ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast77g10 |
|---|---|
| Clone Library Name | barley_pub |
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 43.5 bits (101), Expect(2) = 7e-08 Identities = 20/24 (83%), Positives = 23/24 (95%) Frame = +1 Query: 268 LKVFVGNLPFTVDSAQLAGLFEQA 339 LK+FVGNLPF+VDSA LAGLFE+A Sbjct: 87 LKLFVGNLPFSVDSAALAGLFERA 110 Score = 30.4 bits (67), Expect(2) = 7e-08 Identities = 12/15 (80%), Positives = 15/15 (100%) Frame = +2 Query: 347 VEMVEVVYDRMTGRS 391 VEMVEV+YD++TGRS Sbjct: 113 VEMVEVIYDKLTGRS 127
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 42.0 bits (97), Expect(2) = 3e-07 Identities = 20/24 (83%), Positives = 21/24 (87%) Frame = +1 Query: 268 LKVFVGNLPFTVDSAQLAGLFEQA 339 LK+FVGNLPF VDSAQLA LFE A Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESA 114 Score = 30.0 bits (66), Expect(2) = 3e-07 Identities = 12/15 (80%), Positives = 15/15 (100%) Frame = +2 Query: 347 VEMVEVVYDRMTGRS 391 VEMVEV+YD++TGRS Sbjct: 117 VEMVEVIYDKITGRS 131
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 43.5 bits (101), Expect(2) = 6e-07 Identities = 20/24 (83%), Positives = 23/24 (95%) Frame = +1 Query: 268 LKVFVGNLPFTVDSAQLAGLFEQA 339 LK+FVGNLPF+VDSA LAGLFE+A Sbjct: 88 LKLFVGNLPFSVDSAALAGLFERA 111 Score = 27.3 bits (59), Expect(2) = 6e-07 Identities = 10/15 (66%), Positives = 15/15 (100%) Frame = +2 Query: 347 VEMVEVVYDRMTGRS 391 VE+VEV+YD+++GRS Sbjct: 114 VEIVEVIYDKLSGRS 128
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 39.7 bits (91), Expect(2) = 1e-06 Identities = 18/24 (75%), Positives = 21/24 (87%) Frame = +1 Query: 268 LKVFVGNLPFTVDSAQLAGLFEQA 339 LK+FVGNLPF+ DSA LA LFE+A Sbjct: 87 LKIFVGNLPFSADSAALAELFERA 110 Score = 30.4 bits (67), Expect(2) = 1e-06 Identities = 12/15 (80%), Positives = 15/15 (100%) Frame = +2 Query: 347 VEMVEVVYDRMTGRS 391 VEMVEV+YD++TGRS Sbjct: 113 VEMVEVIYDKLTGRS 127
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 38.9 bits (89), Expect(2) = 2e-06 Identities = 19/24 (79%), Positives = 20/24 (83%) Frame = +1 Query: 268 LKVFVGNLPFTVDSAQLAGLFEQA 339 LK+FVGNL F VDSAQLA LFE A Sbjct: 99 LKLFVGNLSFNVDSAQLAQLFESA 122 Score = 30.0 bits (66), Expect(2) = 2e-06 Identities = 12/15 (80%), Positives = 15/15 (100%) Frame = +2 Query: 347 VEMVEVVYDRMTGRS 391 VEMVEV+YD++TGRS Sbjct: 125 VEMVEVIYDKVTGRS 139
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 35.8 bits (81), Expect(2) = 1e-05 Identities = 17/24 (70%), Positives = 20/24 (83%) Frame = +1 Query: 268 LKVFVGNLPFTVDSAQLAGLFEQA 339 LK+FVGNL F+ DSA LA LFE+A Sbjct: 87 LKIFVGNLLFSADSAALAELFERA 110 Score = 30.4 bits (67), Expect(2) = 1e-05 Identities = 12/15 (80%), Positives = 15/15 (100%) Frame = +2 Query: 347 VEMVEVVYDRMTGRS 391 VEMVEV+YD++TGRS Sbjct: 113 VEMVEVIYDKLTGRS 127
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 36.2 bits (82), Expect(2) = 0.002 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = +1 Query: 271 KVFVGNLPFTVDSAQLAGLFEQA 339 K+FVGNLP+ VDS +LAG+F+ A Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAA 78 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/22 (50%), Positives = 18/22 (81%) Frame = +1 Query: 271 KVFVGNLPFTVDSAQLAGLFEQ 336 +V+VGNLP+ VD+++L LF + Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSE 171 Score = 22.3 bits (46), Expect(2) = 0.002 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +2 Query: 347 VEMVEVVYDRMTGRS 391 VE+ EV+Y+R T RS Sbjct: 81 VEIAEVIYNRETDRS 95
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 34.7 bits (78), Expect(2) = 0.006 Identities = 15/23 (65%), Positives = 19/23 (82%) Frame = +1 Query: 271 KVFVGNLPFTVDSAQLAGLFEQA 339 K+FVGNLP+ +DS LA LF+QA Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQA 120 Score = 22.3 bits (46), Expect(2) = 0.006 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +2 Query: 347 VEMVEVVYDRMTGRS 391 VE+ EV+Y+R T RS Sbjct: 123 VEIAEVIYNRETDRS 137
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 36.2 bits (82), Expect = 0.019 Identities = 17/23 (73%), Positives = 19/23 (82%) Frame = +1 Query: 271 KVFVGNLPFTVDSAQLAGLFEQA 339 K+FVGNLP+ VDS LA LFEQA Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQA 159 Score = 27.3 bits (59), Expect(2) = 0.96 Identities = 9/22 (40%), Positives = 17/22 (77%) Frame = +1 Query: 271 KVFVGNLPFTVDSAQLAGLFEQ 336 +++VGN+P+ +D A+L LF + Sbjct: 231 RIYVGNIPWGIDDARLEQLFSE 252 Score = 21.9 bits (45), Expect(2) = 0.96 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +2 Query: 347 VEMVEVVYDRMTGRS 391 V VVYDR TGRS Sbjct: 256 VVSARVVYDRETGRS 270
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 30.0 bits (66), Expect(2) = 0.059 Identities = 11/23 (47%), Positives = 20/23 (86%) Frame = +1 Query: 271 KVFVGNLPFTVDSAQLAGLFEQA 339 +++VGNLPF++ S+QL+ +F +A Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEA 137 Score = 23.5 bits (49), Expect(2) = 0.059 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +2 Query: 347 VEMVEVVYDRMTGRS 391 V VE+VYDR+T RS Sbjct: 140 VANVEIVYDRVTDRS 154
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 31.2 bits (69), Expect(2) = 0.16 Identities = 15/23 (65%), Positives = 18/23 (78%) Frame = +1 Query: 271 KVFVGNLPFTVDSAQLAGLFEQA 339 K+FVGNL + V+S LA LFEQA Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQA 173 Score = 28.1 bits (61), Expect(2) = 0.74 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = +1 Query: 271 KVFVGNLPFTVDSAQLAGLFEQ 336 +V+VGNLP+ VD+ +L LF + Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSE 266 Score = 21.6 bits (44), Expect(2) = 0.74 Identities = 9/10 (90%), Positives = 9/10 (90%) Frame = +2 Query: 362 VVYDRMTGRS 391 VVYDR TGRS Sbjct: 275 VVYDRETGRS 284 Score = 20.8 bits (42), Expect(2) = 0.16 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +2 Query: 347 VEMVEVVYDRMTGRS 391 VE+ EV+Y+R T +S Sbjct: 176 VEIAEVIYNRETDQS 190
>RNP1_CAEEL (Q10667) RNA-binding protein rnp-1| Length = 305 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +1 Query: 271 KVFVGNLPFTVDSAQLAGLFEQAC 342 K+FVGNLP VDS +L +F+ C Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFC 27 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,351,558 Number of Sequences: 219361 Number of extensions: 146839 Number of successful extensions: 698 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 668 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 698 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
