ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast78a06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK059869.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-E08, full insert sequence Length = 1194 Score = 165 bits (83), Expect = 2e-37 Identities = 178/207 (85%), Gaps = 2/207 (0%) Strand = Plus / Plus Query: 273 caggtagcagctgcttggtggtggacagggcaagatgtctggcaatccttccggcgtgga 332 |||||||||||||||||| |||| ||| |||| |||||| ||||||| || || || Sbjct: 244 caggtagcagctgcttggcagtgggcagagcaacatgtctagcaatccggttggtgtcga 303 Query: 333 caacactttccgaaggaaatttgacaaggaggagtacttggagcgagctcgacagagaga 392 ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| || Sbjct: 304 taacactttccggaggaaatttgacaaggaggagtacttggaacgagctcggcagaggga 363 Query: 393 gcgggatgagaaggacgaagccaggagaggcaaggataggggccctcctgtgc-aagaca 451 |||||| |||||||| ||||| ||| ||||||||| | |||||||||||||| ||| || Sbjct: 364 gcgggaggagaaggaagaagcgcggaaaggcaaggaaaagggccctcctgtgcaaaggca 423 Query: 452 gcctttg-agcatagggattatgaagt 477 |||||| |||||||||| |||||||| Sbjct: 424 acctttgaagcatagggactatgaagt 450
>ref|NM_185077.1| Oryza sativa (japonica cultivar-group), mRNA Length = 935 Score = 147 bits (74), Expect = 4e-32 Identities = 130/146 (89%), Gaps = 2/146 (1%) Strand = Plus / Plus Query: 334 aacactttccgaaggaaatttgacaaggaggagtacttggagcgagctcgacagagagag 393 ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||| Sbjct: 28 aacactttccggaggaaatttgacaaggaggagtacttggaacgagctcggcagagggag 87 Query: 394 cgggatgagaaggacgaagccaggagaggcaaggataggggccctcctgtgc-aagacag 452 ||||| |||||||| ||||| ||| ||||||||| | |||||||||||||| ||| || Sbjct: 88 cgggaggagaaggaagaagcgcggaaaggcaaggaaaagggccctcctgtgcaaaggcaa 147 Query: 453 cctttg-agcatagggattatgaagt 477 |||||| |||||||||| |||||||| Sbjct: 148 cctttgaagcatagggactatgaagt 173
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 105 bits (53), Expect = 1e-19 Identities = 68/73 (93%) Strand = Plus / Plus Query: 334 aacactttccgaaggaaatttgacaaggaggagtacttggagcgagctcgacagagagag 393 ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||| Sbjct: 34638472 aacactttccggaggaaatttgacaaggaggagtacttggaacgagctcggcagagggag 34638531 Query: 394 cgggatgagaagg 406 ||||| ||||||| Sbjct: 34638532 cgggaggagaagg 34638544 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Plus Query: 274 aggtagcagctgcttggtggtggacagggcaagatgtctggcaat 318 ||||||||||||||||| |||| ||| |||| |||||| ||||| Sbjct: 34638323 aggtagcagctgcttggcagtgggcagagcaacatgtctagcaat 34638367 Score = 40.1 bits (20), Expect = 6.7 Identities = 43/48 (89%), Gaps = 2/48 (4%) Strand = Plus / Plus Query: 432 gggccctcctgtgc-aagacagcctttg-agcatagggattatgaagt 477 |||||||||||||| ||| || |||||| |||||||||| |||||||| Sbjct: 34638775 gggccctcctgtgcaaaggcaacctttgaagcatagggactatgaagt 34638822
>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence Length = 164236 Score = 105 bits (53), Expect = 1e-19 Identities = 68/73 (93%) Strand = Plus / Plus Query: 334 aacactttccgaaggaaatttgacaaggaggagtacttggagcgagctcgacagagagag 393 ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||| Sbjct: 96189 aacactttccggaggaaatttgacaaggaggagtacttggaacgagctcggcagagggag 96248 Query: 394 cgggatgagaagg 406 ||||| ||||||| Sbjct: 96249 cgggaggagaagg 96261 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Plus Query: 274 aggtagcagctgcttggtggtggacagggcaagatgtctggcaat 318 ||||||||||||||||| |||| ||| |||| |||||| ||||| Sbjct: 96040 aggtagcagctgcttggcagtgggcagagcaacatgtctagcaat 96084 Score = 40.1 bits (20), Expect = 6.7 Identities = 43/48 (89%), Gaps = 2/48 (4%) Strand = Plus / Plus Query: 432 gggccctcctgtgc-aagacagcctttg-agcatagggattatgaagt 477 |||||||||||||| ||| || |||||| |||||||||| |||||||| Sbjct: 96492 gggccctcctgtgcaaaggcaacctttgaagcatagggactatgaagt 96539
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 105 bits (53), Expect = 1e-19 Identities = 68/73 (93%) Strand = Plus / Plus Query: 334 aacactttccgaaggaaatttgacaaggaggagtacttggagcgagctcgacagagagag 393 ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||| Sbjct: 34728544 aacactttccggaggaaatttgacaaggaggagtacttggaacgagctcggcagagggag 34728603 Query: 394 cgggatgagaagg 406 ||||| ||||||| Sbjct: 34728604 cgggaggagaagg 34728616 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Plus Query: 274 aggtagcagctgcttggtggtggacagggcaagatgtctggcaat 318 ||||||||||||||||| |||| ||| |||| |||||| ||||| Sbjct: 34728395 aggtagcagctgcttggcagtgggcagagcaacatgtctagcaat 34728439 Score = 40.1 bits (20), Expect = 6.7 Identities = 43/48 (89%), Gaps = 2/48 (4%) Strand = Plus / Plus Query: 432 gggccctcctgtgc-aagacagcctttg-agcatagggattatgaagt 477 |||||||||||||| ||| || |||||| |||||||||| |||||||| Sbjct: 34728847 gggccctcctgtgcaaaggcaacctttgaagcatagggactatgaagt 34728894
>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete sequence Length = 129302 Score = 105 bits (53), Expect = 1e-19 Identities = 68/73 (93%) Strand = Plus / Minus Query: 334 aacactttccgaaggaaatttgacaaggaggagtacttggagcgagctcgacagagagag 393 ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||| Sbjct: 4861 aacactttccggaggaaatttgacaaggaggagtacttggaacgagctcggcagagggag 4802 Query: 394 cgggatgagaagg 406 ||||| ||||||| Sbjct: 4801 cgggaggagaagg 4789 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Minus Query: 274 aggtagcagctgcttggtggtggacagggcaagatgtctggcaat 318 ||||||||||||||||| |||| ||| |||| |||||| ||||| Sbjct: 5010 aggtagcagctgcttggcagtgggcagagcaacatgtctagcaat 4966 Score = 40.1 bits (20), Expect = 6.7 Identities = 43/48 (89%), Gaps = 2/48 (4%) Strand = Plus / Minus Query: 432 gggccctcctgtgc-aagacagcctttg-agcatagggattatgaagt 477 |||||||||||||| ||| || |||||| |||||||||| |||||||| Sbjct: 4558 gggccctcctgtgcaaaggcaacctttgaagcatagggactatgaagt 4511
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 35 ctcgatcccccacctcccagctcgccctcgcaatagggtt 74 |||||||||||||||||| |||| |||||||||||||||| Sbjct: 55694 ctcgatcccccacctccccgctcaccctcgcaatagggtt 55655 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 129 ccgctcgctcgcctctaggcccggagccgctgctccgccctgtccgctcgcctcc 183 |||| |||||||||| ||||||||||| |||||||||||| | | |||||||||| Sbjct: 55564 ccgcccgctcgcctccaggcccggagctgctgctccgccccgcctgctcgcctcc 55510 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 256 ccacgccggagtttgctcagg 276 ||||||||||||||||||||| Sbjct: 55432 ccacgccggagtttgctcagg 55412 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 172 ccgctcgcctcctgtcccgcagcagctgctccgccc 207 |||||||||||| | |||| ||| |||||||||||| Sbjct: 55560 ccgctcgcctccaggcccggagctgctgctccgccc 55525
>dbj|AP002348.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2528N2, complete sequences Length = 208600 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 gccctcctgtgcaagacagcc 454 ||||||||||||||||||||| Sbjct: 42356 gccctcctgtgcaagacagcc 42336
>dbj|AP000758.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-775A2, complete sequence Length = 163025 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 gccctcctgtgcaagacagcc 454 ||||||||||||||||||||| Sbjct: 151464 gccctcctgtgcaagacagcc 151444
>gb|AC154048.1| Drosophila melanogaster clone BACR29A04, complete sequence Length = 159930 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 ccgcagcagctgctccgccc 207 |||||||||||||||||||| Sbjct: 45079 ccgcagcagctgctccgccc 45098
>gb|AC154042.1| Drosophila melanogaster clone BACR46E23, complete sequence Length = 181148 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 ccgcagcagctgctccgccc 207 |||||||||||||||||||| Sbjct: 12262 ccgcagcagctgctccgccc 12243
>ref|XM_470049.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1875 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 384 acagagagagcgggatgagaagga 407 ||||| |||||||||||||||||| Sbjct: 1260 acagaaagagcgggatgagaagga 1283
>gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 14, complete sequence Length = 762694 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgacaaggaggagtacttgg 373 |||||||||||||||||||| Sbjct: 640996 tgacaaggaggagtacttgg 641015
>gb|AC069469.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-75J13, complete sequence Length = 172786 Score = 40.1 bits (20), Expect = 6.7 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 110 ccccgttcctccgctccgcccgctcgctcgcc 141 |||| ||||||||| ||||||||||||||||| Sbjct: 142149 cccccttcctccgc-ccgcccgctcgctcgcc 142119
>gb|AC079216.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-353E8, complete sequence Length = 221748 Score = 40.1 bits (20), Expect = 6.7 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 110 ccccgttcctccgctccgcccgctcgctcgcc 141 |||| ||||||||| ||||||||||||||||| Sbjct: 2952 cccccttcctccgc-ccgcccgctcgctcgcc 2922
>gb|AC126057.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0026D16, complete sequence Length = 129166 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cctccgctccgcccgctcgc 136 |||||||||||||||||||| Sbjct: 16173 cctccgctccgcccgctcgc 16192
>ref|NM_015117.1| Homo sapiens zinc finger CCCH-type containing 3 (ZC3H3), mRNA Length = 3268 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gcctcctgtcccgcagcagc 197 |||||||||||||||||||| Sbjct: 318 gcctcctgtcccgcagcagc 337
>emb|AL589733.20| Human DNA sequence from clone RP11-164L23 on chromosome 6 Contains the 5' end of a novel gene, the gene for HGC6.1.1 protein, the KNSL3 gene for kinesin-like 3, the gene for a novel protein and 5 CpG islands, complete sequence Length = 201088 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 caggagaggcaaggataggg 433 |||||||||||||||||||| Sbjct: 186017 caggagaggcaaggataggg 185998
>emb|AL079341.19|HSDJ319M7 Human DNA sequence from clone RP1-319M7 on chromosome 6p21.1-21.3 Contains the 5' end of the gene for a novel protein (contains KIAA1880 and FLJ32945), a TRK-fused gene (TFG) pseudogene and a CpG island, complete sequence Length = 128216 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 415 aggagaggcaaggataggggccct 438 ||||||||||||||||||| |||| Sbjct: 16120 aggagaggcaaggatagggcccct 16097
>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05, complete sequence Length = 141715 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ccgcccgctcgctcgcctct 144 |||||||||||||||||||| Sbjct: 12099 ccgcccgctcgctcgcctct 12118
>gb|AC012180.6| Homo sapiens chromosome 16 clone RP11-31I10, complete sequence Length = 69437 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 104 cctccgccccgttcctccgctccgcccg 131 ||||||||||||||| |||| ||||||| Sbjct: 3865 cctccgccccgttcccccgcgccgcccg 3838
>gb|BC038670.1| Homo sapiens zinc finger CCCH-type containing 3, mRNA (cDNA clone MGC:43116 IMAGE:5260824), complete cds Length = 3268 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gcctcctgtcccgcagcagc 197 |||||||||||||||||||| Sbjct: 318 gcctcctgtcccgcagcagc 337
>emb|AL031718.11|HS371H6 Human DNA sequence from clone LA16-371H6 on chromosome 16 Contains part of the gene for KIAA0516 protein, part of a gene similar to NDP kinase, ESTs, an STS and 2 CpG Islands, complete sequence Length = 20612 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 104 cctccgccccgttcctccgctccgcccg 131 ||||||||||||||| |||| ||||||| Sbjct: 1163 cctccgccccgttcccccgcgccgcccg 1136
>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08, complete sequence Length = 166218 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ccgcccgctcgctcgcctct 144 |||||||||||||||||||| Sbjct: 37940 ccgcccgctcgctcgcctct 37959
>gb|AE006639.1| Homo sapiens 16p13.3 sequence section 7 of 8 Length = 270150 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 104 cctccgccccgttcctccgctccgcccg 131 ||||||||||||||| |||| ||||||| Sbjct: 158241 cctccgccccgttcccccgcgccgcccg 158214
>gb|AC067930.7| Homo sapiens chromosome 8, clone RP11-661A12, complete sequence Length = 174906 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gcctcctgtcccgcagcagc 197 |||||||||||||||||||| Sbjct: 77226 gcctcctgtcccgcagcagc 77207
>ref|NM_167302.1| Drosophila melanogaster CG1841-RB, transcript variant B (CG1841), mRNA Length = 3261 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 ccgcagcagctgctccgccc 207 |||||||||||||||||||| Sbjct: 617 ccgcagcagctgctccgccc 598
>dbj|D63484.1| Homo sapiens mRNA for KIAA0150 gene, partial cds Length = 3231 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gcctcctgtcccgcagcagc 197 |||||||||||||||||||| Sbjct: 295 gcctcctgtcccgcagcagc 314
>ref|NM_132515.2| Drosophila melanogaster CG1841-RA, transcript variant A (CG1841), mRNA Length = 3012 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 ccgcagcagctgctccgccc 207 |||||||||||||||||||| Sbjct: 368 ccgcagcagctgctccgccc 349
>gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0039K08, complete sequence Length = 122163 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cctccgctccgcccgctcgc 136 |||||||||||||||||||| Sbjct: 100683 cctccgctccgcccgctcgc 100702
>gb|AY069304.1| Drosophila melanogaster HL07962 full length cDNA Length = 3023 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 ccgcagcagctgctccgccc 207 |||||||||||||||||||| Sbjct: 364 ccgcagcagctgctccgccc 345
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cctccgctccgcccgctcgc 136 |||||||||||||||||||| Sbjct: 25788340 cctccgctccgcccgctcgc 25788359
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 ggccgccgccccgcccgacgccga 102 ||||||| |||||||||||||||| Sbjct: 7425809 ggccgcctccccgcccgacgccga 7425786
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ccgcccgctcgctcgcctct 144 |||||||||||||||||||| Sbjct: 27005517 ccgcccgctcgctcgcctct 27005536
>gb|AC092903.11| Homo sapiens 3 BAC RP11-666A20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161141 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 gaagccaggagaggcaagga 428 |||||||||||||||||||| Sbjct: 130994 gaagccaggagaggcaagga 131013
>gb|AC103705.5| Homo sapiens chromosome 8, clone RP11-55J15, complete sequence Length = 194189 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 gaagccaggagaggcaagga 428 |||||||||||||||||||| Sbjct: 110944 gaagccaggagaggcaagga 110963
>gb|AC135377.3| Mus musculus BAC clone RP24-66B2 from chromosome 19, complete sequence Length = 179745 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 cctgtccgctcgcctcctgt 186 |||||||||||||||||||| Sbjct: 55594 cctgtccgctcgcctcctgt 55613
>dbj|AP004862.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0001B11 Length = 166004 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 ggccgccgccccgcccgacgccga 102 ||||||| |||||||||||||||| Sbjct: 132394 ggccgcctccccgcccgacgccga 132371
>dbj|AK103214.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122M20, full insert sequence Length = 2080 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 384 acagagagagcgggatgagaagga 407 ||||| |||||||||||||||||| Sbjct: 1427 acagaaagagcgggatgagaagga 1450
>gb|AE003487.2| Drosophila melanogaster chromosome X, section 39 of 74 of the complete sequence Length = 308317 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 ccgcagcagctgctccgccc 207 |||||||||||||||||||| Sbjct: 15800 ccgcagcagctgctccgccc 15781
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 gggccgccgccccgcccgacgccg 101 |||||||||||||| ||||||||| Sbjct: 2601407 gggccgccgccccggccgacgccg 2601430
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cctccgctccgcccgctcgc 136 |||||||||||||||||||| Sbjct: 26107010 cctccgctccgcccgctcgc 26107029
>gb|M15850.1|CHKVIM1 Chicken vimentin gene, exons 1 and 2 Length = 2842 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 gggccgccgccccgcccgacgccg 101 |||||||||||||||||| ||||| Sbjct: 726 gggccgccgccccgcccgccgccg 703 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,509,462 Number of Sequences: 3902068 Number of extensions: 3509462 Number of successful extensions: 73789 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 73433 Number of HSP's gapped (non-prelim): 357 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
