ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast77e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NCLN_RAT (Q5XIA1) Nicalin precursor (Nicastrin-like protein) 28 6.6
2NCLN_MOUSE (Q8VCM8) Nicalin precursor (Nicastrin-like protein) 28 6.6
3NCLN_HUMAN (Q969V3) Nicalin precursor (Nicastrin-like protein) 28 6.6

>NCLN_RAT (Q5XIA1) Nicalin precursor (Nicastrin-like protein)|
          Length = 563

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 133 DAAAAVGVYRLIQYDLAGAPLG 198
           DAA    VYR+ QYDL G P G
Sbjct: 41  DAAHEFTVYRMQQYDLQGQPYG 62



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>NCLN_MOUSE (Q8VCM8) Nicalin precursor (Nicastrin-like protein)|
          Length = 563

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 133 DAAAAVGVYRLIQYDLAGAPLG 198
           DAA    VYR+ QYDL G P G
Sbjct: 41  DAAHEFTVYRMQQYDLQGQPYG 62



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>NCLN_HUMAN (Q969V3) Nicalin precursor (Nicastrin-like protein)|
          Length = 563

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 133 DAAAAVGVYRLIQYDLAGAPLG 198
           DAA    VYR+ QYDL G P G
Sbjct: 41  DAAHEFTVYRMQQYDLQGQPYG 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,492,732
Number of Sequences: 219361
Number of extensions: 42960
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 80,573,946
effective HSP length: 41
effective length of database: 71,580,145
effective search space used: 1717923480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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