ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast77f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469860.1| Oryza sativa (japonica cultivar-group), mRNA 58 1e-05
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 1e-05
3gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genom... 58 1e-05
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
5dbj|AK101534.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 1e-05
6dbj|AK064205.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 1e-05
7ref|XM_469859.1| Oryza sativa (japonica cultivar-group), mRNA 56 4e-05
8gb|AC132881.10| Mus musculus chromosome 14, clone RP24-246K16, c... 44 0.15
9emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 44 0.15
10gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genom... 42 0.58
11gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complet... 40 2.3
12gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 2.3
13gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 2.3
14gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 2.3
15emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome... 40 2.3
16emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 2.3
17gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 2.3
18ref|XM_464816.1| Oryza sativa (japonica cultivar-group), mRNA 38 9.1
19ref|XM_476685.1| Oryza sativa (japonica cultivar-group), mRNA 38 9.1
20gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.1
21gb|CP000081.1| Leishmania major chromosome 35, complete sequence 38 9.1
22gb|AC154566.2| Mus musculus BAC clone RP23-407A17 from chromosom... 38 9.1
23gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 38 9.1
24gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome... 38 9.1
25ref|XM_421168.1| PREDICTED: Gallus gallus similar to chromosome ... 38 9.1
26gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.1
27gb|AC125780.2| Oryza sativa (japonica culitvar-group) chromosome... 38 9.1
28ref|XM_744271.1| Aspergillus fumigatus Af293 hypothetical protei... 38 9.1
29gb|AC132367.3| Mus musculus BAC clone RP23-465K21 from chromosom... 38 9.1
30gb|AC121327.3| Oryza sativa (japonica cultivar-group) chromosome... 38 9.1
31emb|AL353150.25| Human DNA sequence from clone RP11-82L18 on chr... 38 9.1
32gb|U87437.1|PUU87437 Pseudaphritis urvillii 28S ribosomal RNA ge... 38 9.1
33emb|AL672160.11| Mouse DNA sequence from clone RP23-144K18 on ch... 38 9.1
34gb|AE012403.1| Xanthomonas campestris pv. campestris str. ATCC 3... 38 9.1
35gb|AC152170.4| Ornithorhynchus anatinus BAC clone OABb-47A1 from... 38 9.1
36gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 38 9.1
37dbj|AK045565.1| Mus musculus adult male corpora quadrigemina cDN... 38 9.1
38gb|AF333927.1|AF333927 Mus musculus polycystin 1 (Pkd1) gene, ex... 38 9.1
39dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
40dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
41dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
42dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
43dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
44dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
45gb|AC023732.5| Drosophila melanogaster X BAC RP98-42M11 (Roswell... 38 9.1
46emb|AJ495765.2|POL495765 Polytomella sp. 'Pringsheim 198.80' pa... 38 9.1
47dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
48dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
49dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
50dbj|AK060116.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 9.1
51emb|Z72508.1|CEF28H7 Caenorhabditis elegans Cosmid F28H7, comple... 38 9.1
52gb|AE003449.2| Drosophila melanogaster chromosome X, section 33 ... 38 9.1
53gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 9.1
54gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 9.1
55emb|AL772414.3|CNS08C9S Oryza sativa chromosome 12, . BAC OSJNBa... 38 9.1
56emb|AL731753.2|CNS08C82 Oryza sativa chromosome 12, . BAC OJ1112... 38 9.1
57dbj|AB018557.1| Streptomyces griseus cyaA gene for adenylate cyc... 38 9.1 
>ref|XM_469860.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2215

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                       
Query: 56  aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 115
           |||||||||| || |||| |||||| | |  ||||| || ||||||||||| ||||||||
Sbjct: 453 aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 394

                        
Query: 116 ggcggaggccggt 128
           ||||||| |||||
Sbjct: 393 ggcggagtccggt 381
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                            
Query: 56       aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 115
                |||||||||| || |||| |||||| | |  ||||| || ||||||||||| ||||||||
Sbjct: 31176109 aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 31176050

                             
Query: 116      ggcggaggccggt 128
                ||||||| |||||
Sbjct: 31176049 ggcggagtccggt 31176037



 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 59       ggcggcgccgccggacagcaa 79
                |||||||||||||||||||||
Sbjct: 22486970 ggcggcgccgccggacagcaa 22486950
to top
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
             sequence
          Length = 128017

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                         
Query: 56    aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 115
             |||||||||| || |||| |||||| | |  ||||| || ||||||||||| ||||||||
Sbjct: 96750 aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 96691

                          
Query: 116   ggcggaggccggt 128
             ||||||| |||||
Sbjct: 96690 ggcggagtccggt 96678
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                            
Query: 56       aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 115
                |||||||||| || |||| |||||| | |  ||||| || ||||||||||| ||||||||
Sbjct: 31266632 aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 31266573

                             
Query: 116      ggcggaggccggt 128
                ||||||| |||||
Sbjct: 31266572 ggcggagtccggt 31266560



 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 59       ggcggcgccgccggacagcaa 79
                |||||||||||||||||||||
Sbjct: 22479999 ggcggcgccgccggacagcaa 22479979
to top
>dbj|AK101534.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C14, full
           insert sequence
          Length = 1492

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                       
Query: 56  aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 115
           |||||||||| || |||| |||||| | |  ||||| || ||||||||||| ||||||||
Sbjct: 32  aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 91

                        
Query: 116 ggcggaggccggt 128
           ||||||| |||||
Sbjct: 92  ggcggagtccggt 104
to top
>dbj|AK064205.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-E04, full
           insert sequence
          Length = 1473

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                       
Query: 56  aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 115
           |||||||||| || |||| |||||| | |  ||||| || ||||||||||| ||||||||
Sbjct: 22  aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 81

                        
Query: 116 ggcggaggccggt 128
           ||||||| |||||
Sbjct: 82  ggcggagtccggt 94
to top
>ref|XM_469859.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1008

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 57  atggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggcg 116
           ||||||||| || |||| |||||| | |  ||||| || ||||||||||| |||||||||
Sbjct: 1   atggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggcg 60

                       
Query: 117 gcggaggccggt 128
           |||||| |||||
Sbjct: 61  gcggagtccggt 72
to top
>gb|AC132881.10| Mus musculus chromosome 14, clone RP24-246K16, complete sequence
          Length = 181352

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 4     aaaactgagcaaaacctcaaag 25
             ||||||||||||||||||||||
Sbjct: 76765 aaaactgagcaaaacctcaaag 76786
to top
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 61    cggcgccgccggacagcaagtc 82
             ||||||||||||||||||||||
Sbjct: 88810 cggcgccgccggacagcaagtc 88789
to top
>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete
             sequence
          Length = 145590

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    ggcggcgccgccggacagcaa 79
             |||||||||||||||||||||
Sbjct: 82217 ggcggcgccgccggacagcaa 82197
to top
>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 124     ccggtaacgacgatgctatc 143
               ||||||||||||||||||||
Sbjct: 1599549 ccggtaacgacgatgctatc 1599530
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 160     ctggcgctgacgccacctac 179
               ||||||||||||||||||||
Sbjct: 2100819 ctggcgctgacgccacctac 2100838
to top
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 53      ggcaatggcggcgccgccgg 72
               ||||||||||||||||||||
Sbjct: 2085376 ggcaatggcggcgccgccgg 2085357
to top
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 59      ggcggcgccgccggacagca 78
               ||||||||||||||||||||
Sbjct: 3415790 ggcggcgccgccggacagca 3415809
to top
>emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome; segment 7/13
          Length = 346186

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 53   ggcaatggcggcgccgccgg 72
            ||||||||||||||||||||
Sbjct: 9447 ggcaatggcggcgccgccgg 9428
to top
>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 7/14
          Length = 291050

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     ggcaatggcggcgccgccgg 72
              ||||||||||||||||||||
Sbjct: 164502 ggcaatggcggcgccgccgg 164483
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     tggcggcgccgccggacagc 77
              ||||||||||||||||||||
Sbjct: 101987 tggcggcgccgccggacagc 101968
to top
>ref|XM_464816.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 636

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 53  ggcaatggcggcgccgccg 71
           |||||||||||||||||||
Sbjct: 620 ggcaatggcggcgccgccg 602
to top
>ref|XM_476685.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1125

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 53 ggcaatggcggcgccgccg 71
          |||||||||||||||||||
Sbjct: 30 ggcaatggcggcgccgccg 48
to top
>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0019D02, complete sequence
          Length = 154692

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 53    ggcaatggcggcgccgccg 71
             |||||||||||||||||||
Sbjct: 57325 ggcaatggcggcgccgccg 57343
to top
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 23     aagcgaagacgagagaagg 41
              |||||||||||||||||||
Sbjct: 104158 aagcgaagacgagagaagg 104176
to top
>gb|AC154566.2| Mus musculus BAC clone RP23-407A17 from chromosome 17, complete sequence
          Length = 204306

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 148    agcttatttcctctggcgctgac 170
              |||||||||||||||| ||||||
Sbjct: 168451 agcttatttcctctggtgctgac 168429
to top
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     acctagggcaatggcggcg 65
              |||||||||||||||||||
Sbjct: 780269 acctagggcaatggcggcg 780251
to top
>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01,
            complete sequence
          Length = 146303

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 111  gcggcggcggaggccggta 129
            |||||||||||||||||||
Sbjct: 4825 gcggcggcggaggccggta 4843
to top
>ref|XM_421168.1| PREDICTED: Gallus gallus similar to chromosome 14 open reading
           frame 168 (LOC423246), mRNA
          Length = 891

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 104 cctgtgcgcggcggcggag 122
           |||||||||||||||||||
Sbjct: 181 cctgtgcgcggcggcggag 199
to top
>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21,
              complete sequence
          Length = 151267

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 111    gcggcggcggaggccggta 129
              |||||||||||||||||||
Sbjct: 122647 gcggcggcggaggccggta 122665
to top
>gb|AC125780.2| Oryza sativa (japonica culitvar-group) chromosome 11 BAC clone
             OSJNBa0030I15, complete sequence
          Length = 148498

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 51    agggcaatggcggcgccgc 69
             |||||||||||||||||||
Sbjct: 22222 agggcaatggcggcgccgc 22204
to top
>ref|XM_744271.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g02290) partial
            mRNA
          Length = 2583

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 108  tgcgcggcggcggaggccg 126
            |||||||||||||||||||
Sbjct: 1498 tgcgcggcggcggaggccg 1480
to top
>gb|AC132367.3| Mus musculus BAC clone RP23-465K21 from chromosome 17, complete
             sequence
          Length = 192971

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 148   agcttatttcctctggcgctgac 170
             |||||||||||||||| ||||||
Sbjct: 49815 agcttatttcctctggtgctgac 49793
to top
>gb|AC121327.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0016O23, complete sequence
          Length = 149400

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 51     agggcaatggcggcgccgc 69
              |||||||||||||||||||
Sbjct: 143170 agggcaatggcggcgccgc 143152
to top
>emb|AL353150.25| Human DNA sequence from clone RP11-82L18 on chromosome 9 Contains the
            3' end of a novel gene (SHC3) and a novel gene, complete
            sequence
          Length = 113051

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 90   tccccagaggagctcctgt 108
            |||||||||||||||||||
Sbjct: 7180 tccccagaggagctcctgt 7198
to top
>gb|U87437.1|PUU87437 Pseudaphritis urvillii 28S ribosomal RNA gene, D8 domain
          Length = 350

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 104 cctgtgcgcggcggcggag 122
           |||||||||||||||||||
Sbjct: 102 cctgtgcgcggcggcggag 84
to top
>emb|AL672160.11| Mouse DNA sequence from clone RP23-144K18 on chromosome 4, complete
              sequence
          Length = 146373

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 109    gcgcggcggcggaggccgg 127
              |||||||||||||||||||
Sbjct: 141147 gcgcggcggcggaggccgg 141129
to top
>gb|AE012403.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 311
            of 460 of the complete genome
          Length = 10787

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 52   gggcaatggcggcgccgccggac 74
            |||||||||||| ||||||||||
Sbjct: 2283 gggcaatggcggtgccgccggac 2261
to top
>gb|AC152170.4| Ornithorhynchus anatinus BAC clone OABb-47A1 from chromosome unknown,
             complete sequence
          Length = 151943

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 109   gcgcggcggcggaggccgg 127
             |||||||||||||||||||
Sbjct: 87453 gcgcggcggcggaggccgg 87435
to top
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 52      gggcaatggcggcgccgccggac 74
               |||||||||||| ||||||||||
Sbjct: 1483049 gggcaatggcggtgccgccggac 1483071
to top
>dbj|AK045565.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230210O21
           product:unclassifiable, full insert sequence
          Length = 1743

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 109 gcgcggcggcggaggccgg 127
           |||||||||||||||||||
Sbjct: 355 gcgcggcggcggaggccgg 337
to top
>gb|AF333927.1|AF333927 Mus musculus polycystin 1 (Pkd1) gene, exons 39 through 46 and
            partial cds; and tuberous sclerosis 2 (Tcs2) gene,
            partial cds
          Length = 5127

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 148  agcttatttcctctggcgctgac 170
            |||||||||||||||| ||||||
Sbjct: 2339 agcttatttcctctggtgctgac 2361
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 111      gcggcggcggaggccggta 129
                |||||||||||||||||||
Sbjct: 14503433 gcggcggcggaggccggta 14503415
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 51       agggcaatggcggcgccgc 69
                |||||||||||||||||||
Sbjct: 23954355 agggcaatggcggcgccgc 23954337
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 53       ggcaatggcggcgccgccg 71
                |||||||||||||||||||
Sbjct: 19012061 ggcaatggcggcgccgccg 19012079
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 53      ggcaatggcggcgccgccg 71
               |||||||||||||||||||
Sbjct: 3162534 ggcaatggcggcgccgccg 3162516
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 111      gcggcggcggaggccggta 129
                |||||||||||||||||||
Sbjct: 19200749 gcggcggcggaggccggta 19200767
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 53      ggcaatggcggcgccgccg 71
               |||||||||||||||||||
Sbjct: 8366468 ggcaatggcggcgccgccg 8366486
to top
>gb|AC023732.5| Drosophila melanogaster X BAC RP98-42M11 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 177820

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      cccaaaactgagcaaaacc 19
              |||||||||||||||||||
Sbjct: 108991 cccaaaactgagcaaaacc 108973
to top
>emb|AJ495765.2|POL495765 Polytomella sp. 'Pringsheim 198.80'  partial mRNA for mitochondrial
            targeted aldehyde-alcohol dehydrogenase (adhE gene)
          Length = 2714

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 58   tggcggcgccgccggacagcaag 80
            ||||||||||||||||| |||||
Sbjct: 1546 tggcggcgccgccggactgcaag 1524
to top
>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0455F03
          Length = 158201

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 53    ggcaatggcggcgccgccg 71
             |||||||||||||||||||
Sbjct: 77524 ggcaatggcggcgccgccg 77506
to top
>dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0011N12
          Length = 158586

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 53    ggcaatggcggcgccgccg 71
             |||||||||||||||||||
Sbjct: 19318 ggcaatggcggcgccgccg 19336
to top
>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0090H18
          Length = 174842

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 53     ggcaatggcggcgccgccg 71
              |||||||||||||||||||
Sbjct: 143139 ggcaatggcggcgccgccg 143157
to top
>dbj|AK060116.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E08, full
           insert sequence
          Length = 1111

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 53  ggcaatggcggcgccgccg 71
           |||||||||||||||||||
Sbjct: 821 ggcaatggcggcgccgccg 803
to top
>emb|Z72508.1|CEF28H7 Caenorhabditis elegans Cosmid F28H7, complete sequence
          Length = 27400

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 4     aaaactgagcaaaacctcaaagc 26
             ||||||||||||||| |||||||
Sbjct: 15331 aaaactgagcaaaacttcaaagc 15353
to top
>gb|AE003449.2| Drosophila melanogaster chromosome X, section 33 of 74 of the complete
             sequence
          Length = 307201

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     cccaaaactgagcaaaacc 19
             |||||||||||||||||||
Sbjct: 27268 cccaaaactgagcaaaacc 27250
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 51       agggcaatggcggcgccgc 69
                |||||||||||||||||||
Sbjct: 24266024 agggcaatggcggcgccgc 24266006
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 111      gcggcggcggaggccggta 129
                |||||||||||||||||||
Sbjct: 14457717 gcggcggcggaggccggta 14457699
to top
>emb|AL772414.3|CNS08C9S Oryza sativa chromosome 12, . BAC OSJNBa0040E18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 158261

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 111    gcggcggcggaggccggta 129
              |||||||||||||||||||
Sbjct: 157860 gcggcggcggaggccggta 157878
to top
>emb|AL731753.2|CNS08C82 Oryza sativa chromosome 12, . BAC OJ1112_B07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 118101

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 111   gcggcggcggaggccggta 129
             |||||||||||||||||||
Sbjct: 13859 gcggcggcggaggccggta 13877
to top
>dbj|AB018557.1| Streptomyces griseus cyaA gene for adenylate cyclase, complete cds
          Length = 2955

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 109  gcgcggcggcggaggccgg 127
            |||||||||||||||||||
Sbjct: 2884 gcgcggcggcggaggccgg 2866


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,366,521
Number of Sequences: 3902068
Number of extensions: 1366521
Number of successful extensions: 118977
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116439
Number of HSP's gapped (non-prelim): 2538
length of query: 184
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 162
effective length of database: 17,147,199,772
effective search space: 2777846363064
effective search space used: 2777846363064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top