ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast78b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
2dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
3dbj|AP005760.3| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
4gb|AC123848.4| Mus musculus BAC clone RP23-459I1 from chromosome... 52 0.002
5gb|AC151475.1| Mus musculus BAC clone RP23-283P1 from 5, complet... 52 0.002
6gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.41
7ref|XM_476092.1| Oryza sativa (japonica cultivar-group), predic... 44 0.41
8gb|AC132493.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.41
9gb|AY596547.1| Saccharum officinarum clone SCAGLR1043G02, comple... 44 0.41
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
11dbj|AK069743.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.41
12gb|AF119361.1|AF119361 Frankia sp. EuIK1 NifK (nifK), NifE (nifE... 44 0.41
13gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 1.6
14gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
15emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.6
16emb|BX640425.1| Bordetella parapertussis strain 12822, complete ... 42 1.6
17emb|BX640421.1| Bordetella pertussis strain Tohama I, complete g... 42 1.6
18emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 42 1.6
19gb|DQ351275.1| Streptomyces sp. NRRL 30748 meridamycin biosynthe... 42 1.6
20gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.6
21dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
22gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 42 1.6
23gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.6
24gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 42 1.6
25gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
26gb|M22763.1|LYSPALPA Lysobacter enzymogenes alpha-lytic protease... 42 1.6
27gb|J04052.1|MXBPALP L.enzymogenes alpha-LP gene encoding prepro-... 42 1.6
28gb|L00674.1|AVIHUPABYC Azotobacter chroococcum hydrogenase acces... 42 1.6
29ref|NM_188031.1| Oryza sativa (japonica cultivar-group), Ozsa845... 40 6.5
30ref|XM_467137.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.5
31gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 40 6.5
32gb|AY658871.1| Synthetic construct Peudomonas aeruginosa clone F... 40 6.5
33gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 6.5
34gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 6.5
35emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genom... 40 6.5
36gb|DQ372923.1| Bacteriophage mu1/6, complete genome 40 6.5
37emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete ... 40 6.5
38emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4,... 40 6.5
39emb|AL662938.3|OSJN00138 Oryza sativa genomic DNA, chromosome 4,... 40 6.5
40emb|AL645771.1|SCSCP2 Streptomyces coelicolor A3(2) plasmid SCP2 40 6.5
41emb|AJ414671.1|SCO414671 Streptomyces coelicolor plasmid 2 (SCP2*) 40 6.5
42gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 6.5
43gb|AE012337.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.5
44gb|AE012304.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.5
45gb|AE012250.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.5
46gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequ... 40 6.5
47ref|XM_688980.1| PREDICTED: Danio rerio similar to zinc finger p... 40 6.5
48gb|L78063.1| Anacampseros kurtzii 18S ribosomal RNA gene, partia... 40 6.5
49gb|L78060.1| Xenia vulcanensis 18S ribosomal RNA gene, partial s... 40 6.5
50gb|L78028.1| Grahamia bracteata 18S ribosomal RNA gene, partial ... 40 6.5
51gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 6.5
52gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.5
53gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.5
54dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
55dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
56dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
57gb|AF326501.1|AF326501 Zea mays tonoplast membrane integral prot... 40 6.5
58gb|AE009634.1| Brucella melitensis 16M chromosome I, section 191... 40 6.5
59gb|AE004501.1| Pseudomonas aeruginosa PAO1, section 62 of 529 of... 40 6.5
60dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
61dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
62dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 6.5
63gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 40 6.5
64dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.5
65dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
66dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
67dbj|AB114830.1| Oryza sativa (japonica cultivar-group) OsTIP2 mR... 40 6.5
68ref|NM_210802.1| Eremothecium gossypii AFL102Wp (AFL102W), mRNA 40 6.5
69dbj|AK064728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
70gb|AY105015.1| Zea mays PCO137646 mRNA sequence 40 6.5
71gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 6.5
72emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 40 6.5
73emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 40 6.5 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                             
Query: 383      agcgcgctgatgccggcgacggcgtgcccgcccgcgccgcggaag 427
                |||||||||  ||||||||||| ||||||||| ||||||||||||
Sbjct: 26779229 agcgcgctgcggccggcgacggtgtgcccgccggcgccgcggaag 26779185



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 20       gaattggcggcgctccggccgatcc 44
                |||||||| ||||||||||||||||
Sbjct: 26779451 gaattggccgcgctccggccgatcc 26779427
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>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0051O02
          Length = 169532

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 383   agcgcgctgatgccggcgacggcgtgcccgcccgcgccgcggaag 427
             |||||||||  ||||||||||| ||||||||| ||||||||||||
Sbjct: 33855 agcgcgctgcggccggcgacggtgtgcccgccggcgccgcggaag 33811



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 20    gaattggcggcgctccggccgatcc 44
             |||||||| ||||||||||||||||
Sbjct: 34077 gaattggccgcgctccggccgatcc 34053
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>dbj|AP005760.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1047G05
          Length = 145431

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                           
Query: 383    agcgcgctgatgccggcgacggcgtgcccgcccgcgccgcggaag 427
              |||||||||  ||||||||||| ||||||||| ||||||||||||
Sbjct: 136692 agcgcgctgcggccggcgacggtgtgcccgccggcgccgcggaag 136648



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 20     gaattggcggcgctccggccgatcc 44
              |||||||| ||||||||||||||||
Sbjct: 136914 gaattggccgcgctccggccgatcc 136890
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>gb|AC123848.4| Mus musculus BAC clone RP23-459I1 from chromosome 5, complete sequence
          Length = 184292

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 182   gccgccgacgtcacaggctgcgtcac 207
             ||||||||||||||||||||||||||
Sbjct: 71709 gccgccgacgtcacaggctgcgtcac 71684
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>gb|AC151475.1| Mus musculus BAC clone RP23-283P1 from 5, complete sequence
          Length = 171663

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 182    gccgccgacgtcacaggctgcgtcac 207
              ||||||||||||||||||||||||||
Sbjct: 131711 gccgccgacgtcacaggctgcgtcac 131686
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>gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617H07,
             complete sequence
          Length = 114135

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 166   cgacgacaacgacgcggccgccgacg 191
             |||||||| |||||||||||||||||
Sbjct: 90198 cgacgacagcgacgcggccgccgacg 90173
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>ref|XM_476092.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1008

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 166 cgacgacaacgacgcggccgccgacg 191
           |||||||| |||||||||||||||||
Sbjct: 150 cgacgacagcgacgcggccgccgacg 125
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>gb|AC132493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636E04,
             complete sequence
          Length = 141171

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 166   cgacgacaacgacgcggccgccgacg 191
             |||||||| |||||||||||||||||
Sbjct: 21008 cgacgacagcgacgcggccgccgacg 20983
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>gb|AY596547.1| Saccharum officinarum clone SCAGLR1043G02, complete sequence
          Length = 984

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 429 cggcgccggtgccgacgaggaa 450
           ||||||||||||||||||||||
Sbjct: 481 cggcgccggtgccgacgaggaa 460
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 166     cgacgacaacgacgcggccgccgacg 191
               |||||||| |||||||||||||||||
Sbjct: 5883434 cgacgacagcgacgcggccgccgacg 5883409
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>dbj|AK069743.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028G13, full
           insert sequence
          Length = 1368

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 166 cgacgacaacgacgcggccgccgacg 191
           |||||||| |||||||||||||||||
Sbjct: 362 cgacgacagcgacgcggccgccgacg 337
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>gb|AF119361.1|AF119361 Frankia sp. EuIK1 NifK (nifK), NifE (nifE), NifN (nifN), NifX (nifX),
             NifW (nifW), NifZ (nifZ), NifB (nifB), NifV (nifV), NifS
             (nifS), ferredoxin oxidoreductase a-subunit, ferredoxin
             oxidoreductase b-subunit, and ferredoxin I (fdxI) genes,
             complete cds; and unknown genes
          Length = 15056

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 427   gtcggcgccggtgccgacgagg 448
             ||||||||||||||||||||||
Sbjct: 11237 gtcggcgccggtgccgacgagg 11258
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 92      gccgttgccgacgacaccggc 112
               |||||||||||||||||||||
Sbjct: 1195001 gccgttgccgacgacaccggc 1194981
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>gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0012D19,
             complete sequence
          Length = 153276

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 268   cgtcgacaccggcttcgccac 288
             |||||||||||||||||||||
Sbjct: 93373 cgtcgacaccggcttcgccac 93353
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>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16
          Length = 346362

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 360    tcaccacgccgaccacggccgacagcgcg 388
              |||||||||||| ||||| ||||||||||
Sbjct: 309763 tcaccacgccgatcacggtcgacagcgcg 309735
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>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14
          Length = 348257

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 360    tcaccacgccgaccacggccgacagcgcg 388
              |||||||||||| ||||| ||||||||||
Sbjct: 206960 tcaccacgccgatcacggtcgacagcgcg 206932
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>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12
          Length = 349726

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 360    tcaccacgccgaccacggccgacagcgcg 388
              |||||||||||| ||||| ||||||||||
Sbjct: 191962 tcaccacgccgatcacggtcgacagcgcg 191934
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>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 455   gcgccgctgcagcagcggctc 475
             |||||||||||||||||||||
Sbjct: 19948 gcgccgctgcagcagcggctc 19928
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>gb|DQ351275.1| Streptomyces sp. NRRL 30748 meridamycin biosynthetic gene cluster and
            flanking regions
          Length = 116831

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 260  gacgacggcgtcgacaccggc 280
            |||||||||||||||||||||
Sbjct: 2984 gacgacggcgtcgacaccggc 2964
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 455     gcgccgctgcagcagcggctc 475
               |||||||||||||||||||||
Sbjct: 4453291 gcgccgctgcagcagcggctc 4453271
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 268      cgtcgacaccggcttcgccac 288
                |||||||||||||||||||||
Sbjct: 15034754 cgtcgacaccggcttcgccac 15034734
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 270     tcgacaccggcttcgccacgc 290
               |||||||||||||||||||||
Sbjct: 2839815 tcgacaccggcttcgccacgc 2839835
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 253    gctgcaagacgacggcgtcga 273
              |||||||||||||||||||||
Sbjct: 302328 gctgcaagacgacggcgtcga 302348



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 255     tgcaagacgacggcgtcgac 274
               ||||||||||||||||||||
Sbjct: 1968883 tgcaagacgacggcgtcgac 1968902



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 383     agcgcgctgatgccggcgacggcg 406
               |||||| |||||||||||||||||
Sbjct: 1349456 agcgcgttgatgccggcgacggcg 1349433
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 364    cacgccgaccacggccgacagcgcg 388
              ||||||||| |||||||||||||||
Sbjct: 603401 cacgccgacgacggccgacagcgcg 603377
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 268      cgtcgacaccggcttcgccac 288
                |||||||||||||||||||||
Sbjct: 15042995 cgtcgacaccggcttcgccac 15042975
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>gb|M22763.1|LYSPALPA Lysobacter enzymogenes alpha-lytic protease gene, complete cds
          Length = 1745

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 331 cggcgccgctgagggcgacga 351
           |||||||||||||||||||||
Sbjct: 794 cggcgccgctgagggcgacga 774
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>gb|J04052.1|MXBPALP L.enzymogenes alpha-LP gene encoding prepro-alpha-lytic protease,
           complete cds
          Length = 1473

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 331 cggcgccgctgagggcgacga 351
           |||||||||||||||||||||
Sbjct: 793 cggcgccgctgagggcgacga 773
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>gb|L00674.1|AVIHUPABYC Azotobacter chroococcum hydrogenase accessory protein operon
            (hupABYC) genes, complete cds
          Length = 3880

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 451  gcgcgcgccgctgcagcagcggctc 475
            ||||||||||| |||||||||||||
Sbjct: 3523 gcgcgcgccgcggcagcagcggctc 3499
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>ref|NM_188031.1| Oryza sativa (japonica cultivar-group), Ozsa8451 predicted mRNA
          Length = 3243

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  gggaggacgacggcacggcc 94
           ||||||||||||||||||||
Sbjct: 685 gggaggacgacggcacggcc 666
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>ref|XM_467137.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 747

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 382 cagcgcgctgatgccggcgacggcgtgc 409
           |||| ||||||||||||||||| |||||
Sbjct: 417 cagctcgctgatgccggcgacgccgtgc 390
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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 360     tcaccacgccgaccacggccgaca 383
               |||||||||||||||||| |||||
Sbjct: 2034275 tcaccacgccgaccacggacgaca 2034252
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>gb|AY658871.1| Synthetic construct Peudomonas aeruginosa clone FLH042178.01F
           PA0660 gene, partial cds
          Length = 969

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 cggcgtgcccgcccgcgccg 421
           ||||||||||||||||||||
Sbjct: 460 cggcgtgcccgcccgcgccg 441
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 317     ccgcgagacggctgcggcgc 336
               ||||||||||||||||||||
Sbjct: 2138501 ccgcgagacggctgcggcgc 2138482
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 360     tcaccacgccgaccacggcc 379
               ||||||||||||||||||||
Sbjct: 2341340 tcaccacgccgaccacggcc 2341359
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>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16
          Length = 349981

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   gtcggcgccggtgccgacga 446
             ||||||||||||||||||||
Sbjct: 63233 gtcggcgccggtgccgacga 63252
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>gb|DQ372923.1| Bacteriophage mu1/6, complete genome
          Length = 38194

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 333   gcgccgctgagggcgacgagggca 356
             ||||||| ||||||||||||||||
Sbjct: 22984 gcgccgccgagggcgacgagggca 23007
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>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29
          Length = 292100

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    gacgacggcgtcgacaccgg 279
              ||||||||||||||||||||
Sbjct: 163837 gacgacggcgtcgacaccgg 163856
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>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16,
              complete sequence
          Length = 146313

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    cgacgacaacgacgcggccg 185
              ||||||||||||||||||||
Sbjct: 108459 cgacgacaacgacgcggccg 108440
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>emb|AL662938.3|OSJN00138 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ990528_30,
            complete sequence
          Length = 88547

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  cgacgacaacgacgcggccg 185
            ||||||||||||||||||||
Sbjct: 3973 cgacgacaacgacgcggccg 3954
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>emb|AL645771.1|SCSCP2 Streptomyces coelicolor A3(2) plasmid SCP2
          Length = 31317

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 437   gtgccgacgaggaagcgcgcgccg 460
             ||||||||||||||||||| ||||
Sbjct: 29477 gtgccgacgaggaagcgcgggccg 29454
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>emb|AJ414671.1|SCO414671 Streptomyces coelicolor plasmid 2 (SCP2*)
          Length = 7686

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 437  gtgccgacgaggaagcgcgcgccg 460
            ||||||||||||||||||| ||||
Sbjct: 1201 gtgccgacgaggaagcgcgggccg 1224
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 424     gaagtcggcgccggtgccga 443
               ||||||||||||||||||||
Sbjct: 3791780 gaagtcggcgccggtgccga 3791761
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>gb|AE012337.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 245
            of 460 of the complete genome
          Length = 11412

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 393  tgccggcgacggcgtgcccg 412
            ||||||||||||||||||||
Sbjct: 7422 tgccggcgacggcgtgcccg 7441
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>gb|AE012304.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 212
            of 460 of the complete genome
          Length = 11084

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 451  gcgcgcgccgctgcagcagc 470
            ||||||||||||||||||||
Sbjct: 3754 gcgcgcgccgctgcagcagc 3773
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>gb|AE012250.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 158
            of 460 of the complete genome
          Length = 10507

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 323  gacggctgcggcgccgctga 342
            ||||||||||||||||||||
Sbjct: 7645 gacggctgcggcgccgctga 7664
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>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    cgacggcgtcgacaccggct 281
              ||||||||||||||||||||
Sbjct: 531502 cgacggcgtcgacaccggct 531521
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>ref|XM_688980.1| PREDICTED: Danio rerio similar to zinc finger protein 294
            (LOC565710), mRNA
          Length = 2127

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 239  ccaattgcgccactgctgca 258
            ||||||||||||||||||||
Sbjct: 1278 ccaattgcgccactgctgca 1259
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>gb|L78063.1| Anacampseros kurtzii 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 581

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 401 acggcgtgcccgcccgcgcc 420
           ||||||||||||||||||||
Sbjct: 139 acggcgtgcccgcccgcgcc 158
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>gb|L78060.1| Xenia vulcanensis 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 602

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 401 acggcgtgcccgcccgcgcc 420
           ||||||||||||||||||||
Sbjct: 139 acggcgtgcccgcccgcgcc 158
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>gb|L78028.1| Grahamia bracteata 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           internal transcribed spacer 2, and 26S ribosomal RNA
           gene, complete sequence
          Length = 573

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 401 acggcgtgcccgcccgcgcc 420
           ||||||||||||||||||||
Sbjct: 144 acggcgtgcccgcccgcgcc 163
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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     gccgatccagacggccgtga 56
              ||||||||||||||||||||
Sbjct: 247829 gccgatccagacggccgtga 247848
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 323     gacggctgcggcgccgctga 342
               ||||||||||||||||||||
Sbjct: 3290445 gacggctgcggcgccgctga 3290426



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 451     gcgcgcgccgctgcagcagc 470
               ||||||||||||||||||||
Sbjct: 2636369 gcgcgcgccgctgcagcagc 2636350



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 393     tgccggcgacggcgtgcccg 412
               ||||||||||||||||||||
Sbjct: 2208396 tgccggcgacggcgtgcccg 2208377
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 454     cgcgccgctgcagcagcggc 473
               ||||||||||||||||||||
Sbjct: 2036640 cgcgccgctgcagcagcggc 2036621



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    ccggcttcgccacgccgctg 295
              ||||||||||||||||||||
Sbjct: 755905 ccggcttcgccacgccgctg 755924
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 166      cgacgacaacgacgcggccg 185
                ||||||||||||||||||||
Sbjct: 24548828 cgacgacaacgacgcggccg 24548809
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 382      cagcgcgctgatgccggcgacggcgtgc 409
                |||| ||||||||||||||||| |||||
Sbjct: 26627449 cagctcgctgatgccggcgacgccgtgc 26627476
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 75      gggaggacgacggcacggcc 94
               ||||||||||||||||||||
Sbjct: 9244736 gggaggacgacggcacggcc 9244717
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>gb|AF326501.1|AF326501 Zea mays tonoplast membrane integral protein ZmTIP2-1 mRNA,
           complete cds
          Length = 1110

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 382 cagcgcgctgatgccggcgacggcgtgc 409
           |||| |||||||||| ||||||||||||
Sbjct: 644 cagctcgctgatgcccgcgacggcgtgc 617
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>gb|AE009634.1| Brucella melitensis 16M chromosome I, section 191 of 195 of the
            complete sequence
          Length = 10029

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 360  tcaccacgccgaccacggccgaca 383
            |||||||||||||||||| |||||
Sbjct: 7208 tcaccacgccgaccacggacgaca 7231
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>gb|AE004501.1| Pseudomonas aeruginosa PAO1, section 62 of 529 of the complete
           genome
          Length = 10832

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 402 cggcgtgcccgcccgcgccg 421
           ||||||||||||||||||||
Sbjct: 601 cggcgtgcccgcccgcgccg 620
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>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0667A10
          Length = 152237

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    gggaggacgacggcacggcc 94
             ||||||||||||||||||||
Sbjct: 21330 gggaggacgacggcacggcc 21311
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>dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0011D01
          Length = 168655

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     gggaggacgacggcacggcc 94
              ||||||||||||||||||||
Sbjct: 145118 gggaggacgacggcacggcc 145099
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 414     ccgcgccgcggaagtcggcg 433
               ||||||||||||||||||||
Sbjct: 6415470 ccgcgccgcggaagtcggcg 6415451



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 366     cgccgaccacggccgacagc 385
               ||||||||||||||||||||
Sbjct: 3932957 cgccgaccacggccgacagc 3932976
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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 360     tcaccacgccgaccacggccgaca 383
               |||||||||||||||||| |||||
Sbjct: 2050703 tcaccacgccgaccacggacgaca 2050680
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 405     cgtgcccgcccgcgccgcgg 424
               ||||||||||||||||||||
Sbjct: 3003648 cgtgcccgcccgcgccgcgg 3003667
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>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0519E06
          Length = 170634

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 382    cagcgcgctgatgccggcgacggcgtgc 409
              |||| ||||||||||||||||| |||||
Sbjct: 169830 cagctcgctgatgccggcgacgccgtgc 169857
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>dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1112_F09
          Length = 139371

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 382   cagcgcgctgatgccggcgacggcgtgc 409
             |||| ||||||||||||||||| |||||
Sbjct: 61610 cagctcgctgatgccggcgacgccgtgc 61637
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>dbj|AB114830.1| Oryza sativa (japonica cultivar-group) OsTIP2 mRNA for tonoplast
           intrinsic protein, complete cds
          Length = 1013

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 382 cagcgcgctgatgccggcgacggcgtgc 409
           |||| ||||||||||||||||| |||||
Sbjct: 490 cagctcgctgatgccggcgacgccgtgc 463
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>ref|NM_210802.1| Eremothecium gossypii AFL102Wp (AFL102W), mRNA
          Length = 1665

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 37  gccgatccagacggccgtga 56
           ||||||||||||||||||||
Sbjct: 411 gccgatccagacggccgtga 430
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>dbj|AK064728.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-A10, full
           insert sequence
          Length = 873

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 382 cagcgcgctgatgccggcgacggcgtgc 409
           |||| ||||||||||||||||| |||||
Sbjct: 292 cagctcgctgatgccggcgacgccgtgc 265
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>gb|AY105015.1| Zea mays PCO137646 mRNA sequence
          Length = 1238

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 382 cagcgcgctgatgccggcgacggcgtgc 409
           |||| |||||||||| ||||||||||||
Sbjct: 643 cagctcgctgatgcccgcgacggcgtgc 616
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 398     gcgacggcgtgcccgcccgc 417
               ||||||||||||||||||||
Sbjct: 2084123 gcgacggcgtgcccgcccgc 2084104
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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 382    cagcgcgctgatgccggcgacggcgtgc 409
              |||| ||||||||||||||||| |||||
Sbjct: 332263 cagctcgctgatgccggcgacgccgtgc 332290



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 382    cagcgcgctgatgccggcgacggcgtgc 409
              |||| ||||||||||||||||| |||||
Sbjct: 250385 cagctcgctgatgccggcgacgccgtgc 250358
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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain
               2308
          Length = 2121359

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 360     tcaccacgccgaccacggccgaca 383
               |||||||||||||||||| |||||
Sbjct: 2047822 tcaccacgccgaccacggacgaca 2047799


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,813,426
Number of Sequences: 3902068
Number of extensions: 2813426
Number of successful extensions: 77014
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72936
Number of HSP's gapped (non-prelim): 4078
length of query: 478
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 456
effective length of database: 17,147,199,772
effective search space: 7819123096032
effective search space used: 7819123096032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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