ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast78b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VE2_HPV10 (P36781) Regulatory protein E2 31 1.4
2ZN672_HUMAN (Q499Z4) Zinc finger protein 672 30 1.9
3ZN672_MOUSE (Q99LH4) Zinc finger protein 672 30 3.2
4ZN672_RAT (Q642B2) Zinc finger protein 672 29 4.1

>VE2_HPV10 (P36781) Regulatory protein E2|
          Length = 376

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 413 TTNEITSPSGFCASPSTPASADAQTSRCSMPAQ 315
           +T EI++P   C S +TPAS  AQ      P Q
Sbjct: 205 STREISTPGPVCTSNTTPASTQAQVGASEGPEQ 237



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>ZN672_HUMAN (Q499Z4) Zinc finger protein 672|
          Length = 452

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 414 HHQRDHVPERLLRQPLDAGQRRRADLPVQHARAMPV 307
           H +R H+PER  R PL A   R++ L    ARA P+
Sbjct: 117 HRRRQHLPERPRRCPLCARTFRQSALLFHQARAHPL 152



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>ZN672_MOUSE (Q99LH4) Zinc finger protein 672|
          Length = 468

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 414 HHQRDHVPERLLRQPLDAGQRRRADLPVQHARAMP 310
           H  R H PE+  R PL A   R++ LP   ARA P
Sbjct: 118 HRARQHPPEKPHRCPLCARSFRQSALPFHLARAHP 152



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>ZN672_RAT (Q642B2) Zinc finger protein 672|
          Length = 468

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 414 HHQRDHVPERLLRQPLDAGQRRRADLPVQHARAMP 310
           H  R H PE+  R PL A   R++ LP   ARA P
Sbjct: 118 HRVRQHPPEKPHRCPLCARSFRQSALPFHLARAHP 152


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,004,392
Number of Sequences: 219361
Number of extensions: 392491
Number of successful extensions: 1299
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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