ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast77h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK098903.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
2dbj|AK061837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
4dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
5dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
6gb|AY109707.1| Zea mays CL21464_1 mRNA sequence 90 8e-15
7gb|BT018159.1| Zea mays clone EL01N0556C01.c mRNA sequence 66 1e-07
8ref|XM_775599.1| PREDICTED: Strongylocentrotus purpuratus simila... 48 0.027
9gb|DQ335429.1| Kryptolebias marmoratus strain Honduras microsate... 48 0.027
10emb|BX470102.12| Human DNA sequence from clone RP11-49N14 on chr... 46 0.11
11gb|AC104070.3| Homo sapiens BAC clone RP11-279K24 from 4, comple... 46 0.11
12dbj|AK104352.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
13dbj|AK066195.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
14dbj|AK065072.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
15dbj|AK060406.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
16emb|AJ628149.4| Micromonospora echinospora genomic region of the... 46 0.11
17emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genom... 44 0.42
18ref|XM_468113.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
19ref|XM_468112.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
20ref|XM_507011.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 1.7
21ref|XM_362404.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 1.7
22emb|AL359986.15| Human DNA sequence from clone RP11-106M14 on ch... 42 1.7
23emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete ... 42 1.7
24gb|AC023693.4| Drosophila melanogaster X BAC RP98-17B23 (Roswell... 42 1.7
25gb|AC105941.2| Homo sapiens chromosome 1 clone RP11-382E9, compl... 42 1.7
26dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
27dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
28dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
29dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
30dbj|AK119213.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
31dbj|AK073762.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
32emb|Z96239.1|HS12QT039 H.sapiens telomeric DNA sequence, clone 1... 42 1.7
33dbj|AK060474.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
34gb|AE003484.3| Drosophila melanogaster chromosome X, section 36 ... 42 1.7
35gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.7
36gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.6
37emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete ... 40 6.6
38gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 6.6
39gb|AC157772.4| Mus musculus chromosome 15, clone RP24-323B16, co... 40 6.6
40dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
41dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
42emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4,... 40 6.6
43gb|AC134507.2| Homo sapiens 3 BAC RP11-674K24 (Roswell Park Canc... 40 6.6
44gb|DQ335420.1| Kryptolebias marmoratus strain Honduras microsate... 40 6.6
45gb|AC122769.11| Mus musculus chromosome 15, clone RP24-153A12, c... 40 6.6
46dbj|AP004863.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
47dbj|AP004093.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
48dbj|AK105435.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
49gb|AC102534.10| Mus musculus chromosome 8, clone RP23-57G23, com... 40 6.6
50emb|CR974457.17| Mouse DNA sequence from clone RP23-319E15 on ch... 40 6.6
51gb|AF050157.1|MMHC135G15 Mus musculus major histocompatibility l... 40 6.6
52gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6 
>dbj|AK098903.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002C22, full
           insert sequence
          Length = 1016

 Score =  135 bits (68), Expect = 1e-28
 Identities = 104/116 (89%)
 Strand = Plus / Plus

                                                                       
Query: 328 ctcgtcgtcagggccgccaccgtcgtctcgcccaagtatacttctgtgaaaccattggga 387
           |||||||| ||||||||||| ||||| |||||||||||||||||| | ||||| ||||||
Sbjct: 214 ctcgtcgtgagggccgccacggtcgtgtcgcccaagtatacttctatcaaacccttggga 273

                                                                   
Query: 388 gatagggtactagtgaagagcaagacctctgaggataaaactgctggagggatatt 443
           |||||||| || ||||||| |||||||||||| |||||||||| |||||| |||||
Sbjct: 274 gatagggtgcttgtgaagatcaagacctctgatgataaaactgttggaggaatatt 329
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>dbj|AK061837.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-D10, full
           insert sequence
          Length = 1008

 Score =  135 bits (68), Expect = 1e-28
 Identities = 104/116 (89%)
 Strand = Plus / Plus

                                                                       
Query: 328 ctcgtcgtcagggccgccaccgtcgtctcgcccaagtatacttctgtgaaaccattggga 387
           |||||||| ||||||||||| ||||| |||||||||||||||||| | ||||| ||||||
Sbjct: 233 ctcgtcgtgagggccgccacggtcgtgtcgcccaagtatacttctatcaaacccttggga 292

                                                                   
Query: 388 gatagggtactagtgaagagcaagacctctgaggataaaactgctggagggatatt 443
           |||||||| || ||||||| |||||||||||| |||||||||| |||||| |||||
Sbjct: 293 gatagggtgcttgtgaagatcaagacctctgatgataaaactgttggaggaatatt 348
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                            
Query: 362      agtatacttctgtgaaaccattgggagatagggtactagtgaagagcaagacctctgagg 421
                ||||||||||| | ||||| |||||||||||||| || ||||||| |||||||||||| |
Sbjct: 16185094 agtatacttctatcaaacccttgggagatagggtgcttgtgaagatcaagacctctgatg 16185035

                                      
Query: 422      ataaaactgctggagggatatt 443
                ||||||||| |||||| |||||
Sbjct: 16185034 ataaaactgttggaggaatatt 16185013



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 328      ctcgtcgtcagggccgccaccgtcgtctcgcccaag 363
                |||||||| ||||||||||| ||||| |||||||||
Sbjct: 16185910 ctcgtcgtgagggccgccacggtcgtgtcgcccaag 16185875
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>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1344_B01
          Length = 170912

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                        
Query: 362  agtatacttctgtgaaaccattgggagatagggtactagtgaagagcaagacctctgagg 421
            ||||||||||| | ||||| |||||||||||||| || ||||||| |||||||||||| |
Sbjct: 1610 agtatacttctatcaaacccttgggagatagggtgcttgtgaagatcaagacctctgatg 1551

                                  
Query: 422  ataaaactgctggagggatatt 443
            ||||||||| |||||| |||||
Sbjct: 1550 ataaaactgttggaggaatatt 1529



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 328  ctcgtcgtcagggccgccaccgtcgtctcgcccaag 363
            |||||||| ||||||||||| ||||| |||||||||
Sbjct: 2426 ctcgtcgtgagggccgccacggtcgtgtcgcccaag 2391
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>dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0556H01
          Length = 149800

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                         
Query: 362   agtatacttctgtgaaaccattgggagatagggtactagtgaagagcaagacctctgagg 421
             ||||||||||| | ||||| |||||||||||||| || ||||||| |||||||||||| |
Sbjct: 89695 agtatacttctatcaaacccttgggagatagggtgcttgtgaagatcaagacctctgatg 89636

                                   
Query: 422   ataaaactgctggagggatatt 443
             ||||||||| |||||| |||||
Sbjct: 89635 ataaaactgttggaggaatatt 89614



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 328   ctcgtcgtcagggccgccaccgtcgtctcgcccaag 363
             |||||||| ||||||||||| ||||| |||||||||
Sbjct: 90511 ctcgtcgtgagggccgccacggtcgtgtcgcccaag 90476
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>gb|AY109707.1| Zea mays CL21464_1 mRNA sequence
          Length = 907

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                       
Query: 328 ctcgtcgtcagggccgccaccgtcgtctcgcccaagtatacttctgtgaaaccattggga 387
           ||||| || ||||||||||| ||||| || || |||||||| ||  | ||||||||||||
Sbjct: 772 ctcgtggtgagggccgccacggtcgtgtcacctaagtatacatccataaaaccattggga 713

                                                                
Query: 388 gatagggtactagtgaagagcaagacctctgaggataaaactgctggagggat 440
           || || ||||| ||||||| |||||||||||||| |||| ||| |||||||||
Sbjct: 712 gacagagtacttgtgaagatcaagacctctgaggctaaatctgatggagggat 660
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>gb|BT018159.1| Zea mays clone EL01N0556C01.c mRNA sequence
          Length = 974

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                            
Query: 320 tccgaggcctcgtcgtcagggccgccaccgtcgtctcgcccaagtatac 368
           |||| |||||||||||||||||||| ||||||||| | |||||||||||
Sbjct: 157 tccgcggcctcgtcgtcagggccgctaccgtcgtcgcccccaagtatac 205
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>ref|XM_775599.1| PREDICTED: Strongylocentrotus purpuratus similar to CG2839-PA
            (LOC575184), mRNA
          Length = 1686

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 51   ccactctctccttctcccactccg 74
            ||||||||||||||||||||||||
Sbjct: 1117 ccactctctccttctcccactccg 1094
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>gb|DQ335429.1| Kryptolebias marmoratus strain Honduras microsatellite R24 sequence
          Length = 281

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 41  gctccatccaccactctctccttc 64
           ||||||||||||||||||||||||
Sbjct: 151 gctccatccaccactctctccttc 128
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>emb|BX470102.12| Human DNA sequence from clone RP11-49N14 on chromosome 1 Contains the
             S100A6 gene for S100 calcium binding protein A6
             (calcyclin), a novel gene, the S100A5 gene for S100
             calcium binding protein A5, the S100A4 gene for S100
             calcium binding protein A4 (calcium protein, calvasculin,
             metastasin, murine placental homolog), the S100A3 gene for
             S100 calcium binding protein A3, the S100A2 gene for S100
             calcium binding protein A2, the S100A16 gene for S100
             calcium binding protein A16, the S100A14 gene for S100
             calcium binding protein A14, and the 3' end of the S100A13
             gene for S100 calcium binding protein A13, complete
             sequence
          Length = 100590

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 47    tccaccactctctccttctccca 69
             |||||||||||||||||||||||
Sbjct: 46049 tccaccactctctccttctccca 46071
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>gb|AC104070.3| Homo sapiens BAC clone RP11-279K24 from 4, complete sequence
          Length = 123291

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 360   caagtatacttctgtgaaaccat 382
             |||||||||||||||||||||||
Sbjct: 52458 caagtatacttctgtgaaaccat 52436
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>dbj|AK104352.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G10, full
           insert sequence
          Length = 1129

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 326 gcctcgtcgtcagggccgccaccgtcgtctcgcccaagtatac 368
           |||||||||||| ||||||||| |||||| | || ||||||||
Sbjct: 312 gcctcgtcgtcaaggccgccacggtcgtcaccccaaagtatac 354
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>dbj|AK066195.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052L05, full
           insert sequence
          Length = 1028

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 326 gcctcgtcgtcagggccgccaccgtcgtctcgcccaagtatac 368
           |||||||||||| ||||||||| |||||| | || ||||||||
Sbjct: 313 gcctcgtcgtcaaggccgccacggtcgtcaccccaaagtatac 355
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>dbj|AK065072.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001K09, full
           insert sequence
          Length = 1130

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 326 gcctcgtcgtcagggccgccaccgtcgtctcgcccaagtatac 368
           |||||||||||| ||||||||| |||||| | || ||||||||
Sbjct: 313 gcctcgtcgtcaaggccgccacggtcgtcaccccaaagtatac 355
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>dbj|AK060406.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D05, full
           insert sequence
          Length = 416

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 326 gcctcgtcgtcagggccgccaccgtcgtctcgcccaagtatac 368
           |||||||||||| ||||||||| |||||| | || ||||||||
Sbjct: 312 gcctcgtcgtcaaggccgccacggtcgtcaccccaaagtatac 354
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>emb|AJ628149.4| Micromonospora echinospora genomic region of the gentamicin
             biosynthesis gene cluster, strain DSM 43036
          Length = 84222

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 334   gtcagggccgccaccgtcgtctcgccc 360
             |||||||||||| ||||||||||||||
Sbjct: 52851 gtcagggccgccgccgtcgtctcgccc 52877
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>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 279   cgcttcgtcgtctgcgcgtcccgtgccgac 308
             |||||||||||| |||||| ||||||||||
Sbjct: 31127 cgcttcgtcgtcggcgcgttccgtgccgac 31098
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>ref|XM_468113.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1056

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 325 ggcctcgtcgtcagggccgcc 345
           |||||||||||||||||||||
Sbjct: 242 ggcctcgtcgtcagggccgcc 262
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>ref|XM_468112.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 877

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 325 ggcctcgtcgtcagggccgcc 345
           |||||||||||||||||||||
Sbjct: 240 ggcctcgtcgtcagggccgcc 260
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>ref|XM_507011.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1369_G08.10-2
           mRNA
          Length = 1111

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 325 ggcctcgtcgtcagggccgcc 345
           |||||||||||||||||||||
Sbjct: 241 ggcctcgtcgtcagggccgcc 261
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>ref|XM_362404.1| Magnaporthe grisea 70-15 hypothetical protein (MG07987.4) partial
           mRNA
          Length = 1182

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 227 tggcgtcggcggcgatggcgaagcc 251
           ||||||||||||||| |||||||||
Sbjct: 985 tggcgtcggcggcgacggcgaagcc 961
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>emb|AL359986.15| Human DNA sequence from clone RP11-106M14 on chromosome 10 Contains the
             PPP1R3C gene for protein phosphatase 1 regulatory
             (inhibitor) subunit 3C, a glyceraldehyde-3-phosphate
             dehydrogenase (GAPD) pseudogene and a CpG island, complete
             sequence
          Length = 173119

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 460   agtcaagaccacagcagggga 480
             |||||||||||||||||||||
Sbjct: 38578 agtcaagaccacagcagggga 38598
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>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29
          Length = 298450

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 231    gtcggcggcgatggcgaagcc 251
              |||||||||||||||||||||
Sbjct: 133447 gtcggcggcgatggcgaagcc 133427
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>gb|AC023693.4| Drosophila melanogaster X BAC RP98-17B23 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 164969

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 159   ttttgtgtgctgttggcggtt 179
             |||||||||||||||||||||
Sbjct: 86862 ttttgtgtgctgttggcggtt 86882
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>gb|AC105941.2| Homo sapiens chromosome 1 clone RP11-382E9, complete sequence
          Length = 177743

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 147   ctcacggtgtgattttgtgtg 167
             |||||||||||||||||||||
Sbjct: 69753 ctcacggtgtgattttgtgtg 69773
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 326     gcctcgtcgtcagggccgccaccgtcgtc 354
               |||||||||||| ||||||||| ||||||
Sbjct: 4945494 gcctcgtcgtcaaggccgccacggtcgtc 4945522
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 325      ggcctcgtcgtcagggccgcc 345
                |||||||||||||||||||||
Sbjct: 33135557 ggcctcgtcgtcagggccgcc 33135537



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 230     cgtcggcggcgatggcgaag 249
               ||||||||||||||||||||
Sbjct: 3459432 cgtcggcggcgatggcgaag 3459451
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>dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0528E04
          Length = 170701

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 326    gcctcgtcgtcagggccgccaccgtcgtc 354
              |||||||||||| ||||||||| ||||||
Sbjct: 132977 gcctcgtcgtcaaggccgccacggtcgtc 133005
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>dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1369_G08
          Length = 104190

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 325   ggcctcgtcgtcagggccgcc 345
             |||||||||||||||||||||
Sbjct: 51217 ggcctcgtcgtcagggccgcc 51197
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>dbj|AK119213.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E07, full
           insert sequence
          Length = 877

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 325 ggcctcgtcgtcagggccgcc 345
           |||||||||||||||||||||
Sbjct: 240 ggcctcgtcgtcagggccgcc 260
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>dbj|AK073762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067L06, full
           insert sequence
          Length = 1111

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 325 ggcctcgtcgtcagggccgcc 345
           |||||||||||||||||||||
Sbjct: 241 ggcctcgtcgtcagggccgcc 261
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>emb|Z96239.1|HS12QT039 H.sapiens telomeric DNA sequence, clone 12QTEL039, read
           12QTELOO039.seq
          Length = 364

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 41  gctccatccaccactctctcc 61
           |||||||||||||||||||||
Sbjct: 145 gctccatccaccactctctcc 125
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>dbj|AK060474.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-F02, full
           insert sequence
          Length = 1056

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 325 ggcctcgtcgtcagggccgcc 345
           |||||||||||||||||||||
Sbjct: 242 ggcctcgtcgtcagggccgcc 262
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>gb|AE003484.3| Drosophila melanogaster chromosome X, section 36 of 74 of the complete
              sequence
          Length = 314111

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 159    ttttgtgtgctgttggcggtt 179
              |||||||||||||||||||||
Sbjct: 237259 ttttgtgtgctgttggcggtt 237279
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 227    tggcgtcggcggcgatggcga 247
              |||||||||||||||||||||
Sbjct: 551459 tggcgtcggcggcgatggcga 551479
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 57      tctccttctcccactccggc 76
               ||||||||||||||||||||
Sbjct: 4260982 tctccttctcccactccggc 4261001
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>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29
          Length = 303550

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    gcgtcggcggcgatggcgaa 248
              ||||||||||||||||||||
Sbjct: 250872 gcgtcggcggcgatggcgaa 250853
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 228    ggcgtcggcggcgatggcgaagcc 251
              |||| |||||||||||||||||||
Sbjct: 636541 ggcggcggcggcgatggcgaagcc 636564
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>gb|AC157772.4| Mus musculus chromosome 15, clone RP24-323B16, complete sequence
          Length = 182149

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   ctctctccttctcccactcc 73
            ||||||||||||||||||||
Sbjct: 2712 ctctctccttctcccactcc 2731



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   ctctctccttctcccactcc 73
            ||||||||||||||||||||
Sbjct: 2666 ctctctccttctcccactcc 2685
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 232      tcggcggcgatggcgaagccagcg 255
                ||||||||||||||| ||||||||
Sbjct: 18680761 tcggcggcgatggcggagccagcg 18680738
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 57      tctccttctcccactccggc 76
               ||||||||||||||||||||
Sbjct: 4261097 tctccttctcccactccggc 4261116
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>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21,
             complete sequence
          Length = 160456

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 232   tcggcggcgatggcgaagccagcg 255
             ||||||||||||||| ||||||||
Sbjct: 29899 tcggcggcgatggcggagccagcg 29876
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>gb|AC134507.2| Homo sapiens 3 BAC RP11-674K24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114169

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    ctctctccttctcccactcc 73
             ||||||||||||||||||||
Sbjct: 16369 ctctctccttctcccactcc 16388
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>gb|DQ335420.1| Kryptolebias marmoratus strain Honduras microsatellite R9 sequence
          Length = 277

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 41  gctccatccaccactctctccttc 64
           ||||||| ||||||||||||||||
Sbjct: 131 gctccattcaccactctctccttc 154
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>gb|AC122769.11| Mus musculus chromosome 15, clone RP24-153A12, complete sequence
          Length = 150945

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     ctctctccttctcccactcc 73
              ||||||||||||||||||||
Sbjct: 150681 ctctctccttctcccactcc 150700



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     ctctctccttctcccactcc 73
              ||||||||||||||||||||
Sbjct: 150635 ctctctccttctcccactcc 150654
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>dbj|AP004863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0023I17
          Length = 141852

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  cgtcggcggcgatggcgaag 249
            ||||||||||||||||||||
Sbjct: 4227 cgtcggcggcgatggcgaag 4246
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>dbj|AP004093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1661_C12
          Length = 122214

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   cgtcggcggcgatggcgaag 249
             ||||||||||||||||||||
Sbjct: 72255 cgtcggcggcgatggcgaag 72274
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>dbj|AK105435.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-F11, full
           insert sequence
          Length = 2699

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 232 tcggcggcgatggcgaagccagcg 255
           ||||||||||||||| ||||||||
Sbjct: 37  tcggcggcgatggcggagccagcg 60
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>gb|AC102534.10| Mus musculus chromosome 8, clone RP23-57G23, complete sequence
          Length = 223998

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 411   gacctctgaggataaaactg 430
             ||||||||||||||||||||
Sbjct: 75287 gacctctgaggataaaactg 75306
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>emb|CR974457.17| Mouse DNA sequence from clone RP23-319E15 on chromosome 17, complete
             sequence
          Length = 124639

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 37    cctcgctccatccaccactctctccttc 64
             |||| ||||||||||| |||||||||||
Sbjct: 59161 cctccctccatccacccctctctccttc 59188
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>gb|AF050157.1|MMHC135G15 Mus musculus major histocompatibility locus class II region: major
              histocompatibility protein class II alpha chain (IAalpha)
              and major histocompatibility protein class II beta chain
              (IEbeta) genes, complete cds; butyrophilin-like (NG9),
              butyrophilin-like (NG10), hypothetical protein (NG8), and
              butyrophilin-like (NG11) genes, partial cds; NG12
              pseudogene, partial sequence; and hypothetical
              butyrophilin-like protein (NG13) gene, partial cds
          Length = 245439

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 37     cctcgctccatccaccactctctccttc 64
              |||| ||||||||||| |||||||||||
Sbjct: 100329 cctccctccatccacccctctctccttc 100356
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>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0076N15, complete sequence
          Length = 134307

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    tctccttctcccactccggc 76
             ||||||||||||||||||||
Sbjct: 89597 tctccttctcccactccggc 89616


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,170,184
Number of Sequences: 3902068
Number of extensions: 3170184
Number of successful extensions: 70819
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70240
Number of HSP's gapped (non-prelim): 579
length of query: 486
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 464
effective length of database: 17,147,199,772
effective search space: 7956300694208
effective search space used: 7956300694208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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