ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast78b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late ... 30 1.4
2S26A6_HUMAN (Q9BXS9) Solute carrier family 26 member 6 (Pendrin-... 29 2.4
3CRUM1_HUMAN (P82279) Crumbs homolog 1 precursor 28 5.3
4EMID1_HUMAN (Q96A84) EMI domain-containing protein 1 precursor (... 28 6.9
5AROA1_BACHD (Q9KCA6) 3-phosphoshikimate 1-carboxyvinyltransferas... 27 9.0
6V1BR_HUMAN (P47901) Vasopressin V1b receptor (V1bR) (AVPR V1b) (... 27 9.0

>ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa|
           protein)
          Length = 201

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 83  RNLNDASPAQRPCDPSSYHESSD 15
           ++LN ASP+  P DPSS H++ D
Sbjct: 147 QSLNGASPSLTPSDPSSLHKNQD 169



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>S26A6_HUMAN (Q9BXS9) Solute carrier family 26 member 6 (Pendrin-like protein 1)|
           (Pendrin L1)
          Length = 759

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 366 EQMELNGSWMGAEEERWWRLLLDCTHSNYQTLM---RPVLLFIVTTSPCQDWVI 214
           E +E  G W  A     WR  L C+ +    L+    PVL+++    P +DW++
Sbjct: 39  EHLEELGRWGSAPRTHQWRTWLQCSRARAYALLLQHLPVLVWL-PRYPVRDWLL 91



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>CRUM1_HUMAN (P82279) Crumbs homolog 1 precursor|
          Length = 1406

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 5    CFADPMIHDNSTDRMAFVPATHHSNFCPIN 94
            CF++P IH N +DR+A    T    +  +N
Sbjct: 1181 CFSNPCIHGNCSDRVAAYHCTCEPGYTGVN 1210



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>EMID1_HUMAN (Q96A84) EMI domain-containing protein 1 precursor (Protein Emu1)|
           (Emilin and multimerin domain-containing protein 1)
          Length = 441

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 303 LDCTHSNYQTLMRPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSL 163
           + C  S+Y+T++RP    +      ++W  C   + + C    S SL
Sbjct: 66  MSCPGSSYRTVVRPTYKVMYKIVTAREWRCCPGHSGVSCEEASSASL 112



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>AROA1_BACHD (Q9KCA6) 3-phosphoshikimate 1-carboxyvinyltransferase 1 (EC|
           2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase
           1) (EPSP synthase 1) (EPSPS 1)
          Length = 431

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 164 REPEKRLPHPRKAAGAQITQS*HGEVVTINNNTGRI 271
           + P KR+  P K+ GAQI    HG +  ++   G++
Sbjct: 122 KRPMKRVTEPLKSMGAQIDGRDHGNLTPLSIRGGQL 157



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>V1BR_HUMAN (P47901) Vasopressin V1b receptor (V1bR) (AVPR V1b) (Vasopressin V3|
           receptor) (AVPR V3) (Antidiuretic hormone receptor 1b)
          Length = 424

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = -3

Query: 223 LGNLRACCLPWMW*PF----LRLPLRN 155
           LGNL +CC PW++  F    L  PLR+
Sbjct: 326 LGNLNSCCNPWIYMGFNSHLLPRPLRH 352


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,645,304
Number of Sequences: 219361
Number of extensions: 1097180
Number of successful extensions: 2082
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2082
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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