ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast77f02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY052155.1| Triticum aestivum porphobilinogen deaminase mRNA, partial cds Length = 601 Score = 375 bits (189), Expect = e-101 Identities = 207/213 (97%) Strand = Plus / Plus Query: 158 cggagatggcgacgctgagatgcaccaaccacaccctcctcggctcgccgacctgcctcg 217 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 2 cggagatggcgacgctgagatgcaccaaccacacactcctcggctcgccgacctgcctcg 61 Query: 218 cgcgcccgcgccgggcggtggtgcgcgccgccgtcgccgtccaggccgaggcgcagccca 277 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 cgcgcccgcgccgggccgtggtgcgcgccgccgtcgccgtccaggccgaggcgcagccca 121 Query: 278 aggtctccctcatccggattggcacgcgcgggagtcctcttgctcttgcacaagctcatg 337 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct: 122 aggtctccctcatccggattggcacgcgcgggagtcctcttgctcttgcacaagcccgtc 181 Query: 338 aaacccgtgacaaactgaaagctgcacacacgg 370 ||||||||||| ||||||||||||||||||||| Sbjct: 182 aaacccgtgacgaactgaaagctgcacacacgg 214
>ref|XM_464262.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1416 Score = 220 bits (111), Expect = 2e-54 Identities = 170/189 (89%), Gaps = 8/189 (4%) Strand = Plus / Plus Query: 185 accacaccctcctcggctcgccgacctgcctcgcgcgcccgcgccgggcggtg------- 237 ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||| Sbjct: 86 accactccctcctcggctcgcccacctgcctcgcgcgcccgcggcgg-cggtgctgcccc 144 Query: 238 gtgcgcgccgccgtcgccgtccaggccgaggcgcagcccaaggtctccctcatccggatt 297 |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct: 145 gtgcgcgccgccgtcgccgtccaggccgaggcgcaggccaaggtctcgctcatccggatt 204 Query: 298 ggcacgcgcgggagtcctcttgctcttgcacaagctcatgaaacccgtgacaaactgaaa 357 ||||| ||||||||||||||||| || |||||||||||||||||||| ||||| ||||| Sbjct: 205 ggcacccgcgggagtcctcttgcactggcacaagctcatgaaacccgagacaagctgaag 264 Query: 358 gctgcacac 366 ||||||||| Sbjct: 265 gctgcacac 273
>dbj|AK060914.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G03, full insert sequence Length = 1416 Score = 212 bits (107), Expect = 6e-52 Identities = 169/189 (89%), Gaps = 8/189 (4%) Strand = Plus / Plus Query: 185 accacaccctcctcggctcgccgacctgcctcgcgcgcccgcgccgggcggtg------- 237 ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||| Sbjct: 86 accactccctcctcggctcgcccacctgcctcgcgcgcccgcggcgg-cggtgctgcccc 144 Query: 238 gtgcgcgccgccgtcgccgtccaggccgaggcgcagcccaaggtctccctcatccggatt 297 |||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||| Sbjct: 145 gtgcgcgccgccgtcgccgtccaggccggggcgcaggccaaggtctcgctcatccggatt 204 Query: 298 ggcacgcgcgggagtcctcttgctcttgcacaagctcatgaaacccgtgacaaactgaaa 357 ||||| ||||||||||||||||| || |||||||||||||||||||| ||||| ||||| Sbjct: 205 ggcacccgcgggagtcctcttgcactggcacaagctcatgaaacccgagacaagctgaag 264 Query: 358 gctgcacac 366 ||||||||| Sbjct: 265 gctgcacac 273
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 151 bits (76), Expect = 2e-33 Identities = 120/134 (89%), Gaps = 8/134 (5%) Strand = Plus / Plus Query: 185 accacaccctcctcggctcgccgacctgcctcgcgcgcccgcgccgggcggtg------- 237 ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||| Sbjct: 3715443 accactccctcctcggctcgcccacctgcctcgcgcgcccgcggcgg-cggtgctgcccc 3715501 Query: 238 gtgcgcgccgccgtcgccgtccaggccgaggcgcagcccaaggtctccctcatccggatt 297 |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct: 3715502 gtgcgcgccgccgtcgccgtccaggccgaggcgcaggccaaggtctcgctcatccggatt 3715561 Query: 298 ggcacgcgcgggag 311 ||||| |||||||| Sbjct: 3715562 ggcacccgcgggag 3715575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 310 agtcctcttgctcttgcacaagctcatgaaacccgtgacaaactgaaagctgcacac 366 ||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||||| Sbjct: 3716301 agtcctcttgcactggcacaagctcatgaaacccgagacaagctgaaggctgcacac 3716357 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 gcgcgccgccgtcgccgtcc 259 |||||||||||||||||||| Sbjct: 31058728 gcgcgccgccgtcgccgtcc 31058747
>dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0669G09 Length = 140067 Score = 151 bits (76), Expect = 2e-33 Identities = 120/134 (89%), Gaps = 8/134 (5%) Strand = Plus / Plus Query: 185 accacaccctcctcggctcgccgacctgcctcgcgcgcccgcgccgggcggtg------- 237 ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||| Sbjct: 55760 accactccctcctcggctcgcccacctgcctcgcgcgcccgcggcgg-cggtgctgcccc 55818 Query: 238 gtgcgcgccgccgtcgccgtccaggccgaggcgcagcccaaggtctccctcatccggatt 297 |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct: 55819 gtgcgcgccgccgtcgccgtccaggccgaggcgcaggccaaggtctcgctcatccggatt 55878 Query: 298 ggcacgcgcgggag 311 ||||| |||||||| Sbjct: 55879 ggcacccgcgggag 55892 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 310 agtcctcttgctcttgcacaagctcatgaaacccgtgacaaactgaaagctgcacac 366 ||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||||| Sbjct: 56618 agtcctcttgcactggcacaagctcatgaaacccgagacaagctgaaggctgcacac 56674
>gb|AY052154.1| Triticum aestivum porphobilinogen deaminase mRNA, partial cds Length = 1220 Score = 129 bits (65), Expect = 7e-27 Identities = 77/81 (95%) Strand = Plus / Plus Query: 290 tccggattggcacgcgcgggagtcctcttgctcttgcacaagctcatgaaacccgtgaca 349 ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| Sbjct: 1 tccggattggcacgcgcgggagtcctcttgctcttgcacaagcccgtcaaacccgtgacg 60 Query: 350 aactgaaagctgcacacacgg 370 ||||||||||||||||||||| Sbjct: 61 aactgaaagctgcacacacgg 81
>gb|AY105442.1| Zea mays PCO070685 mRNA sequence Length = 1591 Score = 129 bits (65), Expect = 7e-27 Identities = 113/129 (87%) Strand = Plus / Plus Query: 238 gtgcgcgccgccgtcgccgtccaggccgaggcgcagcccaaggtctccctcatccggatt 297 |||||||| ||||||||||| |||||| || ||| |||||||||| |||||||||||| Sbjct: 203 gtgcgcgctgccgtcgccgtggaggccggcgctcaggccaaggtctcactcatccggatt 262 Query: 298 ggcacgcgcgggagtcctcttgctcttgcacaagctcatgaaacccgtgacaaactgaaa 357 || ||||| ||||||||||| |||||||||||||| |||||||| || || ||||||||| Sbjct: 263 gggacgcgtgggagtcctctggctcttgcacaagcccatgaaactcgggaaaaactgaaa 322 Query: 358 gctgcacac 366 || |||||| Sbjct: 323 gccgcacac 331 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 185 accacaccctcctcggctcgccgacctgcctcgcgcgcccgcg 227 ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 141 accactccctcctcggctcgccgacctgcctcgcgcgcccgcg 183
>ref|XM_464263.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1466 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 310 agtcctcttgctcttgcacaagctcatgaaacccgtgacaaactgaaagctgcacac 366 ||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||||| Sbjct: 250 agtcctcttgcactggcacaagctcatgaaacccgagacaagctgaaggctgcacac 306
>dbj|AK102265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088M20, full insert sequence Length = 1466 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 310 agtcctcttgctcttgcacaagctcatgaaacccgtgacaaactgaaagctgcacac 366 ||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||||| Sbjct: 250 agtcctcttgcactggcacaagctcatgaaacccgagacaagctgaaggctgcacac 306
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 46.1 bits (23), Expect = 0.080 Identities = 29/31 (93%) Strand = Plus / Plus Query: 227 gccgggcggtggtgcgcgccgccgtcgccgt 257 ||||||||| ||||||| ||||||||||||| Sbjct: 1728322 gccgggcggcggtgcgctccgccgtcgccgt 1728352
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Plus Query: 217 gcgcgcccgcgccgggcggtggtgcgcgccgccg 250 |||||| ||||| |||||||||||||||||||| Sbjct: 4403965 gcgcgcgcgcgctcggcggtggtgcgcgccgccg 4403998
>ref|XM_474243.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1293 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 247 gccgtcgccgtccaggccgaggcgc 271 |||||||||||||| |||||||||| Sbjct: 246 gccgtcgccgtccacgccgaggcgc 222
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 240 gcgcgccgccgtcgccgtccaggcc 264 |||||||||||||||||||| |||| Sbjct: 79195 gcgcgccgccgtcgccgtcctggcc 79171
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence Length = 146168 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 247 gccgtcgccgtccaggccgaggcgc 271 |||||||||||||| |||||||||| Sbjct: 10500 gccgtcgccgtccacgccgaggcgc 10476
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 247 gccgtcgccgtccaggccgaggcgc 271 |||||||||||||| |||||||||| Sbjct: 33959603 gccgtcgccgtccacgccgaggcgc 33959579
>gb|AE005090.1| Halobacterium sp. NRC-1 section 121 of 170 of the complete genome Length = 13542 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 gtgcgcgccgccgtcgccgtc 258 ||||||||||||||||||||| Sbjct: 7253 gtgcgcgccgccgtcgccgtc 7273
>dbj|AK109743.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E07, full insert sequence Length = 1640 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 247 gccgtcgccgtccaggccgaggcgc 271 |||||||||||||| |||||||||| Sbjct: 352 gccgtcgccgtccacgccgaggcgc 328
>gb|AC135242.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0070D14, complete sequence Length = 174780 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tcctctcctccccctcatcc 23 |||||||||||||||||||| Sbjct: 125236 tcctctcctccccctcatcc 125217
>gb|AC130724.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0409G01, complete sequence Length = 143263 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 ggccgccggagatggcgacg 171 |||||||||||||||||||| Sbjct: 86384 ggccgccggagatggcgacg 86365
>ref|XM_845073.1| PREDICTED: Canis familiaris similar to keratin, hair, basic, 3 (LOC486529), mRNA Length = 1737 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 caggccgaggcgcagcccaaggtc 282 |||||||||||||||| ||||||| Sbjct: 341 caggccgaggcgcagctcaaggtc 318
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 aaacccgtgacaaactgaaa 357 |||||||||||||||||||| Sbjct: 1334476 aaacccgtgacaaactgaaa 1334457
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ggtgcgcgccgccgtcgccg 256 |||||||||||||||||||| Sbjct: 238659 ggtgcgcgccgccgtcgccg 238640
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 cctcctcggctcgccgacct 211 |||||||||||||||||||| Sbjct: 1301583 cctcctcggctcgccgacct 1301602
>gb|DQ351275.1| Streptomyces sp. NRRL 30748 meridamycin biosynthetic gene cluster and flanking regions Length = 116831 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 gtcgccgtccaggccgaggcgcag 273 |||| ||||||||||||||||||| Sbjct: 13290 gtcgtcgtccaggccgaggcgcag 13267
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ggtgcgcgccgccgtcgccg 256 |||||||||||||||||||| Sbjct: 3560495 ggtgcgcgccgccgtcgccg 3560514
>gb|AC113173.2| Homo sapiens chromosome 1 clone RP4-724N10, complete sequence Length = 149950 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 atcctctcctccccctcatc 22 |||||||||||||||||||| Sbjct: 86541 atcctctcctccccctcatc 86560
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 gcctcgcgcgcccgcgccgg 231 |||||||||||||||||||| Sbjct: 1938891 gcctcgcgcgcccgcgccgg 1938872
>gb|AC005912.1| Homo sapiens 12 BAC RPCI11-543P15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165516 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 tcctctcctccccctcatccatcc 27 ||||||||||||| |||||||||| Sbjct: 151883 tcctctcctccccgtcatccatcc 151906
>gb|AC067982.6| Homo sapiens chromosome 8, clone RP11-125E23, complete sequence Length = 147875 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 tcttgctcttgcacaagctc 334 |||||||||||||||||||| Sbjct: 131504 tcttgctcttgcacaagctc 131523
>emb|BX323601.6| Zebrafish DNA sequence from clone RP71-14P11, complete sequence Length = 207067 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ggcggtggtgcgcgccgccg 250 |||||||||||||||||||| Sbjct: 113395 ggcggtggtgcgcgccgccg 113376
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tcctctcctccccctcatcc 23 |||||||||||||||||||| Sbjct: 15132272 tcctctcctccccctcatcc 15132253
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 ggccgccggagatggcgacg 171 |||||||||||||||||||| Sbjct: 13715325 ggccgccggagatggcgacg 13715306
>gb|AC025828.3|AC025828 Homo sapiens, clone RP11-13I24, complete sequence Length = 152843 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 tcttgctcttgcacaagctc 334 |||||||||||||||||||| Sbjct: 32500 tcttgctcttgcacaagctc 32519
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 ggtggtgcgcgccgccgtcg 253 |||||||||||||||||||| Sbjct: 5937382 ggtggtgcgcgccgccgtcg 5937363 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ggtgcgcgccgccgtcgccg 256 |||||||||||||||||||| Sbjct: 4818835 ggtgcgcgccgccgtcgccg 4818816
>gb|AC099406.3| Papio anubis clone RP41-290L4, complete sequence Length = 163724 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 cctctcctccccctcatccatccc 28 |||||||||||||||| ||||||| Sbjct: 84128 cctctcctccccctcacccatccc 84105
>gb|AC129915.6| Homo sapiens chromosome 8, clone CTD-3212A4, complete sequence Length = 162359 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 tgcaccaaccacaccctcct 197 |||||||||||||||||||| Sbjct: 50857 tgcaccaaccacaccctcct 50838
>dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0516G10 Length = 148937 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 gcgcgccgccgtcgccgtcc 259 |||||||||||||||||||| Sbjct: 113684 gcgcgccgccgtcgccgtcc 113703
>dbj|AP004800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0585G03 Length = 173649 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 gcgcgccgccgtcgccgtcc 259 |||||||||||||||||||| Sbjct: 47952 gcgcgccgccgtcgccgtcc 47971
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ggtgcgcgccgccgtcgccg 256 |||||||||||||||||||| Sbjct: 3321266 ggtgcgcgccgccgtcgccg 3321247 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ggcggtggtgcgcgccgccg 250 |||||||||||||||||||| Sbjct: 914902 ggcggtggtgcgcgccgccg 914921 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 234 ggtggtgcgcgccgccgtcgccgt 257 ||||||||||||||||| |||||| Sbjct: 201865 ggtggtgcgcgccgccgccgccgt 201842
>gb|AY943952.1| Streptomyces sp. F11 plasmid pFP11, complete sequence Length = 35159 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 gcctcgcgcgcccgcgccgg 231 |||||||||||||||||||| Sbjct: 25137 gcctcgcgcgcccgcgccgg 25156
>dbj|AK071384.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093H10, full insert sequence Length = 1763 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 ggccgccggagatggcgacg 171 |||||||||||||||||||| Sbjct: 131 ggccgccggagatggcgacg 150
>dbj|AK069210.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012M02, full insert sequence Length = 1884 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 gcgcgccgccgtcgccgtcc 259 |||||||||||||||||||| Sbjct: 307 gcgcgccgccgtcgccgtcc 288
>gb|AE001826.1| Deinococcus radiodurans R1 plasmid MP1, complete sequence Length = 177466 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 153 gccgccggagatggcgacgctgag 176 |||||||||||||||| ||||||| Sbjct: 72228 gccgccggagatggcgccgctgag 72205
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tcctctcctccccctcatcc 23 |||||||||||||||||||| Sbjct: 15213970 tcctctcctccccctcatcc 15213951 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,344,633 Number of Sequences: 3902068 Number of extensions: 2344633 Number of successful extensions: 73828 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71704 Number of HSP's gapped (non-prelim): 2124 length of query: 370 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 348 effective length of database: 17,147,199,772 effective search space: 5967225520656 effective search space used: 5967225520656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
