Clone Information

BLAST Search Result

Clone Name	bast78a06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 s...	32	0.93
2	PSME1_PIG (Q64L94) Proteasome activator complex subunit 1 (Prote...	32	0.93
3	PSME1_HUMAN (Q06323) Proteasome activator complex subunit 1 (Pro...	32	0.93
4	PSME1_BOVIN (Q4U5R3) Proteasome activator complex subunit 1 (Pro...	32	0.93
5	PSME1_MACFA (P58238) Proteasome activator complex subunit 1 (Pro...	32	1.2
6	ZMAT2_MOUSE (Q9CPW7) Zinc finger matrin type 2	31	1.6
7	ZMAT2_HUMAN (Q96NC0) Zinc finger matrin type 2	31	1.6
8	RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats pro...	31	2.1
9	PSME1_MOUSE (P97371) Proteasome activator complex subunit 1 (Pro...	31	2.1
10	RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote...	31	2.1
11	IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 s...	30	2.7
12	L1CAM_HUMAN (P32004) Neural cell adhesion molecule L1 precursor ...	30	2.7
13	PRELP_HUMAN (P51888) Prolargin precursor (Proline-arginine-rich ...	30	3.5
14	RED_MOUSE (Q9Z1M8) Protein Red (Protein RER) (IK factor) (Cytoki...	30	4.6
15	PRELP_RAT (Q9EQP5) Prolargin precursor (Proline-arginine-rich en...	29	6.0
16	TIM_DROME (P49021) Protein timeless	29	6.0
17	RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats pro...	29	6.0
18	TIM_DROVI (O17482) Protein timeless	29	7.8
19	RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U...	29	7.8
20	NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-...	29	7.8
21	HXA9_HUMAN (P31269) Homeobox protein Hox-A9 (Hox-1G)	29	7.8
22	ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in...	29	7.8
23	K0853_HUMAN (Q5T200) Protein KIAA0853	29	7.8
24	HXA9_MOUSE (P09631) Homeobox protein Hox-A9 (Hox-1.7)	29	7.8
25	VG04_ICHV1 (Q00108) Hypothetical gene 4 protein	29	7.8

>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3|
            theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a)
          Length = 1382

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 331  DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRG 435
            DN  R + DK+   ER R+R+ D +D  RR +D G
Sbjct: 1212 DNQDREENDKDPERERDRERDVDREDRFRRPRDEG 1246

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>PSME1_PIG (Q64L94) Proteasome activator complex subunit 1 (Proteasome|
           activator 28-alpha subunit) (PA28alpha) (PA28a)
          Length = 249

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 13/30 (43%), Positives = 24/30 (80%), Gaps = 2/30 (6%)
 Frame = +1

Query: 358 KEEYLERARQRERDEKDEARRG--KDRGPP 441
           ++E  ER +Q+E+++KDE ++G  +D+GPP
Sbjct: 71  EKEKEERKKQQEKEDKDEKKKGEDEDKGPP 100

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>PSME1_HUMAN (Q06323) Proteasome activator complex subunit 1 (Proteasome|
           activator 28-alpha subunit) (PA28alpha) (PA28a)
           (Activator of multicatalytic protease subunit 1) (11S
           regulator complex alpha subunit) (REG-alpha) (Interferon
           gamma up-regulated I-51
          Length = 249

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 13/30 (43%), Positives = 24/30 (80%), Gaps = 2/30 (6%)
 Frame = +1

Query: 358 KEEYLERARQRERDEKDEARRG--KDRGPP 441
           ++E  ER +Q+E+++KDE ++G  +D+GPP
Sbjct: 71  EKEKEERKKQQEKEDKDEKKKGEDEDKGPP 100

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>PSME1_BOVIN (Q4U5R3) Proteasome activator complex subunit 1 (Proteasome|
           activator 28-alpha subunit) (PA28alpha) (PA28a)
          Length = 249

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 13/30 (43%), Positives = 24/30 (80%), Gaps = 2/30 (6%)
 Frame = +1

Query: 358 KEEYLERARQRERDEKDEARRG--KDRGPP 441
           ++E  ER +Q+E+++KDE ++G  +D+GPP
Sbjct: 71  EKEKEERRKQQEKEDKDEKKKGEDEDKGPP 100

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>PSME1_MACFA (P58238) Proteasome activator complex subunit 1 (Proteasome|
           activator 28-alpha subunit) (PA28alpha) (PA28a)
           (Activator of multicatalytic protease subunit 1) (11S
           regulator complex alpha subunit) (REG-alpha)
          Length = 249

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 13/30 (43%), Positives = 24/30 (80%), Gaps = 2/30 (6%)
 Frame = +1

Query: 358 KEEYLERARQRERDEKDEARRG--KDRGPP 441
           ++E  ER +Q+E+++KDE ++G  +D+GPP
Sbjct: 71  EKEKGERKKQQEKEDKDEKKKGEDEDKGPP 100

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>ZMAT2_MOUSE (Q9CPW7) Zinc finger matrin type 2|
          Length = 199

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 322 SGVDNT-FRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQ 447
           SG  N  FRRK+DK+EY + A +R  +E++     K  G PVQ
Sbjct: 5   SGTKNLDFRRKWDKDEYEKLAEKRLTEERE-----KKDGKPVQ 42

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>ZMAT2_HUMAN (Q96NC0) Zinc finger matrin type 2|
          Length = 199

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 322 SGVDNT-FRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQ 447
           SG  N  FRRK+DK+EY + A +R  +E++     K  G PVQ
Sbjct: 5   SGTKNLDFRRKWDKDEYEKLAEKRLTEERE-----KKDGKPVQ 42

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>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-2)
          Length = 1558

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 355 DKEEYLERARQRERDEKDEARRGKDRGP 438
           DKE+  +R R RERD++D+AR  ++  P
Sbjct: 10  DKEKDRDRDRDRERDKRDKARESENARP 37

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>PSME1_MOUSE (P97371) Proteasome activator complex subunit 1 (Proteasome|
           activator 28-alpha subunit) (PA28alpha) (PA28a)
           (Activator of multicatalytic protease subunit 1) (11S
           regulator complex alpha subunit) (REG-alpha)
          Length = 249

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
 Frame = +1

Query: 358 KEEYLERARQRERDEKDEARRGK--DRGPP 441
           ++E  ER +Q+E++EK+E ++G   D+GPP
Sbjct: 71  EKEKEERKKQQEKEEKEEKKKGDEDDKGPP 100

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>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-related protein)
          Length = 1559

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 355 DKEEYLERARQRERDEKDEARRGKDRGP 438
           DKE+  +R R RERD++D+AR  ++  P
Sbjct: 10  DKEKDRDRDRDRERDKRDKARESENARP 37

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>IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3|
            theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162
            protein) (Centrosomin)
          Length = 1344

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 331  DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRG 435
            DN  R + DK+   +R R+R+ D +D  RR +D G
Sbjct: 1173 DNQDREENDKDLERDRDRERDGDREDRFRRPRDEG 1207

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>L1CAM_HUMAN (P32004) Neural cell adhesion molecule L1 precursor (N-CAM L1)|
           (CD171 antigen)
          Length = 1257

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 466 PMLKGCLAQEGPYPCLSWLRPSHP 395
           P++  C+A+  P P + WLRPS P
Sbjct: 259 PLVLECIAEGFPTPTIKWLRPSGP 282

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>PRELP_HUMAN (P51888) Prolargin precursor (Proline-arginine-rich end|
           leucine-rich repeat protein)
          Length = 382

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -3

Query: 433 PYPCLSWLRPSHPALSVELAPSTPPCQISFGKCCPRRKDCQTSCP 299
           P P  S+ +P  PA   +L P  PP   S    CPR   C    P
Sbjct: 40  PRPTPSFPQPDEPAEPTDLPPPLPPGPPSIFPDCPRECYCPPDFP 84

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>RED_MOUSE (Q9Z1M8) Protein Red (Protein RER) (IK factor) (Cytokine IK)|
          Length = 557

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 346 RKFDKEEYLERARQRERDEKDEARRGKDR 432
           R  ++E Y ER R RERD   E  R +DR
Sbjct: 334 RDKERERYRERERDRERDRDRERDRERDR 362

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>PRELP_RAT (Q9EQP5) Prolargin precursor (Proline-arginine-rich end|
           leucine-rich repeat protein)
          Length = 377

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -3

Query: 433 PYPCLSWLRPSHPALSVELAPSTPPCQISFGKCCPRRKDCQTSCP 299
           P P  S+ +P  PA   +L P  PP   S    CPR   C    P
Sbjct: 35  PRPTPSFPQPHEPAEPTDLPPPLPPGPPSVFPDCPRECYCPPDFP 79

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>TIM_DROME (P49021) Protein timeless|
          Length = 1421

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 376 APSTPPCQISFGKCCPRRKDCQTS 305
           +P     Q++ GKCCP++++C +S
Sbjct: 492 SPHAGQLQLTKGKCCPQKRECPSS 515

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>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 355 DKEEYLERARQRERDEKDEARRGKDRGP 438
           DKE+  +R R RER+++D+AR  ++  P
Sbjct: 10  DKEKDRDRDRDREREKRDKARESENSRP 37

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>TIM_DROVI (O17482) Protein timeless|
          Length = 1343

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 376 APSTPPCQISFGKCCPRRKDCQTSCPVH 293
           +P     Q+  GKCCP++++C +S   H
Sbjct: 436 SPHAGQLQLIKGKCCPQKRECPSSQSEH 463

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>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 325 GVDNTFRRKFDKEEYLERARQRERD-EKDEARRGKDR 432
           G+D    ++  +E+  ER R+R+RD EK E  R KDR
Sbjct: 335 GIDGIELKQEPEEKSRERDRERDRDREKGEKDRDKDR 371

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>NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2498

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 313  GNPSGVDNTFRRKFDKEEYLERARQRERDEKDEARRGKDR 432
            G+P+ + N+   + ++E   ER R RER EK++  R  DR
Sbjct: 1756 GHPAHLANSVSAERERERERERERDRER-EKEQRERESDR 1794

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>HXA9_HUMAN (P31269) Homeobox protein Hox-A9 (Hox-1G)|
          Length = 272

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = -3

Query: 445 AQEGPYPCLSWLRPSHPALSVELAPSTPPCQISFGKCCPRRKDCQT 308
           A +G Y   SWL P+  ALS    PS+ P  I       RR DC T
Sbjct: 102 APDGRY-MRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPT 146

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>ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in the nucleus|
            (Acinus)
          Length = 1341

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 355  DKEEYLERARQRERDEKDEAR--RGKDRGPPVQD 450
            D++   +R R RERD +D  R  R + R  PV+D
Sbjct: 1303 DRDRERDRERGRERDRRDTKRHSRSRSRSTPVRD 1336

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>K0853_HUMAN (Q5T200) Protein KIAA0853|
          Length = 1668

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 346 RKFDKEEYLERARQRERDEKDEARRGKDR 432
           R+ +KE  LER R RER+ + E  R ++R
Sbjct: 699 REREKERELERERAREREREREKERDRER 727

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>HXA9_MOUSE (P09631) Homeobox protein Hox-A9 (Hox-1.7)|
          Length = 271

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = -3

Query: 445 AQEGPYPCLSWLRPSHPALSVELAPSTPPCQISFGKCCPRRKDCQT 308
           A +G Y   SWL P+  ALS    PS+ P  I       RR DC T
Sbjct: 101 APDGRY-MRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPT 145

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>VG04_ICHV1 (Q00108) Hypothetical gene 4 protein|
          Length = 179

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
 Frame = -2

Query: 128 AERRNGAEVRRRAGRRPWNPIAR-------ASWEVGDRGTRFPGCGCPP 3
           A R     V RRA   PW   A        AS +  D  TR  GCGC P
Sbjct: 116 ARRHRSDSVARRARFEPWRGRASRPTVLTPASGDSDDVDTRTFGCGCGP 164


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,849,758
Number of Sequences: 219361
Number of extensions: 903944
Number of successful extensions: 4310
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4198
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result