ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast77g12 |
|---|---|
| Clone Library Name | barley_pub |
>GAI1_VITVI (Q8S4W7) DELLA protein GAI1 (Gibberellic acid-insensitive mutant| protein 1) (VvGAI1) Length = 590 Score = 89.0 bits (219), Expect = 3e-18 Identities = 38/60 (63%), Positives = 47/60 (78%) Frame = +1 Query: 121 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG 300 P++KF+HFTANQAI EAFE + RVH++D + QG+QWP L LA RPGGPP RLTG+G Sbjct: 292 PYLKFAHFTANQAILEAFEGKKRVHVIDFSMKQGMQWPALMQALALRPGGPPSFRLTGIG 351
>GAIPB_CUCMA (Q6EI05) DELLA protein GAIP-B (Gibberellic acid-insensitive phloem| protein B) (GAIP-B) (CmGAIP-B) Length = 587 Score = 87.8 bits (216), Expect = 6e-18 Identities = 38/61 (62%), Positives = 47/61 (77%) Frame = +1 Query: 118 SPFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGL 297 SP++KF+HFTANQAI EAFE + RVH++D + QG+QWP L LA RP GPP RLTG+ Sbjct: 295 SPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALLQALALRPSGPPAFRLTGI 354 Query: 298 G 300 G Sbjct: 355 G 355
>GAI_ARATH (Q9LQT8) DELLA protein GAI (Gibberellic acid-insensitive mutant| protein) (Restoration of growth on ammonia protein 2) Length = 533 Score = 87.8 bits (216), Expect = 6e-18 Identities = 38/60 (63%), Positives = 47/60 (78%) Frame = +1 Query: 121 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG 300 P++KF+HFTANQAI EAF+ + RVH++D + QGLQWP L LA RPGGPP RLTG+G Sbjct: 248 PYLKFAHFTANQAILEAFQGKKRVHVIDFSMSQGLQWPALMQALALRPGGPPVFRLTGIG 307
>GAI_GOSHI (Q84TQ7) DELLA protein GAI (Gibberellic acid-insensitive mutant| protein) (GhGAI) Length = 537 Score = 87.0 bits (214), Expect = 1e-17 Identities = 37/60 (61%), Positives = 45/60 (75%) Frame = +1 Query: 121 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG 300 P++KF+HFTANQAI EAF RVH++D + QG+QWP L LA RPGGPP RLTG+G Sbjct: 249 PYLKFAHFTANQAILEAFSMASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIG 308
>RGA_ARATH (Q9SLH3) DELLA protein RGA (Repressor on the ga1-3 mutant)| (GAI-related sequence) (Restoration of growth on ammonia protein 1) Length = 587 Score = 86.3 bits (212), Expect = 2e-17 Identities = 38/60 (63%), Positives = 46/60 (76%) Frame = +1 Query: 121 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG 300 P++KF+HFTANQAI EAFE + RVH++D + QGLQWP L LA R GGPP RLTG+G Sbjct: 300 PYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIG 359
>RGA1_BRACM (Q5BN23) DELLA protein RGA1 (RGA-like protein 1) (BrRGA1)| Length = 573 Score = 86.3 bits (212), Expect = 2e-17 Identities = 38/60 (63%), Positives = 46/60 (76%) Frame = +1 Query: 121 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG 300 P++KF+HFTANQAI EAFE + RVH++D + QGLQWP L LA R GGPP RLTG+G Sbjct: 287 PYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPSFRLTGIG 346
>GAIP_CUCMA (Q6EI06) DELLA protein GAIP (Gibberellic acid-insensitive phloem| protein) (GAIP) (CmGAIP) Length = 579 Score = 86.3 bits (212), Expect = 2e-17 Identities = 37/60 (61%), Positives = 46/60 (76%) Frame = +1 Query: 121 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG 300 P++KF+HFTANQAI EAFE + RVH++D + QG+QWP L LA RP GPP RLTG+G Sbjct: 289 PYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGIQWPALIQALALRPSGPPTFRLTGIG 348
>SLR1_ORYSA (Q7G7J6) DELLA protein SLR1 (Protein SLENDER RICE1) (Gibberellic| acid-insensitive mutant protein) (OsGAI) Length = 625 Score = 85.5 bits (210), Expect = 3e-17 Identities = 39/60 (65%), Positives = 45/60 (75%) Frame = +1 Query: 121 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG 300 P++KF+HFTANQAI EAF RVH+VD I QG+QWP L LA RPGGPP RLTG+G Sbjct: 321 PYLKFAHFTANQAILEAFAGCHRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVG 380
>RGA2_BRACM (Q5BN22) DELLA protein RGA2 (RGA-like protein 2) (BrRGA2)| Length = 579 Score = 85.5 bits (210), Expect = 3e-17 Identities = 38/60 (63%), Positives = 46/60 (76%) Frame = +1 Query: 121 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG 300 P++KF+HFTANQAI EAFE + RVH++D + QGLQWP L LA R GGPP RLTG+G Sbjct: 293 PYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPVFRLTGIG 352
>RHT1_WHEAT (Q9ST59) DELLA protein RHT-1 (Reduced height protein 1) (Protein| Rht-B1/Rht-D1) Length = 623 Score = 85.1 bits (209), Expect = 4e-17 Identities = 39/60 (65%), Positives = 45/60 (75%) Frame = +1 Query: 121 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG 300 P++KF+HFTANQAI EAF RVH+VD I QG+QWP L LA RPGGPP RLTG+G Sbjct: 315 PYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVG 374
>DWRF8_MAIZE (Q9ST48) DELLA protein DWARF8 (Protein dwarf-8)| Length = 630 Score = 85.1 bits (209), Expect = 4e-17 Identities = 39/60 (65%), Positives = 45/60 (75%) Frame = +1 Query: 121 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG 300 P++KF+HFTANQAI EAF RVH+VD I QG+QWP L LA RPGGPP RLTG+G Sbjct: 324 PYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVG 383
>SLN1_HORVU (Q8W127) DELLA protein SLN1 (Slender protein 1)| Length = 618 Score = 85.1 bits (209), Expect = 4e-17 Identities = 39/60 (65%), Positives = 45/60 (75%) Frame = +1 Query: 121 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG 300 P++KF+HFTANQAI EAF RVH+VD I QG+QWP L LA RPGGPP RLTG+G Sbjct: 311 PYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVG 370
>GAI_LYCES (Q7Y1B6) DELLA protein GAI (Gibberellic acid-insensitive mutant| protein) Length = 588 Score = 84.7 bits (208), Expect = 5e-17 Identities = 36/60 (60%), Positives = 46/60 (76%) Frame = +1 Query: 121 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG 300 P++KF+HFTANQAI EAF ++VH++D + QG+QWP L LA RPGGPP RLTG+G Sbjct: 277 PYLKFAHFTANQAILEAFTGCNKVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIG 336
>RGL2_ARATH (Q8GXW1) DELLA protein RGL2 (RGA-like protein 2) (Scarecrow-like| protein 19) Length = 547 Score = 84.3 bits (207), Expect = 7e-17 Identities = 37/60 (61%), Positives = 45/60 (75%) Frame = +1 Query: 121 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG 300 P++KF+HFTANQAI EA RVH++DL + QG+QWP L LA RPGGPP RLTG+G Sbjct: 263 PYLKFAHFTANQAILEAVTTARRVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGIG 322
>RGL1_ARATH (Q9C8Y3) DELLA protein RGL1 (RGA-like protein 1) (RGA-like protein)| Length = 511 Score = 82.0 bits (201), Expect = 3e-16 Identities = 35/60 (58%), Positives = 44/60 (73%) Frame = +1 Query: 121 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG 300 P++KF+HFTANQAI E F ++VH++DL + GLQWP L LA RP GPP RLTG+G Sbjct: 231 PYLKFAHFTANQAILEVFATAEKVHVIDLGLNHGLQWPALIQALALRPNGPPDFRLTGIG 290
>RGL3_ARATH (Q9LF53) DELLA protein RGL3 (RGA-like protein 3)| Length = 523 Score = 81.3 bits (199), Expect = 6e-16 Identities = 36/60 (60%), Positives = 44/60 (73%) Frame = +1 Query: 121 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG 300 P++KF+HFTANQAI EA VH++DL + QG+QWP L LA RPGGPP RLTG+G Sbjct: 236 PYLKFAHFTANQAILEAVTTSRVVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGVG 295
>MOC_ORYSA (Q84MM9) Protein MONOCULM 1| Length = 441 Score = 80.5 bits (197), Expect = 1e-15 Identities = 39/75 (52%), Positives = 51/75 (68%), Gaps = 3/75 (4%) Frame = +1 Query: 88 AAAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPG 267 + A+ FN I+PF++F+H TANQAI EA + RVHI+DLD + G+QWP L +A R Sbjct: 124 SGAYLAFNQIAPFLRFAHLTANQAILEAVDGARRVHILDLDAVHGVQWPPLLQAIAERAD 183 Query: 268 ---GPPRVRLTGLGA 303 GPP VR+TG GA Sbjct: 184 PALGPPEVRVTGAGA 198
>NSP2_MEDTR (Q5NE24) Nodulation signaling pathway 2 protein| Length = 508 Score = 79.7 bits (195), Expect = 2e-15 Identities = 39/69 (56%), Positives = 48/69 (69%) Frame = +1 Query: 91 AAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGG 270 AAFQ+ +SP+VKF HFTANQAI EA E RVH++D DIM+G+QW L LAS G Sbjct: 207 AAFQLLQDMSPYVKFGHFTANQAIIEAVAHERRVHVIDYDIMEGVQWASLIQSLASNNNG 266 Query: 271 PPRVRLTGL 297 P +R+T L Sbjct: 267 -PHLRITAL 274
>CIGR2_ORYSA (Q8GVE1) Chitin-inducible gibberellin-responsive protein 2| Length = 544 Score = 75.1 bits (183), Expect = 4e-14 Identities = 33/59 (55%), Positives = 42/59 (71%) Frame = +1 Query: 121 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGL 297 P+ KF + +AN AI EA + EDR+HI+D I QG QW L LA+RPGGPP VR+TG+ Sbjct: 259 PYFKFGYMSANGAIAEAVKGEDRIHIIDFHISQGAQWISLLQALAARPGGPPTVRITGI 317
>CIGR1_ORYSA (Q69VG1) Chitin-inducible gibberellin-responsive protein 1| Length = 571 Score = 75.1 bits (183), Expect = 4e-14 Identities = 33/66 (50%), Positives = 43/66 (65%) Frame = +1 Query: 100 QVFNGISPFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPR 279 ++ I P+ KF + AN AI EA E+ +HI+D I QG QW L LA+RPGGPPR Sbjct: 279 RILYNICPYFKFGYMAANGAIAEALRTENNIHIIDFQIAQGTQWITLIQALAARPGGPPR 338 Query: 280 VRLTGL 297 VR+TG+ Sbjct: 339 VRITGI 344
>NSP1_MEDTR (Q4VYC8) Nodulation signaling pathway 1 protein| Length = 554 Score = 48.9 bits (115), Expect = 3e-06 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Frame = +1 Query: 106 FNGISPFVKFSHFTANQAIQEAFEREDR----VHIVDLDIMQGLQWPGLFHILASRPGG- 270 F SP+ F + AN +I + E +HI+D+ + G+QWP L+ RPGG Sbjct: 249 FYEFSPWFSFPNNIANASILQVLAEEPNNLRTLHILDIGVSHGVQWPTFLEALSRRPGGP 308 Query: 271 PPRVRLTGLGA 303 PP VRLT + A Sbjct: 309 PPLVRLTVVNA 319
>BGAL_ENTCL (Q47077) Beta-galactosidase (EC 3.2.1.23) (Lactase)| Length = 1028 Score = 28.9 bits (63), Expect = 3.5 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Frame = +1 Query: 88 AAAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIVDLDI-----MQGLQWPGLFHIL 252 +A Q NG+ +FS+FTA + + +A+ ED V + + MQG P ++ Sbjct: 50 SARRQTLNGLW---RFSYFTAPEQVPQAWVTEDCADAVAMPVPSNWQMQGFDTPIYTNVT 106 Query: 253 ASRPGGPPRV 282 P PP V Sbjct: 107 YPIPVNPPFV 116
>DSG3_HUMAN (P32926) Desmoglein-3 precursor (130 kDa pemphigus vulgaris| antigen) (PVA) Length = 999 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = +2 Query: 218 RGFSGRDCSTSSPPARAARPGSGSLGSA 301 RG G T+SP R RP SG LG A Sbjct: 592 RGICGTSYPTTSPGTRYGRPHSGRLGPA 619
>MUTS_LACJO (P61668) DNA mismatch repair protein mutS| Length = 857 Score = 28.1 bits (61), Expect = 5.9 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -1 Query: 243 EQSRPLKPLHDVEVHDVDAVLPLERLLDGLVRREVGE-LDEGADAVEH 103 +Q PLK +HD+ V+ + PL GL+R V E LD DA+ + Sbjct: 386 KQIDPLKGIHDLIVNTIVDNPPLPTTEGGLIREGVSEQLDRYRDAMNN 433 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,915,165 Number of Sequences: 219361 Number of extensions: 492158 Number of successful extensions: 2546 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2464 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2545 length of database: 80,573,946 effective HSP length: 76 effective length of database: 63,902,510 effective search space used: 1533660240 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
