ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast77e05 |
|---|---|
| Clone Library Name | barley_pub |
>SOX_ARATH (Q9SJA7) Probable sarcosine oxidase (EC 1.5.3.1)| Length = 416 Score = 104 bits (260), Expect = 1e-22 Identities = 58/164 (35%), Positives = 82/164 (50%), Gaps = 6/164 (3%) Frame = +1 Query: 13 RLWHDAERDAGYTVLTPTPHLDLGPRDGPAFVAAIAN---GGASELAPAGDASRPAWADA 183 RLW A+ + GY V PT D+GP D + ++ +A G + A ++ Sbjct: 74 RLWAAAQSEIGYKVHFPTQQFDMGPADQQSLLSVVATCQKHGLAHRVMDSHAVSEHFSGR 133 Query: 184 FRVPEGWAAATSGPAGVIKATKAMAMFQTLAAKMGXXXXXXXXXXXXXX--QEGNTIVVK 357 +PE W ++ G+IK TKA++MFQTLA G + G ++V Sbjct: 134 ISIPENWIGVSTELGGIIKPTKAVSMFQTLAIGHGAILRDNTKVANIKRDGESGEGVIVC 193 Query: 358 TSSGEEFHGGKCIITVGAWASKLVKSVTGADLPCSRCH-LVCYW 486 T G++F+G KCI+T GAW SKLVK+V G D P VCYW Sbjct: 194 TVKGDKFYGKKCIVTAGAWISKLVKTVAGIDFPVEPLETTVCYW 237
>MSOX_BACSN (P23342) Monomeric sarcosine oxidase (EC 1.5.3.1) (MSOX)| Length = 387 Score = 50.8 bits (120), Expect = 2e-06 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 5/149 (3%) Frame = +1 Query: 7 AHRLWHDAERDAGYTVLTPTPHLDLGPRDGPAFV-----AAIANGGASELAPAGDASRPA 171 A LW++ E++ + + T T L GP+ G AFV AA + EL G Sbjct: 69 AQELWYELEKETHHKIFTQTGVLVYGPKGGSAFVSETMEAANIHSLEHELF-EGKQLTDR 127 Query: 172 WADAFRVPEGWAAATSGPAGVIKATKAMAMFQTLAAKMGXXXXXXXXXXXXXXQEGNTIV 351 WA VP+ + A +GV+ + + ++ LA G E + + Sbjct: 128 WA-GVEVPDNYEAIFEPNSGVLFSENCIQAYRELAEAHGATVLTYTPVEDFEVTE-DLVT 185 Query: 352 VKTSSGEEFHGGKCIITVGAWASKLVKSV 438 +KT+ G + K ++++GAW SKL+ + Sbjct: 186 IKTAKG-SYTANKLVVSMGAWNSKLLSKL 213
>MSOX_BACB0 (P40859) Monomeric sarcosine oxidase (EC 1.5.3.1) (MSOX)| Length = 390 Score = 48.5 bits (114), Expect = 9e-06 Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 4/154 (2%) Frame = +1 Query: 7 AHRLWHDAERDAGYTVLTPTPHLDLGPRDGPAFVAAIANGGASELAPA----GDASRPAW 174 + LW++ E++ + + T T L GP+ AFVA GD W Sbjct: 69 SQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRW 128 Query: 175 ADAFRVPEGWAAATSGPAGVIKATKAMAMFQTLAAKMGXXXXXXXXXXXXXXQEGNTIVV 354 VPE + A +GV+ + + ++ LA G +++ + Sbjct: 129 -PGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISP-DSVKI 186 Query: 355 KTSSGEEFHGGKCIITVGAWASKLVKSVTGADLP 456 +T++G + K I+++GAW SKL+ S D+P Sbjct: 187 ETANG-SYTADKLIVSMGAWNSKLL-SKLNLDIP 218
>MSOX_ARTST (P40873) Monomeric sarcosine oxidase (EC 1.5.3.1) (MSOX)| Length = 388 Score = 44.7 bits (104), Expect = 1e-04 Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 4/148 (2%) Frame = +1 Query: 7 AHRLWHDAERDAGYTVLTPTPHLDLGPRDGPAFVAAIANGGASELAPA----GDASRPAW 174 A LW++ E++ + + T T L GP+ FVA G W Sbjct: 70 AQELWYELEKETHHKIFTKTGVLVFGPKGEAPFVAETMEAAKEHSLDVDLLEGSEINKRW 129 Query: 175 ADAFRVPEGWAAATSGPAGVIKATKAMAMFQTLAAKMGXXXXXXXXXXXXXXQEGNTIVV 354 VPE + A +GV+ + + ++ LA G E + + + Sbjct: 130 -PGVTVPENYNAIFEKNSGVLFSENCIRAYRELAEANGAKVLTYTPVEDFEIAE-DFVKI 187 Query: 355 KTSSGEEFHGGKCIITVGAWASKLVKSV 438 +T+ G F K I+++GAW SKL+ + Sbjct: 188 QTAYG-SFTASKLIVSMGAWNSKLLSKL 214
>SOX_RABIT (P79371) Peroxisomal sarcosine oxidase (EC 1.5.3.1) (PSO)| (L-pipecolate oxidase) (EC 1.5.3.7) (L-pipecolic acid oxidase) Length = 390 Score = 41.6 bits (96), Expect = 0.001 Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 3/162 (1%) Frame = +1 Query: 10 HRLWHDAERDAGYTVLTPTPHLDLGPRDGPAFVAAIANGGASELAPAGDASRPAWA--DA 183 +++W E +AG + T L LG ++ AN + +S Sbjct: 72 YQIWAQLEHEAGTQLHRQTGLLLLGMKENQELKTIQANLSRQRVEHQCLSSEELKQRFPN 131 Query: 184 FRVPEGWAAATSGPAGVIKATKAMAMFQTLAAKMGXXXXXXXXXXXXXXQEGNTIVVKTS 363 R+P G GVI A KA+ Q ++G G + VKT+ Sbjct: 132 IRLPRGEVGLLDNSGGVIYAYKALRALQDAIRQLG--GIVRDGEKVVEINPGLLVTVKTT 189 Query: 364 SGEEFHGGKCIITVGAWASKLVKSVTGADLPCSRCHL-VCYW 486 S + +IT G W ++L++ + G ++P + VCYW Sbjct: 190 S-RSYQAKSLVITAGPWTNQLLRPL-GIEMPLQTLRINVCYW 229
>SOX_HUMAN (Q9P0Z9) Peroxisomal sarcosine oxidase (EC 1.5.3.1) (PSO)| (L-pipecolate oxidase) (EC 1.5.3.7) (L-pipecolic acid oxidase) Length = 390 Score = 41.6 bits (96), Expect = 0.001 Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 3/162 (1%) Frame = +1 Query: 10 HRLWHDAERDAGYTVLTPTPHLDLGPRDGPAFVAAIANGGASELAPAGDASRPAWA--DA 183 +++W E +AG + T L LG ++ AN + +S Sbjct: 72 YQIWAQLEHEAGTQLHRQTGLLLLGMKENQELKTIQANLSRQRVEHQCLSSEELKQRFPN 131 Query: 184 FRVPEGWAAATSGPAGVIKATKAMAMFQTLAAKMGXXXXXXXXXXXXXXQEGNTIVVKTS 363 R+P G GVI A KA+ Q ++G G + VKT+ Sbjct: 132 IRLPRGEVGLLDNSGGVIYAYKALRALQDAIRQLG--GIVRDGEKVVEINPGLLVTVKTT 189 Query: 364 SGEEFHGGKCIITVGAWASKLVKSVTGADLPCSRCHL-VCYW 486 S + +IT G W ++L++ + G ++P + VCYW Sbjct: 190 S-RSYQAKSLVITAGPWTNQLLRPL-GIEMPLQTLRINVCYW 229
>PROB_CAUCR (Q9ABB6) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 377 Score = 33.5 bits (75), Expect = 0.31 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Frame = +1 Query: 73 LDLGPRDGPAFVAAIANGGASELAPAGD---ASRPAWADAFRVPEGWAAATSGPAGVIKA 243 + LG R P +AAIA G + L AG A+ AW P+GW +G A + A Sbjct: 244 ITLGSRPRP--LAAIAAGEKATLIEAGASPAAAYKAWIAGSLAPQGWVTVDAGAASALLA 301 Query: 244 TKAM 255 K++ Sbjct: 302 GKSL 305
>CUT2_CAEEL (P34682) Cuticlin-2 precursor| Length = 231 Score = 32.0 bits (71), Expect = 0.90 Identities = 19/48 (39%), Positives = 24/48 (50%) Frame = +1 Query: 88 RDGPAFVAAIANGGASELAPAGDASRPAWADAFRVPEGWAAATSGPAG 231 + GPAF A GGA + PA + PA A++ G AA S P G Sbjct: 145 QSGPAFGGAAPAGGAYQSGPAFGGAAPAVGGAYQA--GQAAVESAPLG 190
>PPIB_NEUCR (Q7S7Z6) Peptidyl-prolyl cis-trans isomerase B precursor (EC| 5.2.1.8) (PPIase B) (Rotamase B) Length = 207 Score = 30.4 bits (67), Expect = 2.6 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +1 Query: 43 GYTVLTPTPHLDLGPRDGPAFVAAIANGGASELAPAG 153 GY V+ + GPRD PA IA G E+ P G Sbjct: 166 GYDVVEKIENTKTGPRDAPAEPIKIAKSGELEVPPEG 202
>YURR_BACSU (O32159) Hypothetical oxidoreductase yurR (EC 1.-.-.-)| Length = 372 Score = 29.6 bits (65), Expect = 4.4 Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 5/148 (3%) Frame = +1 Query: 4 LAHRLWHDAERDAGYT-VLTPTPHLDLGPRDGPAFVAAIANGGASELAPAGDASRPAWAD 180 L H+L D E D GY V + H D D A A E+ GD +R + ++ Sbjct: 72 LIHQLEKDGESDTGYKRVGAISIHTDASKLDKMEERAYKRREDAPEI---GDITRLSASE 128 Query: 181 AFRV----PEGWAAATSGPAGVIKATKAMAMFQTLAAKMGXXXXXXXXXXXXXXQEGNTI 348 ++ +G+ + A + + A K G E T+ Sbjct: 129 TKKLFPILADGYESVHISGAARVNGRALCRSLLSAAEKRGATVIKGNASLLF---ENGTV 185 Query: 349 VVKTSSGEEFHGGKCIITVGAWASKLVK 432 + ++F I+T GAWA++++K Sbjct: 186 TGVQTDTKQFAADAVIVTAGAWANEILK 213
>FOXE1_MOUSE (Q8R2I0) Forkhead box protein E1 (Thyroid transcription factor 2)| (TTF-2) Length = 371 Score = 29.3 bits (64), Expect = 5.8 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 7/80 (8%) Frame = +1 Query: 67 PHLDLGPRDGPAFVAAIANGGASELAPAGDAS-----RPAWADAFRV--PEGWAAATSGP 225 P L P GPA AA GG+ A A A+ +PA R P +AAA +GP Sbjct: 224 PERPLSPDLGPAPSAA---GGSCAFAAAAGAAGTGSFQPAVCTGARPVNPAAYAAAYAGP 280 Query: 226 AGVIKATKAMAMFQTLAAKM 285 G + A+F A ++ Sbjct: 281 DGAYPQGASSALFAAAAGRL 300
>GSLG1_RAT (Q62638) Golgi apparatus protein 1 precursor (Golgi| sialoglycoprotein MG-160) (E-selectin ligand 1) (ESL-1) Length = 1171 Score = 29.3 bits (64), Expect = 5.8 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +1 Query: 388 KCIITVGAWASKLVKSVTGADLPCSRCHL 474 KC+I +G W S+ K+ TG +L C + HL Sbjct: 630 KCLIDLGKWCSE--KTETGQELECLQDHL 656
>GSLG1_MOUSE (Q61543) Golgi apparatus protein 1 precursor (Golgi| sialoglycoprotein MG-160) (E-selectin ligand 1) (ESL-1) (Selel) Length = 1175 Score = 29.3 bits (64), Expect = 5.8 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +1 Query: 388 KCIITVGAWASKLVKSVTGADLPCSRCHL 474 KC+I +G W S+ K+ TG +L C + HL Sbjct: 634 KCLIDLGKWCSE--KTETGQELECLQDHL 660
>GSLG1_HUMAN (Q92896) Golgi apparatus protein 1 precursor (Golgi| sialoglycoprotein MG-160) (E-selectin ligand 1) (ESL-1) (Cysteine-rich fibroblast growth factor receptor) (CFR-1) Length = 1179 Score = 29.3 bits (64), Expect = 5.8 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +1 Query: 388 KCIITVGAWASKLVKSVTGADLPCSRCHL 474 KC+I +G W S+ K+ TG +L C + HL Sbjct: 638 KCLIDLGKWCSE--KTETGQELECLQDHL 664
>GSLG1_CRIGR (Q9Z1E9) Golgi apparatus protein 1 precursor (Golgi| sialoglycoprotein MG-160) (E-selectin ligand 1) (ESL-1) (Latent TGF-beta complexed protein 1) (LTCP-1) Length = 1160 Score = 29.3 bits (64), Expect = 5.8 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +1 Query: 388 KCIITVGAWASKLVKSVTGADLPCSRCHL 474 KC+I +G W S+ K+ TG +L C + HL Sbjct: 619 KCLIDLGKWCSE--KTETGQELECLQDHL 645
>NSP1_YEAST (P14907) Nucleoporin NSP1 (Nuclear pore protein NSP1)| (Nucleoskeletal-like protein) (p110) Length = 823 Score = 29.3 bits (64), Expect = 5.8 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +1 Query: 112 AIANGGASELAPAGDASRPAWADAFRVPEGWAAATSGPA 228 A + G S+ GDAS+PA++ + E A+ATS PA Sbjct: 359 AFSFGAKSDEKKDGDASKPAFSFGAKPDENKASATSKPA 397
>FETUA_PIG (P29700) Alpha-2-HS-glycoprotein precursor (Fetuin-A) (Fragment)| Length = 362 Score = 28.9 bits (63), Expect = 7.6 Identities = 23/76 (30%), Positives = 31/76 (40%) Frame = +1 Query: 163 RPAWADAFRVPEGWAAATSGPAGVIKATKAMAMFQTLAAKMGXXXXXXXXXXXXXXQEGN 342 +PA ADA P AAAT+ P + A + +A G G Sbjct: 257 QPAGADAGATPVVDAAATASPLADVPAASLVVGPMVVAVPPGIPPVHRSHYDLRHSFSG- 315 Query: 343 TIVVKTSSGEEFHGGK 390 V+++SGE FH GK Sbjct: 316 VASVESASGEAFHVGK 331
>GPRK2_DROME (P32866) G protein-coupled receptor kinase 2 (EC 2.7.11.16)| Length = 714 Score = 28.5 bits (62), Expect = 9.9 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = +1 Query: 331 QEGNTIVVKTSSGEEFHGGKCIITVGAWASKLVKSVTGADL 453 QEG+ K GE GGKC + VG + +LV V DL Sbjct: 210 QEGHDDAEKGGGGEGGGGGKC-VHVGGYPDELVLDVLNDDL 249
>THIED_COREF (Q8FTH8) Multifunctional protein thiED [Includes:| Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase); Phosphomethylpyrimidine kinase (EC 2.7.4.7) (HMP-phosphate kinase) (HMP-P k Length = 739 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = +1 Query: 58 TPTPHLDLGPRDGPAFVAAIANGGASELAPAGDASRPAW 174 TP PHL +G + A LAPAG +R W Sbjct: 494 TPWPHLRMGAPSDGIITPSDTQSPAPALAPAGPYTRALW 532
>GLMM_BIFLO (Q8G533) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 461 Score = 28.5 bits (62), Expect = 9.9 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Frame = +1 Query: 85 PRDGPAFVAAIANGGASELAPAGDASRPAWADAFRV---PEGWAAATSGPAGVIKATKAM 255 P G VA ANG S +AP +A R A AD + P+G+ + AG + Sbjct: 184 PLKGLKIVADCANGATSVVAP--EALRRAGADVIVINASPDGYNINKN--AGSTHPEQLQ 239 Query: 256 AMFQTLAAKMGXXXXXXXXXXXXXXQEGNTI 348 AM + A MG ++GN I Sbjct: 240 AMVKATDAVMGVAFDGDADRCLAVDEDGNMI 270 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,341,958 Number of Sequences: 219361 Number of extensions: 874485 Number of successful extensions: 3280 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3268 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
