ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast78b05 |
|---|---|
| Clone Library Name | barley_pub |
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 127 bits (320), Expect = 1e-29 Identities = 69/106 (65%), Positives = 70/106 (66%) Frame = +2 Query: 122 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 301 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 9 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQVATAPSPVTTSPGSTASSPSG 68 Query: 302 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKASR 439 KKTLRQGVVVIT ETGKWHVVMACRDFLKAS+ Sbjct: 69 KKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKASK 114
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 126 bits (317), Expect = 2e-29 Identities = 68/106 (64%), Positives = 69/106 (65%) Frame = +2 Query: 122 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 301 TLSVPKKGSSMGA AVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 9 TLSVPKKGSSMGAAAVKDTAAFLGVSSKAKKASLAVRTQVATAPSSVTTSPGSATAKPSG 68 Query: 302 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKASR 439 KKTLRQGVVVIT ETGKWHVVMACRDFLKAS+ Sbjct: 69 KKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKASK 114
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 62.0 bits (149), Expect = 7e-10 Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 12/117 (10%) Frame = +2 Query: 125 LSVPKKGSSMGAVAVKDTAAFLGVSS----KAKKASLAVRTQ--------XXXXXXXXXX 268 LS+PK+G S +V +KD++ F G+S K++ +S +R + Sbjct: 13 LSIPKEGKS--SVCLKDSSLF-GISFSDHLKSEFSSSTLRCKRELNQQIGAIRAQTTATE 69 Query: 269 XXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKASR 439 KKTLR+G VVIT ETGKWHV+MACRDFLKA R Sbjct: 70 SPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAER 126
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 57.8 bits (138), Expect = 1e-08 Identities = 42/118 (35%), Positives = 56/118 (47%), Gaps = 12/118 (10%) Frame = +2 Query: 122 TLSVPKKGSSMGAVAVKDTAAFLGVSS-----KAKKASLAVRTQ-------XXXXXXXXX 265 + S+PK+G +GA ++KD+ F GVSS K S A+R + Sbjct: 12 SFSIPKEGK-IGA-SLKDSTLF-GVSSLSDSLKGDFTSSALRCKELRQKVGAVRAETAAP 68 Query: 266 XXXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKASR 439 KKTLR+G VVIT E+GKWHV+MACRD+LKA+R Sbjct: 69 ATPAVNKSSSEGKKTLRKGNVVITGASSGLGLATAKALAESGKWHVIMACRDYLKAAR 126
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 57.8 bits (138), Expect = 1e-08 Identities = 26/46 (56%), Positives = 29/46 (63%) Frame = +2 Query: 302 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKASR 439 KKTLR+G V+IT ETGKWHV+MACRDFLKA R Sbjct: 80 KKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMACRDFLKAER 125
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 57.4 bits (137), Expect = 2e-08 Identities = 26/46 (56%), Positives = 29/46 (63%) Frame = +2 Query: 302 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKASR 439 KKTLR+G VV+T ETGKWHV+MACRDFLKA R Sbjct: 87 KKTLRKGNVVVTGASSGLGLATAKALAETGKWHVIMACRDFLKAER 132
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 54.7 bits (130), Expect = 1e-07 Identities = 25/46 (54%), Positives = 29/46 (63%) Frame = +2 Query: 302 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKASR 439 KKTLR+G VV+T ETGKW+V+MACRDFLKA R Sbjct: 83 KKTLRKGNVVVTGASSGLGLATAKALAETGKWNVIMACRDFLKAER 128
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 53.5 bits (127), Expect = 2e-07 Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = +2 Query: 158 AVAVKDTAAFLGVSSK-AKKASLAVRTQXXXXXXXXXXXXXXXXXXXXXKKTLRQGVVVI 334 A +K A LG+ +K +S+A+R Q KKT+R G +I Sbjct: 33 ADGLKLDATSLGLRTKRVNTSSVAIRAQAAAVSAPTATPASPAG-----KKTVRTGNAII 87 Query: 335 TXXXXXXXXXXXXXXXETGKWHVVMACRDFLKASRRPR 448 T E+GKWHV+MACRD+LK +R R Sbjct: 88 TGASSGLGLATAKALAESGKWHVIMACRDYLKTARAAR 125
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 51.6 bits (122), Expect = 9e-07 Identities = 23/49 (46%), Positives = 28/49 (57%) Frame = +2 Query: 302 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKASRRPR 448 KKT R+G VIT +TGKWHV+MACR+FLKA + R Sbjct: 84 KKTERKGTAVITGASSGLGLATAKALADTGKWHVIMACRNFLKAEKAAR 132
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 49.3 bits (116), Expect = 5e-06 Identities = 23/39 (58%), Positives = 24/39 (61%) Frame = +2 Query: 323 VVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKASR 439 VVVIT ETGKWHVVMACRDFLKAS+ Sbjct: 1 VVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKASK 39
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 48.9 bits (115), Expect = 6e-06 Identities = 32/102 (31%), Positives = 42/102 (41%) Frame = +2 Query: 143 GSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXXKKTLRQG 322 G MG VA K A L VS+ A ++++ KKT + Sbjct: 92 GLRMGEVA-KFGGALLSVSTVAAN----LKSKPGVLSVNAVTAPAETMNKPSSKKTATKS 146 Query: 323 VVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKASRRPR 448 +IT +TG+WHV+MACRDFLKA R R Sbjct: 147 TCIITGASSGLGLATAKALADTGEWHVIMACRDFLKAERAAR 188
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 41.6 bits (96), Expect = 0.001 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = +2 Query: 308 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKASRRPRR 451 T ++ +IT TG+WHVVMACRDFLKA + ++ Sbjct: 82 TQQKQTAIITGASSGLGLNAAKALAATGEWHVVMACRDFLKAEQAAKK 129
>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 366 Score = 32.0 bits (71), Expect = 0.74 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = -3 Query: 180 AVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELEL 31 AVS L F+G+E VEG S + +D E L L++ +ELEL Sbjct: 243 AVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELEL 292
>ICAM5_MOUSE (Q60625) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 917 Score = 30.8 bits (68), Expect = 1.7 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -3 Query: 321 PCRSVFLPLGDDAVEPGLVVTGEGAVATCVLTAS 220 P V+L LGD + P + + G+ VAT TAS Sbjct: 258 PEAGVYLSLGDQRLNPNVTLDGDSLVATATATAS 291
>YHIM_ECOLI (P37630) Inner membrane protein yhiM| Length = 364 Score = 30.4 bits (67), Expect = 2.2 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -3 Query: 288 DAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPM 151 D G V+ G G +A CV T + + LL P+NAA S + P+ Sbjct: 117 DEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPV 162
>CASK_CAMDR (P79139) Kappa-casein precursor| Length = 182 Score = 30.0 bits (66), Expect = 2.8 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -3 Query: 282 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 160 VEP ++ T E AV T V+ + + F TP V T+T Sbjct: 140 VEPPVIPTAEPAVNTVVIAEASSEFITTSTPETTTVQITST 180
>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 924 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -3 Query: 309 VFLPLGDDAVEPGLVVTGEGAVATCVLTAS 220 V+L LGD + P + + G+ VAT TAS Sbjct: 262 VYLALGDQNLSPDVTLEGDAFVATATATAS 291
>FLR1_YEAST (P38124) Fluconazole resistance protein 1| Length = 548 Score = 28.5 bits (62), Expect = 8.2 Identities = 26/86 (30%), Positives = 39/86 (45%) Frame = -3 Query: 267 VVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDG 88 + TG G VA + S L+L +A AP+L P LG V+ ++WR + Sbjct: 212 LATGGGTVADII---SPEMVPLVLGMWSAGA---VAAPVLAPLLGAAMVDAKNWRFIFWL 265 Query: 87 ELGLSLASTALQEFNELELECTVLLY 10 + LS A+ L F E + +LY Sbjct: 266 LMWLSAATFILLAFFFPETQHHNILY 291
>CASK_LAMGU (Q28451) Kappa-casein (Fragment)| Length = 125 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 282 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 160 VEP ++ T E V T V+ + + F TP V T+T Sbjct: 83 VEPPVIPTAEPVVNTVVIAEASSEFITTSTPETTTVQITST 123 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,624,914 Number of Sequences: 219361 Number of extensions: 337578 Number of successful extensions: 1391 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1376 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1387 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
