacgtcctcatgcagcccttc 675 Query: 181 acggccttcgtcgagaggctgtacgggctgggcgcacggcggatcggggtgacgtcgctg 240 || ||||| ||||| |||||||||| | ||| || |||||||||| |||||||||||| Sbjct: 676 accaccttcatcgaggggctgtacggacagggggcgaggcggatcggcgtgacgtcgctg 735 Query: 241 ccgcccatggggtgcctcccggcgtc 266 ||||| |||||||||||||||||||| Sbjct: 736 ccgccgatggggtgcctcccggcgtc 761 Score = 129 bits (65), Expect = 9e-27 Identities = 103/116 (88%) Strand = Plus / Plus Query: 381 gaagcggcactcggacctcaagctcgtcgtcttggacatctancacccgctcctcaacct 440 ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| |||| Sbjct: 867 gaagcagcactcggacctcaagctcgtcgtcttcgacatctacaacccgctcctcgacct 926 Query: 441 cgtcgccgaccccatgaccgccgggttcttcgagtctcggcgtgcgtgctgcggga 496 |||| || |||||| ||||||| ||||||||||||||| | ||||||||||||| Sbjct: 927 cgtcaccaaccccactgccgccggtttcttcgagtctcggagagcgtgctgcggga 982
>dbj|AK099266.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013F22, full insert sequence Length = 1508 Score = 250 bits (126), Expect = 4e-63 Identities = 231/266 (86%) Strand = Plus / Plus Query: 1 gagtaccagtcgaaggtggcagcggtggccggcgagaagcgcgcggcggcgctgacgtcc 60 |||||| || ||||||||| ||||||||||||| |||| ||||||||||||||||| Sbjct: 509 gagtacaagacgaaggtggaggcggtggccggcgggaagaaggcggcggcgctgacgtcg 568 Query: 61 gggtccatctacttggtgagcgccgggacgagcgactacgtgcagaactactacgtcaac 120 | |||||||||| |||| |||||||| || ||||||| |||||||||||||||||||||| Sbjct: 569 gagtccatctacgtggtcagcgccggcaccagcgacttcgtgcagaactactacgtcaac 628 Query: 121 gccatgctcgccgccgcctacacccccgaccagttcgccgacgcgctcatgcagccattc 180 | ||||| | |||| |||||||||||||||||||| |||||| ||||||||||| ||| Sbjct: 629 ccgatgctgggcgccacctacacccccgaccagttctccgacgtcctcatgcagcccttc 688 Query: 181 acggccttcgtcgagaggctgtacgggctgggcgcacggcggatcggggtgacgtcgctg 240 || ||||| ||||| |||||||||| | ||| || |||||||||| |||||||||||| Sbjct: 689 accaccttcatcgaggggctgtacggacagggggcgaggcggatcggcgtgacgtcgctg 748 Query: 241 ccgcccatggggtgcctcccggcgtc 266 ||||| |||||||||||||||||||| Sbjct: 749 ccgccgatggggtgcctcccggcgtc 774 Score = 129 bits (65), Expect = 9e-27 Identities = 103/116 (88%) Strand = Plus / Plus Query: 381 gaagcggcactcggacctcaagctcgtcgtcttggacatctancacccgctcctcaacct 440 ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| |||| Sbjct: 880 gaagcagcactcggacctcaagctcgtcgtcttcgacatctacaacccgctcctcgacct 939 Query: 441 cgtcgccgaccccatgaccgccgggttcttcgagtctcggcgtgcgtgctgcggga 496 |||| || |||||| ||||||| ||||||||||||||| | ||||||||||||| Sbjct: 940 cgtcaccaaccccactgccgccggtttcttcgagtctcggagagcgtgctgcggga 995
>dbj|AK060516.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A02, full insert sequence Length = 1482 Score = 234 bits (118), Expect = 2e-58 Identities = 229/266 (86%) Strand = Plus / Plus Query: 1 gagtaccagtcgaaggtggcagcggtggccggcgagaagcgcgcggcggcgctgacgtcc 60 |||||| || ||||||||| ||||||||||||| |||| ||||||||||||||||| Sbjct: 508 gagtacaagacgaaggtggaggcggtggccggcgggaagaaggcggcggcgctgacgtcg 567 Query: 61 gggtccatctacttggtgagcgccgggacgagcgactacgtgcagaactactacgtcaac 120 | | |||||||| |||| |||||||| || ||||||| |||||||||||||||||||||| Sbjct: 568 gagcccatctacgtggtcagcgccggcaccagcgacttcgtgcagaactactacgtcaac 627 Query: 121 gccatgctcgccgccgcctacacccccgaccagttcgccgacgcgctcatgcagccattc 180 | ||||| | |||| |||||||||||||||||||| |||||| ||||||||||| ||| Sbjct: 628 ccgatgctgggcgccacctacacccccgaccagttctccgacgtcctcatgcagcccttc 687 Query: 181 acggccttcgtcgagaggctgtacgggctgggcgcacggcggatcggggtgacgtcgctg 240 || ||||| ||||| ||||||||| | ||| || |||||||||| |||||||||||| Sbjct: 688 accaccttcatcgaggagctgtacggacagggggcgaggcggatcggcgtgacgtcgctg 747 Query: 241 ccgcccatggggtgcctcccggcgtc 266 ||||| |||||||||||||||||||| Sbjct: 748 ccgccgatggggtgcctcccggcgtc 773 Score = 129 bits (65), Expect = 9e-27 Identities = 103/116 (88%) Strand = Plus / Plus Query: 381 gaagcggcactcggacctcaagctcgtcgtcttggacatctancacccgctcctcaacct 440 ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| |||| Sbjct: 879 gaagcagcactcggacctcaagctcgtcgtcttcgacatctacaacccgctcctcgacct 938 Query: 441 cgtcgccgaccccatgaccgccgggttcttcgagtctcggcgtgcgtgctgcggga 496 |||| || |||||| ||||||| ||||||||||||||| | ||||||||||||| Sbjct: 939 cgtcaccaaccccactgccgccggtttcttcgagtctcggagagcgtgctgcggga 994
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 172 bits (87), Expect = 7e-40 Identities = 168/195 (86%) Strand = Plus / Plus Query: 1 gagtaccagtcgaaggtggcagcggtggccggcgagaagcgcgcggcggcgctgacgtcc 60 |||||| || ||||||||| ||||||||||||| |||| ||||||||||||||||| Sbjct: 26961748 gagtacaagacgaaggtggaggcggtggccggcgggaagaaggcggcggcgctgacgtcg 26961807 Query: 61 gggtccatctacttggtgagcgccgggacgagcgactacgtgcagaactactacgtcaac 120 | |||||||||| |||| |||||||| || ||||||| |||||||||||||||||||||| Sbjct: 26961808 gagtccatctacgtggtcagcgccggcaccagcgacttcgtgcagaactactacgtcaac 26961867 Query: 121 gccatgctcgccgccgcctacacccccgaccagttcgccgacgcgctcatgcagccattc 180 | ||||| | |||| |||||||||||||||||||| |||||| ||||||||||| ||| Sbjct: 26961868 ccgatgctgggcgccacctacacccccgaccagttctccgacgtcctcatgcagcccttc 26961927 Query: 181 acggccttcgtcgag 195 || ||||| ||||| Sbjct: 26961928 accaccttcatcgag 26961942 Score = 93.7 bits (47), Expect = 5e-16 Identities = 67/74 (90%) Strand = Plus / Plus Query: 381 gaagcggcactcggacctcaagctcgtcgtcttggacatctancacccgctcctcaacct 440 ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| |||| Sbjct: 26964282 gaagcagcactcggacctcaagctcgtcgtcttcgacatctacaacccgctcctcgacct 26964341 Query: 441 cgtcgccgacccca 454 |||| || |||||| Sbjct: 26964342 cgtcaccaacccca 26964355 Score = 83.8 bits (42), Expect = 5e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 197 ggctgtacgggctgggcgcacggcggatcggggtgacgtcgctgccgcccatggggtgcc 256 |||||||||| | ||| || |||||||||| ||||||||||||||||| |||||||||| Sbjct: 26964107 ggctgtacggacagggggcgaggcggatcggcgtgacgtcgctgccgccgatggggtgcc 26964166 Query: 257 tcccggcgtc 266 |||||||||| Sbjct: 26964167 tcccggcgtc 26964176 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 466 ttcttcgagtctcggcgtgcgtgctgcggga 496 ||||||||||||||| | ||||||||||||| Sbjct: 26964635 ttcttcgagtctcggagagcgtgctgcggga 26964665 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 424 cacccgctcctcaacctcgtcgccga 449 |||||||||||||||| ||||||||| Sbjct: 10820533 cacccgctcctcaaccgcgtcgccga 10820558 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 agcgcgcggcggcgctgacg 57 |||||||||||||||||||| Sbjct: 9918900 agcgcgcggcggcgctgacg 9918919
>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete sequence Length = 149303 Score = 172 bits (87), Expect = 7e-40 Identities = 168/195 (86%) Strand = Plus / Plus Query: 1 gagtaccagtcgaaggtggcagcggtggccggcgagaagcgcgcggcggcgctgacgtcc 60 |||||| || ||||||||| ||||||||||||| |||| ||||||||||||||||| Sbjct: 140748 gagtacaagacgaaggtggaggcggtggccggcgggaagaaggcggcggcgctgacgtcg 140807 Query: 61 gggtccatctacttggtgagcgccgggacgagcgactacgtgcagaactactacgtcaac 120 | |||||||||| |||| |||||||| || ||||||| |||||||||||||||||||||| Sbjct: 140808 gagtccatctacgtggtcagcgccggcaccagcgacttcgtgcagaactactacgtcaac 140867 Query: 121 gccatgctcgccgccgcctacacccccgaccagttcgccgacgcgctcatgcagccattc 180 | ||||| | |||| |||||||||||||||||||| |||||| ||||||||||| ||| Sbjct: 140868 ccgatgctgggcgccacctacacccccgaccagttctccgacgtcctcatgcagcccttc 140927 Query: 181 acggccttcgtcgag 195 || ||||| ||||| Sbjct: 140928 accaccttcatcgag 140942 Score = 93.7 bits (47), Expect = 5e-16 Identities = 67/74 (90%) Strand = Plus / Plus Query: 381 gaagcggcactcggacctcaagctcgtcgtcttggacatctancacccgctcctcaacct 440 ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| |||| Sbjct: 143282 gaagcagcactcggacctcaagctcgtcgtcttcgacatctacaacccgctcctcgacct 143341 Query: 441 cgtcgccgacccca 454 |||| || |||||| Sbjct: 143342 cgtcaccaacccca 143355 Score = 83.8 bits (42), Expect = 5e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 197 ggctgtacgggctgggcgcacggcggatcggggtgacgtcgctgccgcccatggggtgcc 256 |||||||||| | ||| || |||||||||| ||||||||||||||||| |||||||||| Sbjct: 143107 ggctgtacggacagggggcgaggcggatcggcgtgacgtcgctgccgccgatggggtgcc 143166 Query: 257 tcccggcgtc 266 |||||||||| Sbjct: 143167 tcccggcgtc 143176 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 466 ttcttcgagtctcggcgtgcgtgctgcggga 496 ||||||||||||||| | ||||||||||||| Sbjct: 143635 ttcttcgagtctcggagagcgtgctgcggga 143665
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 172 bits (87), Expect = 7e-40 Identities = 168/195 (86%) Strand = Plus / Plus Query: 1 gagtaccagtcgaaggtggcagcggtggccggcgagaagcgcgcggcggcgctgacgtcc 60 |||||| || ||||||||| ||||||||||||| |||| ||||||||||||||||| Sbjct: 27053071 gagtacaagacgaaggtggaggcggtggccggcgggaagaaggcggcggcgctgacgtcg 27053130 Query: 61 gggtccatctacttggtgagcgccgggacgagcgactacgtgcagaactactacgtcaac 120 | |||||||||| |||| |||||||| || ||||||| |||||||||||||||||||||| Sbjct: 27053131 gagtccatctacgtggtcagcgccggcaccagcgacttcgtgcagaactactacgtcaac 27053190 Query: 121 gccatgctcgccgccgcctacacccccgaccagttcgccgacgcgctcatgcagccattc 180 | ||||| | |||| |||||||||||||||||||| |||||| ||||||||||| ||| Sbjct: 27053191 ccgatgctgggcgccacctacacccccgaccagttctccgacgtcctcatgcagcccttc 27053250 Query: 181 acggccttcgtcgag 195 || ||||| ||||| Sbjct: 27053251 accaccttcatcgag 27053265 Score = 93.7 bits (47), Expect = 5e-16 Identities = 67/74 (90%) Strand = Plus / Plus Query: 381 gaagcggcactcggacctcaagctcgtcgtcttggacatctancacccgctcctcaacct 440 ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| |||| Sbjct: 27055605 gaagcagcactcggacctcaagctcgtcgtcttcgacatctacaacccgctcctcgacct 27055664 Query: 441 cgtcgccgacccca 454 |||| || |||||| Sbjct: 27055665 cgtcaccaacccca 27055678 Score = 83.8 bits (42), Expect = 5e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 197 ggctgtacgggctgggcgcacggcggatcggggtgacgtcgctgccgcccatggggtgcc 256 |||||||||| | ||| || |||||||||| ||||||||||||||||| |||||||||| Sbjct: 27055430 ggctgtacggacagggggcgaggcggatcggcgtgacgtcgctgccgccgatggggtgcc 27055489 Query: 257 tcccggcgtc 266 |||||||||| Sbjct: 27055490 tcccggcgtc 27055499 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 466 ttcttcgagtctcggcgtgcgtgctgcggga 496 ||||||||||||||| | ||||||||||||| Sbjct: 27055958 ttcttcgagtctcggagagcgtgctgcggga 27055988 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 424 cacccgctcctcaacctcgtcgccga 449 |||||||||||||||| ||||||||| Sbjct: 10818634 cacccgctcctcaaccgcgtcgccga 10818659 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 agcgcgcggcggcgctgacg 57 |||||||||||||||||||| Sbjct: 9917021 agcgcgcggcggcgctgacg 9917040
>gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E24 genomic sequence, complete sequence Length = 111882 Score = 172 bits (87), Expect = 7e-40 Identities = 168/195 (86%) Strand = Plus / Minus Query: 1 gagtaccagtcgaaggtggcagcggtggccggcgagaagcgcgcggcggcgctgacgtcc 60 |||||| || ||||||||| ||||||||||||| |||| ||||||||||||||||| Sbjct: 97651 gagtacaagacgaaggtggaggcggtggccggcgggaagaaggcggcggcgctgacgtcg 97592 Query: 61 gggtccatctacttggtgagcgccgggacgagcgactacgtgcagaactactacgtcaac 120 | |||||||||| |||| |||||||| || ||||||| |||||||||||||||||||||| Sbjct: 97591 gagtccatctacgtggtcagcgccggcaccagcgacttcgtgcagaactactacgtcaac 97532 Query: 121 gccatgctcgccgccgcctacacccccgaccagttcgccgacgcgctcatgcagccattc 180 | ||||| | |||| |||||||||||||||||||| |||||| ||||||||||| ||| Sbjct: 97531 ccgatgctgggcgccacctacacccccgaccagttctccgacgtcctcatgcagcccttc 97472 Query: 181 acggccttcgtcgag 195 || ||||| ||||| Sbjct: 97471 accaccttcatcgag 97457 Score = 93.7 bits (47), Expect = 5e-16 Identities = 67/74 (90%) Strand = Plus / Minus Query: 381 gaagcggcactcggacctcaagctcgtcgtcttggacatctancacccgctcctcaacct 440 ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| |||| Sbjct: 95117 gaagcagcactcggacctcaagctcgtcgtcttcgacatctacaacccgctcctcgacct 95058 Query: 441 cgtcgccgacccca 454 |||| || |||||| Sbjct: 95057 cgtcaccaacccca 95044 Score = 83.8 bits (42), Expect = 5e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 197 ggctgtacgggctgggcgcacggcggatcggggtgacgtcgctgccgcccatggggtgcc 256 |||||||||| | ||| || |||||||||| ||||||||||||||||| |||||||||| Sbjct: 95292 ggctgtacggacagggggcgaggcggatcggcgtgacgtcgctgccgccgatggggtgcc 95233 Query: 257 tcccggcgtc 266 |||||||||| Sbjct: 95232 tcccggcgtc 95223 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 466 ttcttcgagtctcggcgtgcgtgctgcggga 496 ||||||||||||||| | ||||||||||||| Sbjct: 94764 ttcttcgagtctcggagagcgtgctgcggga 94734
>gb|AY194234.1| Oryza sativa (japonica cultivar-group) putative lipase (LIP1) gene, complete cds Length = 2664 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 209 tgggcgcacggcggatcggggtgacgtcgctgccgcccatggggtgcctcccggcg 264 |||| |||||||| ||||| ||||||||||||||||| |||| ||||| |||||| Sbjct: 1832 tgggagcacggcgcatcggcgtgacgtcgctgccgccgttgggctgcctaccggcg 1887
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 209 tgggcgcacggcggatcggggtgacgtcgctgccgcccatggggtgcctcccggcg 264 |||| |||||||| ||||| ||||||||||||||||| |||| ||||| |||||| Sbjct: 2515895 tgggagcacggcgcatcggcgtgacgtcgctgccgccgttgggctgcctaccggcg 2515950 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 aacgccatgctcgccgccgcc 138 ||||||||||||||||||||| Sbjct: 2581781 aacgccatgctcgccgccgcc 2581761
>dbj|AP003767.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0036F10 Length = 149415 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 209 tgggcgcacggcggatcggggtgacgtcgctgccgcccatggggtgcctcccggcg 264 |||| |||||||| ||||| ||||||||||||||||| |||| ||||| |||||| Sbjct: 147353 tgggagcacggcgcatcggcgtgacgtcgctgccgccgttgggctgcctaccggcg 147408
>dbj|AP003632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0624B04 Length = 72745 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 209 tgggcgcacggcggatcggggtgacgtcgctgccgcccatggggtgcctcccggcg 264 |||| |||||||| ||||| ||||||||||||||||| |||| ||||| |||||| Sbjct: 15097 tgggagcacggcgcatcggcgtgacgtcgctgccgccgttgggctgcctaccggcg 15152
>dbj|AK109420.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-D07, full insert sequence Length = 1257 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 209 tgggcgcacggcggatcggggtgacgtcgctgccgcccatggggtgcctcccggcg 264 |||| |||||||| ||||| ||||||||||||||||| |||| ||||| |||||| Sbjct: 690 tgggagcacggcgcatcggcgtgacgtcgctgccgccgttgggctgcctaccggcg 745
>dbj|AK073593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046C23, full insert sequence Length = 1246 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 209 tgggcgcacggcggatcggggtgacgtcgctgccgcccatggggtgcctcccggcg 264 |||| |||||||| ||||| ||||||||||||||||| |||| ||||| |||||| Sbjct: 676 tgggagcacggcgcatcggcgtgacgtcgctgccgccgttgggctgcctaccggcg 731
>dbj|AK060175.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A01, full insert sequence Length = 1353 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 209 tgggcgcacggcggatcggggtgacgtcgctgccgcccatggggtgcctcccggcg 264 |||| |||||||| ||||| ||||||||||||||||| |||| ||||| |||||| Sbjct: 671 tgggagcacggcgcatcggcgtgacgtcgctgccgccgttgggctgcctaccggcg 726
>gb|AY057933.1| Bromus inermis stress-inducible membrane pore protein (BG15) mRNA, complete cds Length = 819 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 424 cacccgctcctcaacctcgtcgccgac 450 |||||||||||||||| |||||||||| Sbjct: 152 cacccgctcctcaaccgcgtcgccgac 178
>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08, from chromosome 3, complete sequence Length = 108833 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 424 cacccgctcctcaacctcgtcgccga 449 |||||||||||||||| ||||||||| Sbjct: 34354 cacccgctcctcaaccgcgtcgccga 34329
>dbj|AK063714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C03, full insert sequence Length = 839 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 424 cacccgctcctcaacctcgtcgccga 449 |||||||||||||||| ||||||||| Sbjct: 189 cacccgctcctcaaccgcgtcgccga 214
>gb|AY103951.1| Zea mays PCO106933 mRNA sequence Length = 2052 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 1 gagtaccagtcgaaggtggcagcggtggccggcg 34 ||||||||| ||||| |||| ||||||||||||| Sbjct: 1666 gagtaccagacgaagctggcggcggtggccggcg 1699 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 232 acgtcgctgccgcccatggggtgcctcccggcgtccgtcac 272 |||||||||||||| |||| ||||| ||||||||| |||| Sbjct: 1897 acgtcgctgccgccgctgggctgcctgccggcgtccatcac 1937 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 agcgactacgtgcagaactactac 114 ||||||| |||||||||||||||| Sbjct: 1756 agcgacttcgtgcagaactactac 1779
>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence Length = 114045 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 23 cggtggccggcgagaagcgcgcggcggcg 51 ||||||||| |||||||||||| |||||| Sbjct: 34780 cggtggccgccgagaagcgcgccgcggcg 34808
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 110 actacgtcaacgccatgctcgccgccgcc 138 ||||||||| ||||||| ||||||||||| Sbjct: 5535125 actacgtcagcgccatggtcgccgccgcc 5535153
>gb|AY657045.1| Synthetic construct Peudomonas aeruginosa clone FLH031886.01F PA5269 gene, partial cds Length = 276 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 tcaacgccatgctcgccgccg 136 ||||||||||||||||||||| Sbjct: 185 tcaacgccatgctcgccgccg 205
>gb|AY349011.1| Burkholderia cepacia phage Bcep22, complete genome Length = 63882 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 27 ggccggcgagaagcgcgcggcggcg 51 |||||||| |||||||||||||||| Sbjct: 23379 ggccggcgtgaagcgcgcggcggcg 23403
>gb|AY772719.1| Ajellomyces capsulatus Sec31 mRNA, partial cds Length = 3819 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 230 tgacgtcgctgccgcccatgg 250 ||||||||||||||||||||| Sbjct: 2307 tgacgtcgctgccgcccatgg 2327
>gb|AE004939.1| Pseudomonas aeruginosa PAO1, section 500 of 529 of the complete genome Length = 10294 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 tcaacgccatgctcgccgccg 136 ||||||||||||||||||||| Sbjct: 8923 tcaacgccatgctcgccgccg 8943
>dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0710H01 Length = 187107 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 aacgccatgctcgccgccgcc 138 ||||||||||||||||||||| Sbjct: 37122 aacgccatgctcgccgccgcc 37102
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 125 tgctcgccgccgcctacacccccgaccag 153 ||||||||||| || |||||||||||||| Sbjct: 149696 tgctcgccgccaccgacacccccgaccag 149724
>ref|XM_507055.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1202_E07.32 mRNA Length = 1810 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 cggacgcggccaagaagcgg 387 |||||||||||||||||||| Sbjct: 415 cggacgcggccaagaagcgg 396
>ref|XM_468435.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1656 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 cggacgcggccaagaagcgg 387 |||||||||||||||||||| Sbjct: 257 cggacgcggccaagaagcgg 238
>ref|NM_191862.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1092 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 139 tacacccccgaccagttcgccgacgcgctcat 170 ||||| ||||| |||||||||||| ||||||| Sbjct: 559 tacactcccgagcagttcgccgactcgctcat 590
>gb|BT018573.1| Zea mays clone EL01N0443D05.d mRNA sequence Length = 1450 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 acgccatgctcgccgccgcc 138 |||||||||||||||||||| Sbjct: 685 acgccatgctcgccgccgcc 666
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 cgtcggacgcggccaagaagcggc 388 ||||||| |||||||||||||||| Sbjct: 1451069 cgtcggaggcggccaagaagcggc 1451046
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 227 gggtgacgtcgctgccgcccatgg 250 |||||||||||| ||||||||||| Sbjct: 5340381 gggtgacgtcgccgccgcccatgg 5340358
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 cctcaacctcgtcgccgacc 451 |||||||||||||||||||| Sbjct: 237552 cctcaacctcgtcgccgacc 237571
>emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome; segment 5/13 Length = 348264 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 cgtcggacgcggccaagaagcggc 388 ||||||| |||||||||||||||| Sbjct: 68485 cgtcggaggcggccaagaagcggc 68462
>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 5/14 Length = 299450 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 cgtcggacgcggccaagaagcggc 388 ||||||| |||||||||||||||| Sbjct: 134977 cgtcggaggcggccaagaagcggc 134954
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 gctcgccgccgcctacacccccga 149 ||||||||||||| |||||||||| Sbjct: 7047 gctcgccgccgccgacacccccga 7024
>ref|NM_176106.1| Drosophila melanogaster sticks and stones CG33141-RA (sns), mRNA Length = 8023 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ggtggcagcggtggccggcg 34 |||||||||||||||||||| Sbjct: 4442 ggtggcagcggtggccggcg 4461
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 cccgaccagttcgccgacgcgctc 168 |||||||||||||||| ||||||| Sbjct: 1223349 cccgaccagttcgccgccgcgctc 1223372
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 cggacgcggccaagaagcgg 387 |||||||||||||||||||| Sbjct: 35241949 cggacgcggccaagaagcgg 35241968
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 139 tacacccccgaccagttcgccgacgcgctcat 170 ||||| ||||| |||||||||||| ||||||| Sbjct: 30356410 tacactcccgagcagttcgccgactcgctcat 30356441
>gb|AC007471.4|AC007471 Drosophila melanogaster, chromosome 2R, region 44F-45A, BAC clone BACR02C23, complete sequence Length = 168601 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ggtggcagcggtggccggcg 34 |||||||||||||||||||| Sbjct: 45119 ggtggcagcggtggccggcg 45138
>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0042A10 Length = 146840 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 139 tacacccccgaccagttcgccgacgcgctcat 170 ||||| ||||| |||||||||||| ||||||| Sbjct: 144729 tacactcccgagcagttcgccgactcgctcat 144760
>dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456A01 Length = 143710 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 139 tacacccccgaccagttcgccgacgcgctcat 170 ||||| ||||| |||||||||||| ||||||| Sbjct: 42137 tacactcccgagcagttcgccgactcgctcat 42168
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 tgaccgccgggttcttcgag 474 |||||||||||||||||||| Sbjct: 5568105 tgaccgccgggttcttcgag 5568124
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 gccggcgagaagcgcgcggc 47 |||||||||||||||||||| Sbjct: 2291391 gccggcgagaagcgcgcggc 2291410
>gb|AC137074.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0022M22, from chromosome 3, complete sequence Length = 124166 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 agcgcgcggcggcgctgacg 57 |||||||||||||||||||| Sbjct: 81289 agcgcgcggcggcgctgacg 81308
>gb|AF254867.1|AF254867 Drosophila melanogaster SNS (sns) mRNA, complete cds Length = 8035 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ggtggcagcggtggccggcg 34 |||||||||||||||||||| Sbjct: 4448 ggtggcagcggtggccggcg 4467
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 gctcgccgccgcctacaccc 145 |||||||||||||||||||| Sbjct: 3072848 gctcgccgccgcctacaccc 3072829
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 cggacgcggccaagaagcgg 387 |||||||||||||||||||| Sbjct: 53999 cggacgcggccaagaagcgg 54018
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 cggacgcggccaagaagcgg 387 |||||||||||||||||||| Sbjct: 137305 cggacgcggccaagaagcgg 137324
>dbj|AK100771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120A02, full insert sequence Length = 1810 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 cggacgcggccaagaagcgg 387 |||||||||||||||||||| Sbjct: 415 cggacgcggccaagaagcgg 396
>dbj|AK070946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074K21, full insert sequence Length = 2149 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 139 tacacccccgaccagttcgccgacgcgctcat 170 ||||| ||||| |||||||||||| ||||||| Sbjct: 1200 tacactcccgagcagttcgccgactcgctcat 1231
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 121 gccatgctcgccgccgcctacacccccg 148 |||||| ||||||||| ||||||||||| Sbjct: 2506195 gccatggtcgccgccgactacacccccg 2506222
>dbj|AK060511.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D06, full insert sequence Length = 1656 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 cggacgcggccaagaagcgg 387 |||||||||||||||||||| Sbjct: 257 cggacgcggccaagaagcgg 238
>gb|AE003835.4| Drosophila melanogaster chromosome 2R, section 15 of 73 of the complete sequence Length = 271696 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ggtggcagcggtggccggcg 34 |||||||||||||||||||| Sbjct: 58239 ggtggcagcggtggccggcg 58258 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,328,676 Number of Sequences: 3902068 Number of extensions: 2328676 Number of successful extensions: 48779 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47026 Number of HSP's gapped (non-prelim): 1752 length of query: 496 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 474 effective length of database: 17,147,199,772 effective search space: 8127772691928 effective search space used: 8127772691928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
