| Clone Name | bast77f09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_507434.1| PREDICTED Oryza sativa (japonica cultivar-group), P0576F08.10 mRNA Length = 1378 Score = 472 bits (238), Expect = e-130 Identities = 394/446 (88%) Strand = Plus / Plus Query: 2 cagtgtccaaatggccacacaatttgctccagctgtaagcatagggtagacaaccattgc 61 ||||| |||||||| |||||||| ||||| | ||| ||||||||||| || || |||||| Sbjct: 429 cagtgcccaaatggtcacacaatatgctctaactgcaagcatagggtggagaatcattgc 488 Query: 62 cccacttgccgccaggaactgggaaatatcagatgcttggctctcgagaaggtggccgaa 121 || ||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| || Sbjct: 489 cctacttgtcgccaagaactgggtaatatcagatgtttggctcttgagaaggtggctgag 548 Query: 122 tcgatccagcttccatgcaagtaccaaagcctgggctgcaccgagatccatccttaccag 181 || | |||||||||||||| || |||||||| ||||| | ||||| ||||||||||| Sbjct: 549 tcacttcagcttccatgcaaatatcaaagcctaggctgtgctgagattcatccttaccaa 608 Query: 182 aacaaacttaagcatgaggagatctgcaggttcaggccatacagctgtccatacgcaggt 241 ||||||||||||||||||||| ||||||||||||||||||| || |||||||| |||||| Sbjct: 609 aacaaacttaagcatgaggagctctgcaggttcaggccatatagttgtccatatgcaggt 668 Query: 242 tcagagtgcctgatcgcaggcgacgttccgatgctcgtgtctcatctcatcaacgaccac 301 ||||| |||||||| || ||||| ||||||||||| || ||||||||||| |||||||| Sbjct: 669 tcagaatgcctgattgctggcgatgttccgatgcttgtctctcatctcataaacgaccat 728 Query: 302 aaggtggacttgcacgaaggctgcacctttaaccaccgctacgtgaagtccaacccttac 361 |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 729 aaggtggacttgcatgaaggctgcacctttaaccaccgttatgtgaagtccaacccttat 788 Query: 362 gaagtggaaaacgcgacatggatgctcactgtgttcaagtgttttggtcagcacttctgc 421 |||||||||||||| ||||||||||| || || |||||||||||||| |||||||||||| Sbjct: 789 gaagtggaaaacgctacatggatgctgacggttttcaagtgttttggacagcacttctgc 848 Query: 422 ctccactttgaggcgttcctgctggg 447 || || |||||||| ||||||||||| Sbjct: 849 ctgcattttgaggcattcctgctggg 874
>ref|XM_463983.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1312 Score = 472 bits (238), Expect = e-130 Identities = 394/446 (88%) Strand = Plus / Plus Query: 2 cagtgtccaaatggccacacaatttgctccagctgtaagcatagggtagacaaccattgc 61 ||||| |||||||| |||||||| ||||| | ||| ||||||||||| || || |||||| Sbjct: 356 cagtgcccaaatggtcacacaatatgctctaactgcaagcatagggtggagaatcattgc 415 Query: 62 cccacttgccgccaggaactgggaaatatcagatgcttggctctcgagaaggtggccgaa 121 || ||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| || Sbjct: 416 cctacttgtcgccaagaactgggtaatatcagatgtttggctcttgagaaggtggctgag 475 Query: 122 tcgatccagcttccatgcaagtaccaaagcctgggctgcaccgagatccatccttaccag 181 || | |||||||||||||| || |||||||| ||||| | ||||| ||||||||||| Sbjct: 476 tcacttcagcttccatgcaaatatcaaagcctaggctgtgctgagattcatccttaccaa 535 Query: 182 aacaaacttaagcatgaggagatctgcaggttcaggccatacagctgtccatacgcaggt 241 ||||||||||||||||||||| ||||||||||||||||||| || |||||||| |||||| Sbjct: 536 aacaaacttaagcatgaggagctctgcaggttcaggccatatagttgtccatatgcaggt 595 Query: 242 tcagagtgcctgatcgcaggcgacgttccgatgctcgtgtctcatctcatcaacgaccac 301 ||||| |||||||| || ||||| ||||||||||| || ||||||||||| |||||||| Sbjct: 596 tcagaatgcctgattgctggcgatgttccgatgcttgtctctcatctcataaacgaccat 655 Query: 302 aaggtggacttgcacgaaggctgcacctttaaccaccgctacgtgaagtccaacccttac 361 |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 656 aaggtggacttgcatgaaggctgcacctttaaccaccgttatgtgaagtccaacccttat 715 Query: 362 gaagtggaaaacgcgacatggatgctcactgtgttcaagtgttttggtcagcacttctgc 421 |||||||||||||| ||||||||||| || || |||||||||||||| |||||||||||| Sbjct: 716 gaagtggaaaacgctacatggatgctgacggttttcaagtgttttggacagcacttctgc 775 Query: 422 ctccactttgaggcgttcctgctggg 447 || || |||||||| ||||||||||| Sbjct: 776 ctgcattttgaggcattcctgctggg 801
>ref|XM_506704.2| PREDICTED Oryza sativa (japonica cultivar-group), P0576F08.10 mRNA Length = 1338 Score = 472 bits (238), Expect = e-130 Identities = 394/446 (88%) Strand = Plus / Plus Query: 2 cagtgtccaaatggccacacaatttgctccagctgtaagcatagggtagacaaccattgc 61 ||||| |||||||| |||||||| ||||| | ||| ||||||||||| || || |||||| Sbjct: 356 cagtgcccaaatggtcacacaatatgctctaactgcaagcatagggtggagaatcattgc 415 Query: 62 cccacttgccgccaggaactgggaaatatcagatgcttggctctcgagaaggtggccgaa 121 || ||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| || Sbjct: 416 cctacttgtcgccaagaactgggtaatatcagatgtttggctcttgagaaggtggctgag 475 Query: 122 tcgatccagcttccatgcaagtaccaaagcctgggctgcaccgagatccatccttaccag 181 || | |||||||||||||| || |||||||| ||||| | ||||| ||||||||||| Sbjct: 476 tcacttcagcttccatgcaaatatcaaagcctaggctgtgctgagattcatccttaccaa 535 Query: 182 aacaaacttaagcatgaggagatctgcaggttcaggccatacagctgtccatacgcaggt 241 ||||||||||||||||||||| ||||||||||||||||||| || |||||||| |||||| Sbjct: 536 aacaaacttaagcatgaggagctctgcaggttcaggccatatagttgtccatatgcaggt 595 Query: 242 tcagagtgcctgatcgcaggcgacgttccgatgctcgtgtctcatctcatcaacgaccac 301 ||||| |||||||| || ||||| ||||||||||| || ||||||||||| |||||||| Sbjct: 596 tcagaatgcctgattgctggcgatgttccgatgcttgtctctcatctcataaacgaccat 655 Query: 302 aaggtggacttgcacgaaggctgcacctttaaccaccgctacgtgaagtccaacccttac 361 |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 656 aaggtggacttgcatgaaggctgcacctttaaccaccgttatgtgaagtccaacccttat 715 Query: 362 gaagtggaaaacgcgacatggatgctcactgtgttcaagtgttttggtcagcacttctgc 421 |||||||||||||| ||||||||||| || || |||||||||||||| |||||||||||| Sbjct: 716 gaagtggaaaacgctacatggatgctgacggttttcaagtgttttggacagcacttctgc 775 Query: 422 ctccactttgaggcgttcctgctggg 447 || || |||||||| ||||||||||| Sbjct: 776 ctgcattttgaggcattcctgctggg 801
>dbj|AK119901.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-D02, full insert sequence Length = 1359 Score = 472 bits (238), Expect = e-130 Identities = 394/446 (88%) Strand = Plus / Plus Query: 2 cagtgtccaaatggccacacaatttgctccagctgtaagcatagggtagacaaccattgc 61 ||||| |||||||| |||||||| ||||| | ||| ||||||||||| || || |||||| Sbjct: 356 cagtgcccaaatggtcacacaatatgctctaactgcaagcatagggtggagaatcattgc 415 Query: 62 cccacttgccgccaggaactgggaaatatcagatgcttggctctcgagaaggtggccgaa 121 || ||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| || Sbjct: 416 cctacttgtcgccaagaactgggtaatatcagatgtttggctcttgagaaggtggctgag 475 Query: 122 tcgatccagcttccatgcaagtaccaaagcctgggctgcaccgagatccatccttaccag 181 || | |||||||||||||| || |||||||| ||||| | ||||| ||||||||||| Sbjct: 476 tcacttcagcttccatgcaaatatcaaagcctaggctgtgctgagattcatccttaccaa 535 Query: 182 aacaaacttaagcatgaggagatctgcaggttcaggccatacagctgtccatacgcaggt 241 ||||||||||||||||||||| ||||||||||||||||||| || |||||||| |||||| Sbjct: 536 aacaaacttaagcatgaggagctctgcaggttcaggccatatagttgtccatatgcaggt 595 Query: 242 tcagagtgcctgatcgcaggcgacgttccgatgctcgtgtctcatctcatcaacgaccac 301 ||||| |||||||| || ||||| ||||||||||| || ||||||||||| |||||||| Sbjct: 596 tcagaatgcctgattgctggcgatgttccgatgcttgtctctcatctcataaacgaccat 655 Query: 302 aaggtggacttgcacgaaggctgcacctttaaccaccgctacgtgaagtccaacccttac 361 |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 656 aaggtggacttgcatgaaggctgcacctttaaccaccgttatgtgaagtccaacccttat 715 Query: 362 gaagtggaaaacgcgacatggatgctcactgtgttcaagtgttttggtcagcacttctgc 421 |||||||||||||| ||||||||||| || || |||||||||||||| |||||||||||| Sbjct: 716 gaagtggaaaacgctacatggatgctgacggttttcaagtgttttggacagcacttctgc 775 Query: 422 ctccactttgaggcgttcctgctggg 447 || || |||||||| ||||||||||| Sbjct: 776 ctgcattttgaggcattcctgctggg 801
>dbj|AK104468.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D04, full insert sequence Length = 1312 Score = 472 bits (238), Expect = e-130 Identities = 394/446 (88%) Strand = Plus / Plus Query: 2 cagtgtccaaatggccacacaatttgctccagctgtaagcatagggtagacaaccattgc 61 ||||| |||||||| |||||||| ||||| | ||| ||||||||||| || || |||||| Sbjct: 356 cagtgcccaaatggtcacacaatatgctctaactgcaagcatagggtggagaatcattgc 415 Query: 62 cccacttgccgccaggaactgggaaatatcagatgcttggctctcgagaaggtggccgaa 121 || ||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| || Sbjct: 416 cctacttgtcgccaagaactgggtaatatcagatgtttggctcttgagaaggtggctgag 475 Query: 122 tcgatccagcttccatgcaagtaccaaagcctgggctgcaccgagatccatccttaccag 181 || | |||||||||||||| || |||||||| ||||| | ||||| ||||||||||| Sbjct: 476 tcacttcagcttccatgcaaatatcaaagcctaggctgtgctgagattcatccttaccaa 535 Query: 182 aacaaacttaagcatgaggagatctgcaggttcaggccatacagctgtccatacgcaggt 241 ||||||||||||||||||||| ||||||||||||||||||| || |||||||| |||||| Sbjct: 536 aacaaacttaagcatgaggagctctgcaggttcaggccatatagttgtccatatgcaggt 595 Query: 242 tcagagtgcctgatcgcaggcgacgttccgatgctcgtgtctcatctcatcaacgaccac 301 ||||| |||||||| || ||||| ||||||||||| || ||||||||||| |||||||| Sbjct: 596 tcagaatgcctgattgctggcgatgttccgatgcttgtctctcatctcataaacgaccat 655 Query: 302 aaggtggacttgcacgaaggctgcacctttaaccaccgctacgtgaagtccaacccttac 361 |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 656 aaggtggacttgcatgaaggctgcacctttaaccaccgttatgtgaagtccaacccttat 715 Query: 362 gaagtggaaaacgcgacatggatgctcactgtgttcaagtgttttggtcagcacttctgc 421 |||||||||||||| ||||||||||| || || |||||||||||||| |||||||||||| Sbjct: 716 gaagtggaaaacgctacatggatgctgacggttttcaagtgttttggacagcacttctgc 775 Query: 422 ctccactttgaggcgttcctgctggg 447 || || |||||||| ||||||||||| Sbjct: 776 ctgcattttgaggcattcctgctggg 801
>dbj|AK111795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105K22, full insert sequence Length = 1378 Score = 464 bits (234), Expect = e-127 Identities = 393/446 (88%) Strand = Plus / Plus Query: 2 cagtgtccaaatggccacacaatttgctccagctgtaagcatagggtagacaaccattgc 61 ||||| |||||||| |||||||| ||||| | ||| ||||||||||| || || |||||| Sbjct: 429 cagtgcccaaatggtcacacaatatgctctaactgcaagcatagggtggagaatcattgc 488 Query: 62 cccacttgccgccaggaactgggaaatatcagatgcttggctctcgagaaggtggccgaa 121 || ||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| || Sbjct: 489 cctacttgtcgccaagaactgggtaatatcagatgtttggctcttgagaaggtggctgag 548 Query: 122 tcgatccagcttccatgcaagtaccaaagcctgggctgcaccgagatccatccttaccag 181 || | |||||||||||||| || |||||||| ||||| | ||||| ||||||||||| Sbjct: 549 tcacttcagcttccatgcaaatatcaaagcctaggctgtgctgagattcatccttaccaa 608 Query: 182 aacaaacttaagcatgaggagatctgcaggttcaggccatacagctgtccatacgcaggt 241 ||||||||||||||||||||| ||||||||||||||||||| || |||||||| |||||| Sbjct: 609 aacaaacttaagcatgaggagctctgcaggttcaggccatatagttgtccatatgcaggt 668 Query: 242 tcagagtgcctgatcgcaggcgacgttccgatgctcgtgtctcatctcatcaacgaccac 301 ||||| |||||||| || ||||| ||||||||||| || ||||||||||| |||||||| Sbjct: 669 tcagaatgcctgattgctggcgatgttccgatgcttgtctctcatctcataaacgaccat 728 Query: 302 aaggtggacttgcacgaaggctgcacctttaaccaccgctacgtgaagtccaacccttac 361 |||||||||||||| |||||||||||| |||||||||| || ||||||||||||||||| Sbjct: 729 aaggtggacttgcatgaaggctgcacccttaaccaccgttatgtgaagtccaacccttat 788 Query: 362 gaagtggaaaacgcgacatggatgctcactgtgttcaagtgttttggtcagcacttctgc 421 |||||||||||||| ||||||||||| || || |||||||||||||| |||||||||||| Sbjct: 789 gaagtggaaaacgctacatggatgctgacggttttcaagtgttttggacagcacttctgc 848 Query: 422 ctccactttgaggcgttcctgctggg 447 || || |||||||| ||||||||||| Sbjct: 849 ctgcattttgaggcattcctgctggg 874
>dbj|AK111954.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D05, full insert sequence Length = 937 Score = 448 bits (226), Expect = e-123 Identities = 364/410 (88%) Strand = Plus / Plus Query: 38 aagcatagggtagacaaccattgccccacttgccgccaggaactgggaaatatcagatgc 97 ||||||||||| || || |||||||| ||||| ||||| |||||||| ||||||||||| Sbjct: 17 aagcatagggtggagaatcattgccctacttgtcgccaagaactgggtaatatcagatgt 76 Query: 98 ttggctctcgagaaggtggccgaatcgatccagcttccatgcaagtaccaaagcctgggc 157 |||||||| ||||||||||| || || | |||||||||||||| || |||||||| ||| Sbjct: 77 ttggctcttgagaaggtggctgagtcacttcagcttccatgcaaatatcaaagcctaggc 136 Query: 158 tgcaccgagatccatccttaccagaacaaacttaagcatgaggagatctgcaggttcagg 217 || | ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct: 137 tgtgctgagattcatccttaccaaaacaaacttaagcatgaggagctctgcaggttcagg 196 Query: 218 ccatacagctgtccatacgcaggttcagagtgcctgatcgcaggcgacgttccgatgctc 277 ||||| || |||||||| ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 197 ccatatagttgtccatatgcaggttcagaatgcctgattgctggcgatgttccgatgctt 256 Query: 278 gtgtctcatctcatcaacgaccacaaggtggacttgcacgaaggctgcacctttaaccac 337 || ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| Sbjct: 257 gtctctcatctcataaacgaccataaggtggacttgcatgaaggctgcacctttaaccac 316 Query: 338 cgctacgtgaagtccaacccttacgaagtggaaaacgcgacatggatgctcactgtgttc 397 || || ||||||||||||||||| |||||||||||||| ||||||||||| || || ||| Sbjct: 317 cgttatgtgaagtccaacccttatgaagtggaaaacgctacatggatgctgacggttttc 376 Query: 398 aagtgttttggtcagcacttctgcctccactttgaggcgttcctgctggg 447 ||||||||||| |||||||||||||| || |||||||| ||||||||||| Sbjct: 377 aagtgttttggacagcacttctgcctgcattttgaggcattcctgctggg 426
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 408 bits (206), Expect = e-111 Identities = 341/386 (88%) Strand = Plus / Minus Query: 2 cagtgtccaaatggccacacaatttgctccagctgtaagcatagggtagacaaccattgc 61 ||||| |||||||| |||||||| ||||| | ||| ||||||||||| || || |||||| Sbjct: 1482472 cagtgcccaaatggtcacacaatatgctctaactgcaagcatagggtggagaatcattgc 1482413 Query: 62 cccacttgccgccaggaactgggaaatatcagatgcttggctctcgagaaggtggccgaa 121 || ||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| || Sbjct: 1482412 cctacttgtcgccaagaactgggtaatatcagatgtttggctcttgagaaggtggctgag 1482353 Query: 122 tcgatccagcttccatgcaagtaccaaagcctgggctgcaccgagatccatccttaccag 181 || | |||||||||||||| || |||||||| ||||| | ||||| ||||||||||| Sbjct: 1482352 tcacttcagcttccatgcaaatatcaaagcctaggctgtgctgagattcatccttaccaa 1482293 Query: 182 aacaaacttaagcatgaggagatctgcaggttcaggccatacagctgtccatacgcaggt 241 ||||||||||||||||||||| ||||||||||||||||||| || |||||||| |||||| Sbjct: 1482292 aacaaacttaagcatgaggagctctgcaggttcaggccatatagttgtccatatgcaggt 1482233 Query: 242 tcagagtgcctgatcgcaggcgacgttccgatgctcgtgtctcatctcatcaacgaccac 301 ||||| |||||||| || ||||| ||||||||||| || ||||||||||| |||||||| Sbjct: 1482232 tcagaatgcctgattgctggcgatgttccgatgcttgtctctcatctcataaacgaccat 1482173 Query: 302 aaggtggacttgcacgaaggctgcacctttaaccaccgctacgtgaagtccaacccttac 361 |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 1482172 aaggtggacttgcatgaaggctgcacctttaaccaccgttatgtgaagtccaacccttat 1482113 Query: 362 gaagtggaaaacgcgacatggatgct 387 |||||||||||||| ||||||||||| Sbjct: 1482112 gaagtggaaaacgctacatggatgct 1482087 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 395 ttcaagtgttttggtcagcacttctgcctccactttgaggcgttcctgctggg 447 |||||||||||||| |||||||||||||| || |||||||| ||||||||||| Sbjct: 1481828 ttcaagtgttttggacagcacttctgcctgcattttgaggcattcctgctggg 1481776
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0576F08 Length = 135314 Score = 408 bits (206), Expect = e-111 Identities = 341/386 (88%) Strand = Plus / Minus Query: 2 cagtgtccaaatggccacacaatttgctccagctgtaagcatagggtagacaaccattgc 61 ||||| |||||||| |||||||| ||||| | ||| ||||||||||| || || |||||| Sbjct: 45893 cagtgcccaaatggtcacacaatatgctctaactgcaagcatagggtggagaatcattgc 45834 Query: 62 cccacttgccgccaggaactgggaaatatcagatgcttggctctcgagaaggtggccgaa 121 || ||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| || Sbjct: 45833 cctacttgtcgccaagaactgggtaatatcagatgtttggctcttgagaaggtggctgag 45774 Query: 122 tcgatccagcttccatgcaagtaccaaagcctgggctgcaccgagatccatccttaccag 181 || | |||||||||||||| || |||||||| ||||| | ||||| ||||||||||| Sbjct: 45773 tcacttcagcttccatgcaaatatcaaagcctaggctgtgctgagattcatccttaccaa 45714 Query: 182 aacaaacttaagcatgaggagatctgcaggttcaggccatacagctgtccatacgcaggt 241 ||||||||||||||||||||| ||||||||||||||||||| || |||||||| |||||| Sbjct: 45713 aacaaacttaagcatgaggagctctgcaggttcaggccatatagttgtccatatgcaggt 45654 Query: 242 tcagagtgcctgatcgcaggcgacgttccgatgctcgtgtctcatctcatcaacgaccac 301 ||||| |||||||| || ||||| ||||||||||| || ||||||||||| |||||||| Sbjct: 45653 tcagaatgcctgattgctggcgatgttccgatgcttgtctctcatctcataaacgaccat 45594 Query: 302 aaggtggacttgcacgaaggctgcacctttaaccaccgctacgtgaagtccaacccttac 361 |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 45593 aaggtggacttgcatgaaggctgcacctttaaccaccgttatgtgaagtccaacccttat 45534 Query: 362 gaagtggaaaacgcgacatggatgct 387 |||||||||||||| ||||||||||| Sbjct: 45533 gaagtggaaaacgctacatggatgct 45508 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 395 ttcaagtgttttggtcagcacttctgcctccactttgaggcgttcctgctggg 447 |||||||||||||| |||||||||||||| || |||||||| ||||||||||| Sbjct: 45249 ttcaagtgttttggacagcacttctgcctgcattttgaggcattcctgctggg 45197
>gb|AY108731.1| Zea mays PCO091740 mRNA sequence Length = 1475 Score = 396 bits (200), Expect = e-107 Identities = 396/460 (86%), Gaps = 1/460 (0%) Strand = Plus / Plus Query: 2 cagtgtccaaatggccacacaatttgctccagctgtaagcatagggtagacaaccattgc 61 ||||| |||||||||||||| || ||||| || || ||||| |||||||| ||||||||| Sbjct: 454 cagtgcccaaatggccacacgatctgctctagttgcaagcacagggtagagaaccattgc 513 Query: 62 cccacttgccgccagg-aactgggaaatatcagatgcttggctctcgagaaggtggccga 120 || || || ||||||| |||||||||| ||||| ||| | ||||||||||||||||| || Sbjct: 514 ccaacctgtcgccagggaactgggaaacatcaggtgcctagctctcgagaaggtggcaga 573 Query: 121 atcgatccagcttccatgcaagtaccaaagcctgggctgcaccgagatccatccttacca 180 |||||||||| ||||||||||| ||| ||| |||||||||||||| || ||| | Sbjct: 574 gcaactccagcttccgtgcaagtaccagagcacgggatgcaccgagatccacccatacaa 633 Query: 181 gaacaaacttaagcatgaggagatctgcaggttcaggccatacagctgtccatacgcagg 240 || |||||| ||||| |||||| |||||||||||||||| |||||||| || |||||||| Sbjct: 634 gagcaaactgaagcacgaggagctctgcaggttcaggccgtacagctgcccgtacgcagg 693 Query: 241 ttcagagtgcctgatcgcaggcgacgttccgatgctcgtgtctcatctcatcaacgacca 300 ||| ||||||||||||||||||||||| ||| | || ||||| ||||||||||||||||| Sbjct: 694 ttccgagtgcctgatcgcaggcgacgtcccgttcctggtgtcccatctcatcaacgacca 753 Query: 301 caaggtggacttgcacgaaggctgcacctttaaccaccgctacgtgaagtccaaccctta 360 ||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||| || Sbjct: 754 taaggtggacttgcacgagggctgcacgttcaaccaccggtacgtgaagcccaacccgta 813 Query: 361 cgaagtggaaaacgcgacatggatgctcactgtgttcaagtgttttggtcagcacttctg 420 ||| ||||| || || || |||||||||||||| ||||||||||| || ||||||||||| Sbjct: 814 cgaggtggagaatgccacgtggatgctcactgttttcaagtgtttcgggcagcacttctg 873 Query: 421 cctccactttgaggcgttcctgctgggcatgtccccggtg 460 ||| ||||| ||||||||| ||||||| ||| | |||||| Sbjct: 874 cctgcacttcgaggcgttcgtgctggggatggcgccggtg 913
>gb|AY111019.1| Zea mays CL5847_1 mRNA sequence Length = 1435 Score = 83.8 bits (42), Expect = 5e-13 Identities = 129/158 (81%) Strand = Plus / Plus Query: 296 gaccacaaggtggacttgcacgaaggctgcacctttaaccaccgctacgtgaagtccaac 355 |||||||| || ||| ||||| | ||||| ||||| ||||| ||||| || ||| | ||| Sbjct: 720 gaccacaaagttgacatgcacaacggctgtaccttcaaccatcgctatgtaaagccaaac 779 Query: 356 ccttacgaagtggaaaacgcgacatggatgctcactgtgttcaagtgttttggtcagcac 415 ||| | ||||| || ||||| || |||||||| || || |||| || ||||| ||| || Sbjct: 780 cctcatgaagttgagaacgccacctggatgcttacggtattcagctgctttggccagtac 839 Query: 416 ttctgcctccactttgaggcgttcctgctgggcatgtc 453 |||||||| ||||||||||| |||| |||||||||||| Sbjct: 840 ttctgcctacactttgaggccttccagctgggcatgtc 877
>gb|AF175124.1|AF175124 Gossypium hirsutum SINAH1 protein mRNA, complete cds Length = 1262 Score = 73.8 bits (37), Expect = 5e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 320 ggctgcacctttaaccaccgctacgtgaagtccaacccttacgaagtggaaaacgcgaca 379 |||||||| ||||| || || |||||||| ||||||||| ||||| ||||| || ||| Sbjct: 660 ggctgcacatttaatcatcgatacgtgaaatccaaccctcgggaagttgaaaatgctaca 719 Query: 380 tggatgctcactgtgttcaagtgttttggtcagcacttctgcctccactttga 432 |||||||| || || ||| | |||||||||||| | |||||||| |||||||| Sbjct: 720 tggatgctaacagtattccattgttttggtcagtatttctgcctacactttga 772
>emb|Y18472.1|VVI18472 Vitis vinifera mRNA for zinc finger protein (SINA2p) Length = 1462 Score = 67.9 bits (34), Expect = 3e-08 Identities = 115/142 (80%) Strand = Plus / Plus Query: 299 cacaaggtggacttgcacgaaggctgcacctttaaccaccgctacgtgaagtccaaccct 358 |||||||| ||| ||||||| || || ||||| ||||| || || || || || || ||| Sbjct: 755 cacaaggttgacatgcacgatgggtgtaccttcaaccatcgatatgtcaaatcaaatcct 814 Query: 359 tacgaagtggaaaacgcgacatggatgctcactgtgttcaagtgttttggtcagcacttc 418 | ||||| ||||| || ||||||||||| ||||||||||| |||||||| |||| ||| Sbjct: 815 caggaagttgaaaatgccacatggatgctaactgtgttcaactgttttgggaagcaattc 874 Query: 419 tgcctccactttgaggcgttcc 440 ||| | || |||||||| |||| Sbjct: 875 tgcttgcattttgaggctttcc 896
>ref|XM_479411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1520 Score = 48.1 bits (24), Expect = 0.026 Identities = 60/72 (83%) Strand = Plus / Plus Query: 380 tggatgctcactgtgttcaagtgttttggtcagcacttctgcctccactttgaggcgttc 439 ||||||||||| || |||| ||||| || ||| |||| ||||| ||||||||||| ||| Sbjct: 732 tggatgctcacggttttcagctgtttcggccagtacttttgcctgcactttgaggcattc 791 Query: 440 ctgctgggcatg 451 | | |||||||| Sbjct: 792 cagttgggcatg 803
>dbj|AK107155.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-E07, full insert sequence Length = 1521 Score = 48.1 bits (24), Expect = 0.026 Identities = 60/72 (83%) Strand = Plus / Plus Query: 380 tggatgctcactgtgttcaagtgttttggtcagcacttctgcctccactttgaggcgttc 439 ||||||||||| || |||| ||||| || ||| |||| ||||| ||||||||||| ||| Sbjct: 733 tggatgctcacggttttcagctgtttcggccagtacttttgcctgcactttgaggcattc 792 Query: 440 ctgctgggcatg 451 | | |||||||| Sbjct: 793 cagttgggcatg 804
>dbj|AK058336.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-D03, full insert sequence Length = 1490 Score = 48.1 bits (24), Expect = 0.026 Identities = 102/128 (79%) Strand = Plus / Plus Query: 296 gaccacaaggtggacttgcacgaaggctgcacctttaaccaccgctacgtgaagtccaac 355 ||||||||||| ||| |||| | ||||||||||| ||||| ||||| || ||||| || Sbjct: 715 gaccacaaggttgacatgcataatggctgcaccttcaaccatcgctatgtcaagtcgaat 774 Query: 356 ccttacgaagtggaaaacgcgacatggatgctcactgtgttcaagtgttttggtcagcac 415 ||| | ||||| || || || || |||||||| || || |||| || ||||| ||| || Sbjct: 775 cctcatgaagttgagaatgccacctggatgcttacggttttcagctgctttggccagtac 834 Query: 416 ttctgcct 423 |||||||| Sbjct: 835 ttctgcct 842 Score = 46.1 bits (23), Expect = 0.10 Identities = 59/71 (83%) Strand = Plus / Plus Query: 77 gaactgggaaatatcagatgcttggctctcgagaaggtggccgaatcgatccagcttcca 136 |||||||| ||||| ||||| | ||||||||||||||||| | ||| | | |||||| Sbjct: 496 gaactgggtaatattagatgtcttgctctcgagaaggtggctgcgtcgcttgaacttcca 555 Query: 137 tgcaagtacca 147 ||||||||||| Sbjct: 556 tgcaagtacca 566
>gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0073M15, complete sequence Length = 143071 Score = 46.1 bits (23), Expect = 0.10 Identities = 59/71 (83%) Strand = Plus / Minus Query: 77 gaactgggaaatatcagatgcttggctctcgagaaggtggccgaatcgatccagcttcca 136 |||||||| ||||| ||||| | ||||||||||||||||| | ||| | | |||||| Sbjct: 15058 gaactgggtaatattagatgtcttgctctcgagaaggtggctgcgtcgcttgaacttcca 14999 Query: 137 tgcaagtacca 147 ||||||||||| Sbjct: 14998 tgcaagtacca 14988 Score = 40.1 bits (20), Expect = 6.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 296 gaccacaaggtggacttgcacgaaggctgcacctttaaccaccgctacgtgaagtc 351 ||||||||||| ||| |||| | ||||||||||| ||||| ||||| || ||||| Sbjct: 14839 gaccacaaggttgacatgcataatggctgcaccttcaaccatcgctatgtcaagtc 14784
>emb|BX824188.1|CNS0A6VE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH29ZE04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1332 Score = 46.1 bits (23), Expect = 0.10 Identities = 65/79 (82%) Strand = Plus / Plus Query: 362 gaagtggaaaacgcgacatggatgctcactgtgttcaagtgttttggtcagcacttctgc 421 ||||| |||||||| ||||||||| | ||||| || || || || ||||| ||||||| Sbjct: 792 gaagtcgaaaacgccacatggatgttaactgtctttaactgcttcggtcaatacttctgt 851 Query: 422 ctccactttgaggcgttcc 440 || ||||||||||| |||| Sbjct: 852 cttcactttgaggcattcc 870
>ref|NM_115666.1| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding AT3G58040 mRNA, complete cds Length = 1601 Score = 44.1 bits (22), Expect = 0.41 Identities = 70/86 (81%) Strand = Plus / Plus Query: 323 tgcacctttaaccaccgctacgtgaagtccaacccttacgaagtggaaaacgcgacatgg 382 |||||||| |||||||| || || ||||| || || | || || ||||| || |||||| Sbjct: 809 tgcaccttcaaccaccgttatgtaaagtcaaatccacatgaggtcgaaaatgctacatgg 868 Query: 383 atgctcactgtgttcaagtgttttgg 408 ||||| || |||||||| |||||||| Sbjct: 869 atgcttacggtgttcaactgttttgg 894
>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome Length = 2650701 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 401 tgttttggtcagcacttctgcc 422 |||||||||||||||||||||| Sbjct: 2140417 tgttttggtcagcacttctgcc 2140438
>emb|BX822609.1|CNS0A78G Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB52ZD05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1365 Score = 44.1 bits (22), Expect = 0.41 Identities = 61/74 (82%) Strand = Plus / Plus Query: 362 gaagtggaaaacgcgacatggatgctcactgtgttcaagtgttttggtcagcacttctgc 421 ||||| |||||||| ||||||||| | ||||| || || || || ||||| ||||||| Sbjct: 825 gaagtcgaaaacgccacatggatgtttactgtctttaactgcttcggtcaatacttctgt 884 Query: 422 ctccactttgaggc 435 || ||||||||||| Sbjct: 885 cttcactttgaggc 898
>emb|BX822890.1|CNS0A5VI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB70ZC09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1476 Score = 44.1 bits (22), Expect = 0.41 Identities = 70/86 (81%) Strand = Plus / Plus Query: 323 tgcacctttaaccaccgctacgtgaagtccaacccttacgaagtggaaaacgcgacatgg 382 |||||||| |||||||| || || ||||| || || | || || ||||| || |||||| Sbjct: 722 tgcaccttcaaccaccgttatgtaaagtcaaatccacatgaggtcgaaaatgctacatgg 781 Query: 383 atgctcactgtgttcaagtgttttgg 408 ||||| || |||||||| |||||||| Sbjct: 782 atgcttacggtgttcaactgttttgg 807
>gb|AY087768.1| Arabidopsis thaliana clone 38296 mRNA, complete sequence Length = 1601 Score = 44.1 bits (22), Expect = 0.41 Identities = 70/86 (81%) Strand = Plus / Plus Query: 323 tgcacctttaaccaccgctacgtgaagtccaacccttacgaagtggaaaacgcgacatgg 382 |||||||| |||||||| || || ||||| || || | || || ||||| || |||||| Sbjct: 809 tgcaccttcaaccaccgttatgtaaagtcaaatccacatgaggtcgaaaatgctacatgg 868 Query: 383 atgctcactgtgttcaagtgttttgg 408 ||||| || |||||||| |||||||| Sbjct: 869 atgcttacggtgttcaactgttttgg 894
>gb|BT013026.1| Lycopersicon esculentum clone 114273R, mRNA sequence Length = 1252 Score = 42.1 bits (21), Expect = 1.6 Identities = 54/65 (83%) Strand = Plus / Plus Query: 362 gaagtggaaaacgcgacatggatgctcactgtgttcaagtgttttggtcagcacttctgc 421 ||||||||||| || || |||||| | || || ||||| |||||||||||| |||| || Sbjct: 689 gaagtggaaaatgctacgtggatgttaacagttttcaattgttttggtcagtacttttgt 748 Query: 422 ctcca 426 ||||| Sbjct: 749 ctcca 753
>gb|AC125077.4| Mus musculus BAC clone RP23-473K6 from chromosome 6, complete sequence Length = 184783 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 380 tggatgctcactgtgttcaag 400 ||||||||||||||||||||| Sbjct: 99996 tggatgctcactgtgttcaag 99976
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 ggcgttcctgctgggcatgtc 453 ||||||||||||||||||||| Sbjct: 1542062 ggcgttcctgctgggcatgtc 1542082
>ref|NM_129762.1| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding AT2G41980 mRNA, complete cds Length = 918 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 92 agatgcttggctctcgagaaggtggccgaatc 123 |||||||||||||| |||||||| || ||||| Sbjct: 298 agatgcttggctcttgagaaggttgcggaatc 329
>ref|NM_118926.2| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding AT4G27880 mRNA, complete cds Length = 1509 Score = 40.1 bits (20), Expect = 6.4 Identities = 89/112 (79%) Strand = Plus / Plus Query: 329 tttaaccaccgctacgtgaagtccaacccttacgaagtggaaaacgcgacatggatgctc 388 |||||||||||||| || || ||||| || ||||| || ||||| || |||||||| Sbjct: 956 tttaaccaccgctatgtcaaatccaatccgcgtgaagtagagaacgctacttggatgcta 1015 Query: 389 actgtgttcaagtgttttggtcagcacttctgcctccactttgaggcgttcc 440 || || ||| | || ||||| ||| ||||||||||||| || || ||||||| Sbjct: 1016 accgtattccattgctttgggcagtacttctgcctccatttcgaagcgttcc 1067
>gb|DQ013805.1| Phyllostachys praecox SINA mRNA, partial cds Length = 1055 Score = 40.1 bits (20), Expect = 6.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 401 tgttttggtcagcacttctgcctccactttgaggcgttcc 440 |||||||| ||| |||||||| | ||||||||||| |||| Sbjct: 468 tgttttgggcagtacttctgcttgcactttgaggccttcc 507
>gb|U90439.3| Arabidopsis thaliana chromosome 2 BAC T6D20 genomic sequence, complete sequence Length = 95824 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 92 agatgcttggctctcgagaaggtggccgaatc 123 |||||||||||||| |||||||| || ||||| Sbjct: 39026 agatgcttggctcttgagaaggttgcggaatc 39057
>emb|BX828435.1|CNS0A341 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH8ZB11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1468 Score = 40.1 bits (20), Expect = 6.4 Identities = 89/112 (79%) Strand = Plus / Plus Query: 329 tttaaccaccgctacgtgaagtccaacccttacgaagtggaaaacgcgacatggatgctc 388 |||||||||||||| || || ||||| || ||||| || ||||| || |||||||| Sbjct: 934 tttaaccaccgctatgtcaaatccaatccgcgtgaagtagagaacgctacttggatgcta 993 Query: 389 actgtgttcaagtgttttggtcagcacttctgcctccactttgaggcgttcc 440 || || ||| | || ||||| ||| ||||||||||||| || || ||||||| Sbjct: 994 accgtattccattgctttgggcagtacttctgcctccatttcgaagcgttcc 1045
>emb|BX828249.1|CNS0A2ZA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH67ZE04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1472 Score = 40.1 bits (20), Expect = 6.4 Identities = 89/112 (79%) Strand = Plus / Plus Query: 329 tttaaccaccgctacgtgaagtccaacccttacgaagtggaaaacgcgacatggatgctc 388 |||||||||||||| || || ||||| || ||||| || ||||| || |||||||| Sbjct: 946 tttaaccaccgctatgtcaaatccaatccgcgtgaagtagagaacgctacttggatgcta 1005 Query: 389 actgtgttcaagtgttttggtcagcacttctgcctccactttgaggcgttcc 440 || || ||| | || ||||| ||| ||||||||||||| || || ||||||| Sbjct: 1006 accgtattccattgctttgggcagtacttctgcctccatttcgaagcgttcc 1057
>emb|BX826575.1|CNS0A34X Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB42ZC02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1417 Score = 40.1 bits (20), Expect = 6.4 Identities = 89/112 (79%) Strand = Plus / Plus Query: 329 tttaaccaccgctacgtgaagtccaacccttacgaagtggaaaacgcgacatggatgctc 388 |||||||||||||| || || ||||| || ||||| || ||||| || |||||||| Sbjct: 900 tttaaccaccgctatgtcaaatccaatccgcgtgaagtagagaacgctacttggatgcta 959 Query: 389 actgtgttcaagtgttttggtcagcacttctgcctccactttgaggcgttcc 440 || || ||| | || ||||| ||| ||||||||||||| || || ||||||| Sbjct: 960 accgtattccattgctttgggcagtacttctgcctccatttcgaagcgttcc 1011
>emb|BX826742.1|CNS0A2BK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB5ZB03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1481 Score = 40.1 bits (20), Expect = 6.4 Identities = 89/112 (79%) Strand = Plus / Plus Query: 329 tttaaccaccgctacgtgaagtccaacccttacgaagtggaaaacgcgacatggatgctc 388 |||||||||||||| || || ||||| || ||||| || ||||| || |||||||| Sbjct: 956 tttaaccaccgctatgtcaaatccaatccgcgtgaagtagagaacgctacttggatgcta 1015 Query: 389 actgtgttcaagtgttttggtcagcacttctgcctccactttgaggcgttcc 440 || || ||| | || ||||| ||| ||||||||||||| || || ||||||| Sbjct: 1016 accgtattccattgctttgggcagtacttctgcctccatttcgaagcgttcc 1067
>gb|AY595415.1| Glycine max chalcone isomerase 2 mRNA, complete cds Length = 902 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 tccaaatggccacacaattt 26 |||||||||||||||||||| Sbjct: 363 tccaaatggccacacaattt 344
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 gcgttcctgctgggcatgtc 453 |||||||||||||||||||| Sbjct: 7825152 gcgttcctgctgggcatgtc 7825133
>gb|AC145956.4| Gallus gallus BAC clone CH261-14N1 from chromosome unknown, complete sequence Length = 243969 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 47 gtagacaaccattgccccacttgc 70 |||||||||||||| ||||||||| Sbjct: 51086 gtagacaaccattgacccacttgc 51063
>emb|AL929344.8| Zebrafish DNA sequence from clone DKEYP-115D2, complete sequence Length = 190898 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 391 tgtgttcaagtgttttggtcagcacttc 418 ||||| ||||||||||||| |||||||| Sbjct: 185635 tgtgtccaagtgttttggtaagcacttc 185662 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,448,372 Number of Sequences: 3902068 Number of extensions: 3448372 Number of successful extensions: 55548 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 55431 Number of HSP's gapped (non-prelim): 113 length of query: 475 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 453 effective length of database: 17,147,199,772 effective search space: 7767681496716 effective search space used: 7767681496716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)