ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast77e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009333.1| Triticum aestivum clone wlm4.pk0002.c12:fis, full... 408 e-111
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 157 4e-35
4emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa... 157 4e-35
5emb|AL732647.4|CNS08C9M Oryza sativa chromosome 12, . BAC OSJNBb... 157 4e-35
6gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome... 155 2e-34
7dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
8gb|BT016536.1| Zea mays clone Contig369 mRNA sequence 94 5e-16
9gb|AY106340.1| Zea mays PCO143515 mRNA sequence 94 5e-16
10ref|NM_183735.1| Oryza sativa (japonica cultivar-group), predic... 82 2e-12
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
12dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
13ref|XM_481905.1| Oryza sativa (japonica cultivar-group), mRNA 64 5e-07
14dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
15dbj|AP005520.3| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
16dbj|AP005096.2| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
17gb|BT018493.1| Zea mays clone EL01N0425H03.d mRNA sequence 52 0.002
18dbj|AP005512.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
19emb|AL713944.3|CNS07YPN Oryza sativa chromosome 12, . BAC OJ1116... 46 0.11
20gb|AE005903.1| Caulobacter crescentus CB15 section 229 of 359 of... 44 0.42
21dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.42
22gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 42 1.7
23emb|BX248343.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 42 1.7
24emb|AJ811516.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
25emb|AJ811514.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
26emb|AJ811513.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
27emb|AJ811512.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
28emb|AJ811511.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
29emb|AJ811510.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
30emb|AJ811508.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
31emb|AJ811506.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
32emb|AJ811504.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
33emb|AJ811503.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
34emb|AJ811501.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
35emb|AJ811500.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
36emb|AJ811499.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
37emb|AJ811498.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
38emb|AJ811496.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
39emb|AJ811495.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
40emb|AJ811494.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
41emb|AJ811490.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
42emb|AJ811488.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
43emb|AJ811485.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
44emb|AJ811483.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
45emb|AJ811481.1| Uncultured bacterium partial nirS gene for putat... 42 1.7
46gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 1.7
47emb|X98350.1|GAHBC G.aeglefinus mRNA for haemoglobin beta-chain 42 1.7
48gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 42 1.7
49emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome... 42 1.7
50emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.7
51emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 42 1.7
52emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 42 1.7
53emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g... 42 1.7
54emb|BX640415.1| Bordetella pertussis strain Tohama I, complete g... 42 1.7
55emb|AJ440494.1|IBA440494 Pseudomonas sp. BA2.5 partial nirS gene... 42 1.7
56gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.7
57gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.7
58emb|AJ628421.2| Micromonospora olivasterospora fortimicin biosyn... 42 1.7
59ref|XM_474606.1| Oryza sativa (japonica cultivar-group), predic... 40 6.6
60gb|AY023162.1| Oryza sativa microsatellite MRG5487 containing (G... 40 6.6
61gb|AY632751.1| Mycobacterium avium esterase (lipL) gene, complet... 40 6.6
62gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 6.6
63gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 6.6
64gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 6.6
65ref|XM_983991.1| PREDICTED: Mus musculus SRY-box containing gene... 40 6.6
66ref|XM_751870.1| Ustilago maydis 521 hypothetical protein (UM008... 40 6.6
67emb|AL158205.12| Human DNA sequence from clone RP11-177F4 on chr... 40 6.6
68emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome... 40 6.6
69emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 40 6.6
70emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.6
71emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 6.6
72emb|AL663013.4|OSJN00214 Oryza sativa genomic DNA, chromosome 4,... 40 6.6
73emb|AJ576039.1|GWE576039 Gordonia westfalica strain DSM44215T pl... 40 6.6
74emb|AL645948.10| Mouse DNA sequence from clone RP23-298M7 on chr... 40 6.6
75gb|AE006470.1| Chlorobium tepidum TLS, complete genome 40 6.6
76dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
77dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
78dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
79gb|AF197466.1|AF197466 Pseudomonas fluorescens NirP (nirP), NirO... 40 6.6
80dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.6
81gb|AY005801.1| Mus musculus Sox-30 mRNA, complete cds 40 6.6
82gb|AC158486.2| Capitella capitata clone JGIAUTO-1A14, complete s... 40 6.6
83dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.6
84dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
85dbj|AP005653.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
86gb|AF081810.1|AF081810 Lymantria dispar nucleopolyhedrovirus, co... 40 6.6
87emb|AL773560.9| Pig DNA sequence from clone XX-514B12, complete ... 40 6.6
88gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 6.6
89gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 6.6
90ref|NM_173384.1| Mus musculus SRY-box containing gene 30 (Sox30)... 40 6.6 
>gb|BT009333.1| Triticum aestivum clone wlm4.pk0002.c12:fis, full insert mRNA
           sequence
          Length = 1604

 Score =  408 bits (206), Expect = e-111
 Identities = 422/488 (86%), Gaps = 12/488 (2%)
 Strand = Plus / Plus

                                                                       
Query: 12  ccgcctctggcacgacgccgagcgcgacgccggctacaccgtgctcacgcccaccccgca 71
           |||||||||| |||||||  |||||||| |||| ||| ||||||||||||||||||||||
Sbjct: 296 ccgcctctgggacgacgcgcagcgcgactccgggtacgccgtgctcacgcccaccccgca 355

                                                                       
Query: 72  cctcgacctggggccccgagacgggccggccttcgtcgccgccatcgccaacggcggcgc 131
           |||||||||||| || || ||||  ||||| ||||||||| || ||||||||||||||||
Sbjct: 356 cctcgacctgggcccgcgggacgacccggcgttcgtcgcctccgtcgccaacggcggcgc 415

                                                                       
Query: 132 cagcgagctcgccccggcaggggacgcatcgcggccagcgtgggcggatgccttcagggt 191
           || |   |||||| |||| | ||||||  | || ||| ||||||||||||| ||||||||
Sbjct: 416 caccttcctcgcctcggcggcggacgcgccacgcccatcgtgggcggatgcgttcagggt 475

                                                                       
Query: 192 gccggaggggtgggccgcggcgaccagcgggccggccggtgtgataaaggcgaccaaggc 251
           ||| || |||||||| ||||||| ||||| || || ||| ||||| ||||||||||||||
Sbjct: 476 gcccgacgggtgggcggcggcgagcagcgagctgggcggggtgatgaaggcgaccaaggc 535

                                                                       
Query: 252 gatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagggacagggcgga 311
           | |||||||||||||  |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 536 ggtggccatgttccaggcgctggccgccaagatgggcgccgtcgtgagggacaggacgga 595

                                                                       
Query: 312 ggtggtagacgtcgccaggca---agaaggaa--ac----acgatcgtggtgaagacatc 362
           ||| || |||||||||||| |   ||||||||  ||    |||||||||||||||||| |
Sbjct: 596 ggtcgtcgacgtcgccaggaaaggagaaggaacgacggcgacgatcgtggtgaagacagc 655

                                                                       
Query: 363 aagcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgtgggcgagcaa 422
            | ||| |||||||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct: 656 taccggcgaggagttccacggcggcaagtgcatcatcaccgtcggcgcgtggacgagcaa 715

                                                                       
Query: 423 gctggtgaagtcggtcaccggcgccgacctg-ccgtgcagccggtgc-ca-cctcgtctg 479
           |||||| |||||||||||||||||||||||| ||||||||||| ||| || |||| ||||
Sbjct: 716 gctggtcaagtcggtcaccggcgccgacctgcccgtgcagccgctgcacaccctcatctg 775

                   
Query: 480 ctactgga 487
           ||||||||
Sbjct: 776 ctactgga 783
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  157 bits (79), Expect = 4e-35
 Identities = 133/147 (90%), Gaps = 3/147 (2%)
 Strand = Plus / Plus

                                                                            
Query: 344      cgatcgtggtgaagacatcaagcggggaggagttccacggcggcaagtgcatcatcacgg 403
                ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| |
Sbjct: 21904483 cgatcttggtgaagacgtcgagcggggaggagttccacggcgccaagtgcatcatcacag 21904542

                                                                            
Query: 404      tgggcgcgtgggcgagcaagctggtgaagtcggtcaccggcgccgacctgcc-gtgcagc 462
                |||||||||||||||||||||| || ||||||||| |||||| ||||||||| |||||||
Sbjct: 21904543 tgggcgcgtgggcgagcaagcttgtcaagtcggtcgccggcgtcgacctgccagtgcagc 21904602

                                           
Query: 463      cggtgc-cac-ctcgtctgctactgga 487
                || ||| ||| ||| ||||||||||||
Sbjct: 21904603 cgctgcacacgctcatctgctactgga 21904629



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 118/144 (81%)
 Strand = Plus / Plus

                                                                            
Query: 191      tgccggaggggtgggccgcggcgaccagcgggccggccggtgtgataaaggcgaccaagg 250
                |||| ||||||||| | ||||||| ||||| ||  | ||| || || ||||| |||||||
Sbjct: 21903950 tgcccgaggggtggacggcggcgagcagcgagctcggcggcgtcatcaaggccaccaagg 21904009

                                                                            
Query: 251      cgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagggacagggcgg 310
                || | |||||||||||  |||||||||||||||  ||||||||  | ||||||||| |||
Sbjct: 21904010 cggttgccatgttccagtcgctcgccgccaagaacggcgccgtgctcagggacaggacgg 21904069

                                        
Query: 311      aggtggtagacgtcgccaggcaag 334
                ||||| | ||| |||||| |||||
Sbjct: 21904070 aggtgatcgacatcgccaagcaag 21904093



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 399      cacggtgggcgcgtgggcgagcaagctggtgaagtcggtcaccggcg 445
                |||||||||||| | | ||||||||||||| ||||| ||| ||||||
Sbjct: 20268304 cacggtgggcgcctagacgagcaagctggtcaagtccgtcgccggcg 20268258
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  157 bits (79), Expect = 4e-35
 Identities = 133/147 (90%), Gaps = 3/147 (2%)
 Strand = Plus / Plus

                                                                            
Query: 344      cgatcgtggtgaagacatcaagcggggaggagttccacggcggcaagtgcatcatcacgg 403
                ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| |
Sbjct: 21832828 cgatcttggtgaagacgtcgagcggggaggagttccacggcgccaagtgcatcatcacag 21832887

                                                                            
Query: 404      tgggcgcgtgggcgagcaagctggtgaagtcggtcaccggcgccgacctgcc-gtgcagc 462
                |||||||||||||||||||||| || ||||||||| |||||| ||||||||| |||||||
Sbjct: 21832888 tgggcgcgtgggcgagcaagcttgtcaagtcggtcgccggcgtcgacctgccagtgcagc 21832947

                                           
Query: 463      cggtgc-cac-ctcgtctgctactgga 487
                || ||| ||| ||| ||||||||||||
Sbjct: 21832948 cgctgcacacgctcatctgctactgga 21832974



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 118/144 (81%)
 Strand = Plus / Plus

                                                                            
Query: 191      tgccggaggggtgggccgcggcgaccagcgggccggccggtgtgataaaggcgaccaagg 250
                |||| ||||||||| | ||||||| ||||| ||  | ||| || || ||||| |||||||
Sbjct: 21832295 tgcccgaggggtggacggcggcgagcagcgagctcggcggcgtcatcaaggccaccaagg 21832354

                                                                            
Query: 251      cgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagggacagggcgg 310
                || | |||||||||||  |||||||||||||||  ||||||||  | ||||||||| |||
Sbjct: 21832355 cggttgccatgttccagtcgctcgccgccaagaacggcgccgtgctcagggacaggacgg 21832414

                                        
Query: 311      aggtggtagacgtcgccaggcaag 334
                ||||| | ||| |||||| |||||
Sbjct: 21832415 aggtgatcgacatcgccaagcaag 21832438



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 399      cacggtgggcgcgtgggcgagcaagctggtgaagtcggtcaccggcg 445
                |||||||||||| | | ||||||||||||| ||||| ||| ||||||
Sbjct: 20194518 cacggtgggcgcctagacgagcaagctggtcaagtccgtcgccggcg 20194472
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>emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa0062E22 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 138308

 Score =  157 bits (79), Expect = 4e-35
 Identities = 133/147 (90%), Gaps = 3/147 (2%)
 Strand = Plus / Plus

                                                                         
Query: 344   cgatcgtggtgaagacatcaagcggggaggagttccacggcggcaagtgcatcatcacgg 403
             ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| |
Sbjct: 10611 cgatcttggtgaagacgtcgagcggggaggagttccacggcgccaagtgcatcatcacag 10670

                                                                         
Query: 404   tgggcgcgtgggcgagcaagctggtgaagtcggtcaccggcgccgacctgcc-gtgcagc 462
             |||||||||||||||||||||| || ||||||||| |||||| ||||||||| |||||||
Sbjct: 10671 tgggcgcgtgggcgagcaagcttgtcaagtcggtcgccggcgtcgacctgccagtgcagc 10730

                                        
Query: 463   cggtgc-cac-ctcgtctgctactgga 487
             || ||| ||| ||| ||||||||||||
Sbjct: 10731 cgctgcacacgctcatctgctactgga 10757



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 118/144 (81%)
 Strand = Plus / Plus

                                                                         
Query: 191   tgccggaggggtgggccgcggcgaccagcgggccggccggtgtgataaaggcgaccaagg 250
             |||| ||||||||| | ||||||| ||||| ||  | ||| || || ||||| |||||||
Sbjct: 10078 tgcccgaggggtggacggcggcgagcagcgagctcggcggcgtcatcaaggccaccaagg 10137

                                                                         
Query: 251   cgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagggacagggcgg 310
             || | |||||||||||  |||||||||||||||  ||||||||  | ||||||||| |||
Sbjct: 10138 cggttgccatgttccagtcgctcgccgccaagaacggcgccgtgctcagggacaggacgg 10197

                                     
Query: 311   aggtggtagacgtcgccaggcaag 334
             ||||| | ||| |||||| |||||
Sbjct: 10198 aggtgatcgacatcgccaagcaag 10221
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>emb|AL732647.4|CNS08C9M Oryza sativa chromosome 12, . BAC OSJNBb0087J18 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 121592

 Score =  157 bits (79), Expect = 4e-35
 Identities = 133/147 (90%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                         
Query: 344   cgatcgtggtgaagacatcaagcggggaggagttccacggcggcaagtgcatcatcacgg 403
             ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| |
Sbjct: 18849 cgatcttggtgaagacgtcgagcggggaggagttccacggcgccaagtgcatcatcacag 18790

                                                                         
Query: 404   tgggcgcgtgggcgagcaagctggtgaagtcggtcaccggcgccgacctgcc-gtgcagc 462
             |||||||||||||||||||||| || ||||||||| |||||| ||||||||| |||||||
Sbjct: 18789 tgggcgcgtgggcgagcaagcttgtcaagtcggtcgccggcgtcgacctgccagtgcagc 18730

                                        
Query: 463   cggtgc-cac-ctcgtctgctactgga 487
             || ||| ||| ||| ||||||||||||
Sbjct: 18729 cgctgcacacgctcatctgctactgga 18703



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 118/144 (81%)
 Strand = Plus / Minus

                                                                         
Query: 191   tgccggaggggtgggccgcggcgaccagcgggccggccggtgtgataaaggcgaccaagg 250
             |||| ||||||||| | ||||||| ||||| ||  | ||| || || ||||| |||||||
Sbjct: 19382 tgcccgaggggtggacggcggcgagcagcgagctcggcggcgtcatcaaggccaccaagg 19323

                                                                         
Query: 251   cgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagggacagggcgg 310
             || | |||||||||||  |||||||||||||||  ||||||||  | ||||||||| |||
Sbjct: 19322 cggttgccatgttccagtcgctcgccgccaagaacggcgccgtgctcagggacaggacgg 19263

                                     
Query: 311   aggtggtagacgtcgccaggcaag 334
             ||||| | ||| |||||| |||||
Sbjct: 19262 aggtgatcgacatcgccaagcaag 19239
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>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0019D02, complete sequence
          Length = 154692

 Score =  155 bits (78), Expect = 2e-34
 Identities = 112/122 (91%), Gaps = 1/122 (0%)
 Strand = Plus / Minus

                                                                         
Query: 344   cgatcgtggtgaagacatcaagcggggaggagttccacggcggcaagtgcatcatcacgg 403
             ||||||||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||
Sbjct: 27204 cgatcgtggtgaagacatcgagcggcgaggagttccatggcgccaagtgcatcatcacgg 27145

                                                                         
Query: 404   tgggcgcgtgggcgagcaagctggtgaagtcggtcaccggcgccgacctgcc-gtgcagc 462
             ||||||| ||||| ||||||||||||| ||||||| |||||| ||||||||| |||||||
Sbjct: 27144 tgggcgcctgggccagcaagctggtgaggtcggtcgccggcgtcgacctgccggtgcagc 27085

               
Query: 463   cg 464
             ||
Sbjct: 27084 cg 27083



 Score =  109 bits (55), Expect = 9e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                         
Query: 184   ttcagggtgccggaggggtgggccgcggcgaccagcgggccggccggtgtgataaaggcg 243
             |||||| |||| ||||||||| | |||||||| |||| |   | ||| ||||| ||||||
Sbjct: 29282 ttcaggctgcccgaggggtggacggcggcgacgagcgagatcggcggcgtgatgaaggcg 29223

                                                                         
Query: 244   accaaggcgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagggac 303
             ||||||||| |||||||||||||  |||||||||||||||  |||||||||||| |||||
Sbjct: 29222 accaaggcggtggccatgttccagtcgctcgccgccaagaacggcgccgtcgtgcgggac 29163

                        
Query: 304   agggcggaggt 314
             ||| |||||||
Sbjct: 29162 aggacggaggt 29152



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 68/77 (88%)
 Strand = Plus / Minus

                                                                         
Query: 13    cgcctctggcacgacgccgagcgcgacgccggctacaccgtgctcacgcccaccccgcac 72
             ||||||||| |||||||| |||||||||||||||||  ||||||||| || || ||||||
Sbjct: 29450 cgcctctgggacgacgcccagcgcgacgccggctaccgcgtgctcaccccgacgccgcac 29391

                              
Query: 73    ctcgacctggggccccg 89
             |||||| |||| |||||
Sbjct: 29390 ctcgacatgggcccccg 29374
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  155 bits (78), Expect = 2e-34
 Identities = 112/122 (91%), Gaps = 1/122 (0%)
 Strand = Plus / Minus

                                                                            
Query: 344      cgatcgtggtgaagacatcaagcggggaggagttccacggcggcaagtgcatcatcacgg 403
                ||||||||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||
Sbjct: 18981940 cgatcgtggtgaagacatcgagcggcgaggagttccatggcgccaagtgcatcatcacgg 18981881

                                                                            
Query: 404      tgggcgcgtgggcgagcaagctggtgaagtcggtcaccggcgccgacctgcc-gtgcagc 462
                ||||||| ||||| ||||||||||||| ||||||| |||||| ||||||||| |||||||
Sbjct: 18981880 tgggcgcctgggccagcaagctggtgaggtcggtcgccggcgtcgacctgccggtgcagc 18981821

                  
Query: 463      cg 464
                ||
Sbjct: 18981820 cg 18981819



 Score =  109 bits (55), Expect = 9e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                            
Query: 184      ttcagggtgccggaggggtgggccgcggcgaccagcgggccggccggtgtgataaaggcg 243
                |||||| |||| ||||||||| | |||||||| |||| |   | ||| ||||| ||||||
Sbjct: 18984019 ttcaggctgcccgaggggtggacggcggcgacgagcgagatcggcggcgtgatgaaggcg 18983960

                                                                            
Query: 244      accaaggcgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagggac 303
                ||||||||| |||||||||||||  |||||||||||||||  |||||||||||| |||||
Sbjct: 18983959 accaaggcggtggccatgttccagtcgctcgccgccaagaacggcgccgtcgtgcgggac 18983900

                           
Query: 304      agggcggaggt 314
                ||| |||||||
Sbjct: 18983899 aggacggaggt 18983889



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 68/77 (88%)
 Strand = Plus / Minus

                                                                            
Query: 13       cgcctctggcacgacgccgagcgcgacgccggctacaccgtgctcacgcccaccccgcac 72
                ||||||||| |||||||| |||||||||||||||||  ||||||||| || || ||||||
Sbjct: 18984187 cgcctctgggacgacgcccagcgcgacgccggctaccgcgtgctcaccccgacgccgcac 18984128

                                 
Query: 73       ctcgacctggggccccg 89
                |||||| |||| |||||
Sbjct: 18984127 ctcgacatgggcccccg 18984111
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>gb|BT016536.1| Zea mays clone Contig369 mRNA sequence
          Length = 1567

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 65/71 (91%)
 Strand = Plus / Plus

                                                                       
Query: 13  cgcctctggcacgacgccgagcgcgacgccggctacaccgtgctcacgcccaccccgcac 72
           ||||||||| |||| ||| ||  ||||||||| |||||||||||||||||||||||||||
Sbjct: 314 cgcctctgggacgaggcccaggccgacgccgggtacaccgtgctcacgcccaccccgcac 373

                      
Query: 73  ctcgacctggg 83
           |||||||||||
Sbjct: 374 ctcgacctggg 384



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 115/140 (82%), Gaps = 3/140 (2%)
 Strand = Plus / Plus

                                                                       
Query: 351 ggtgaagacatcaagcggggaggagttccacggcggcaagtgcatcatcacggtgggcgc 410
           ||||| ||| || ||||| |||||||||||||||   || |||||  | || ||||||||
Sbjct: 667 ggtgaggacgtccagcggcgaggagttccacggcacgaaatgcatagtgacagtgggcgc 726

                                                                       
Query: 411 gtgggcgagcaagctggtgaagtcggtcaccggcgccgacctgcc-gtgcagccggtgc- 468
            ||| ||||||||||| | |||||||| ||||||   || ||||| ||||||||||||| 
Sbjct: 727 atggacgagcaagctgatcaagtcggtgaccggcctggagctgccggtgcagccggtgca 786

                               
Query: 469 cac-ctcgtctgctactgga 487
           ||| ||| ||||||||||||
Sbjct: 787 cacgctcatctgctactgga 806



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                       
Query: 238 aaggcgaccaaggcgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtg 297
           ||||| ||||||||  |||||||||||||  ||||||||| |||||  ||||||||| | 
Sbjct: 539 aaggccaccaaggccgtggccatgttccaggcgctcgccgtcaagagaggcgccgtcctc 598

                               
Query: 298 agggacagggcggaggtggt 317
           | ||||||| | ||||||||
Sbjct: 599 aaggacaggactgaggtggt 618
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>gb|AY106340.1| Zea mays PCO143515 mRNA sequence
          Length = 1558

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 65/71 (91%)
 Strand = Plus / Plus

                                                                       
Query: 13  cgcctctggcacgacgccgagcgcgacgccggctacaccgtgctcacgcccaccccgcac 72
           ||||||||| |||| ||| ||  ||||||||| |||||||||||||||||||||||||||
Sbjct: 315 cgcctctgggacgaggcccaggccgacgccgggtacaccgtgctcacgcccaccccgcac 374

                      
Query: 73  ctcgacctggg 83
           |||||||||||
Sbjct: 375 ctcgacctggg 385



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 115/140 (82%), Gaps = 3/140 (2%)
 Strand = Plus / Plus

                                                                       
Query: 351 ggtgaagacatcaagcggggaggagttccacggcggcaagtgcatcatcacggtgggcgc 410
           ||||| ||| || ||||| |||||||||||||||   || |||||  | || ||||||||
Sbjct: 668 ggtgaggacgtccagcggcgaggagttccacggcacgaaatgcatagtgacagtgggcgc 727

                                                                       
Query: 411 gtgggcgagcaagctggtgaagtcggtcaccggcgccgacctgcc-gtgcagccggtgc- 468
            ||| ||||||||||| | |||||||| ||||||   || ||||| ||||||||||||| 
Sbjct: 728 atggacgagcaagctgatcaagtcggtgaccggcctggagctgccggtgcagccggtgca 787

                               
Query: 469 cac-ctcgtctgctactgga 487
           ||| ||| ||||||||||||
Sbjct: 788 cacgctcatctgctactgga 807



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                       
Query: 238 aaggcgaccaaggcgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtg 297
           ||||| ||||||||  |||||||||||||  ||||||||| |||||  ||||||||| | 
Sbjct: 540 aaggccaccaaggccgtggccatgttccaggcgctcgccgtcaagagaggcgccgtcctc 599

                               
Query: 298 agggacagggcggaggtggt 317
           | ||||||| | ||||||||
Sbjct: 600 aaggacaggactgaggtggt 619
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>ref|NM_183735.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1245

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                       
Query: 365 gcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgtgggcgagcaagc 424
           |||| |||||||||||||||| ||||||| || | ||||||||||| ||| |||||||||
Sbjct: 611 gcggcgaggagttccacggcgccaagtgcgtcgtgacggtgggcgcctggacgagcaagc 670

                                
Query: 425 tggtgaagtcggtcaccggcg 445
           |||| ||||| ||| ||||||
Sbjct: 671 tggtcaagtccgtcgccggcg 691



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                       
Query: 241 gcgaccaaggcgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagg 300
           |||||||||||| |||||||||||||  ||||||||| ||||  |||||||||||| |||
Sbjct: 484 gcgaccaaggcggtggccatgttccaggcgctcgccgtcaaggggggcgccgtcgtcagg 543

                         
Query: 301 gacagggcggaggt 314
           ||||  ||||||||
Sbjct: 544 gacaacgcggaggt 557
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                            
Query: 365      gcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgtgggcgagcaagc 424
                |||| |||||||||||||||| ||||||| || | ||||||||||| ||| |||||||||
Sbjct: 11927906 gcggcgaggagttccacggcgccaagtgcgtcgtgacggtgggcgcctggacgagcaagc 11927847

                                     
Query: 425      tggtgaagtcggtcaccggcg 445
                |||| ||||| ||| ||||||
Sbjct: 11927846 tggtcaagtccgtcgccggcg 11927826



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                            
Query: 241      gcgaccaaggcgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagg 300
                |||||||||||| |||||||||||||  ||||||||| ||||  |||||||||||| |||
Sbjct: 11928033 gcgaccaaggcggtggccatgttccaggcgctcgccgtcaaggggggcgccgtcgtcagg 11927974

                              
Query: 301      gacagggcggaggt 314
                ||||  ||||||||
Sbjct: 11927973 gacaacgcggaggt 11927960
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>dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1012D10
          Length = 168267

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                          
Query: 365    gcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgtgggcgagcaagc 424
              |||| |||||||||||||||| ||||||| || | ||||||||||| ||| |||||||||
Sbjct: 140191 gcggcgaggagttccacggcgccaagtgcgtcgtgacggtgggcgcctggacgagcaagc 140132

                                   
Query: 425    tggtgaagtcggtcaccggcg 445
              |||| ||||| ||| ||||||
Sbjct: 140131 tggtcaagtccgtcgccggcg 140111



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                          
Query: 241    gcgaccaaggcgatggccatgttccaaacgctcgccgccaagatgggcgccgtcgtgagg 300
              |||||||||||| |||||||||||||  ||||||||| ||||  |||||||||||| |||
Sbjct: 140318 gcgaccaaggcggtggccatgttccaggcgctcgccgtcaaggggggcgccgtcgtcagg 140259

                            
Query: 301    gacagggcggaggt 314
              ||||  ||||||||
Sbjct: 140258 gacaacgcggaggt 140245
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>ref|XM_481905.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 303

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                       
Query: 365 gcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgtgggcgagcaagc 424
           |||| ||||||||||||||||  ||||||||| | ||||||||||  ||| |||||||||
Sbjct: 236 gcggcgaggagttccacggcgctaagtgcatcgtgacggtgggcgtctggacgagcaagc 177

               
Query: 425 tggt 428
           ||||
Sbjct: 176 tggt 173
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                            
Query: 365      gcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgtgggcgagcaagc 424
                |||| ||||||||||||||||  ||||||||| | ||||||||||  ||| |||||||||
Sbjct: 16295559 gcggcgaggagttccacggcgctaagtgcatcgtgacggtgggcgtctggacgagcaagc 16295500

                    
Query: 425      tggt 428
                ||||
Sbjct: 16295499 tggt 16295496



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                            
Query: 364      agcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgtgggcgagcaag 423
                ||||| |||| |||||||||||  |||||| || | ||||||||||| | | ||||||||
Sbjct: 15922650 agcggcgaggtgttccacggcgctaagtgcgtcgtgacggtgggcgcctagacgagcaag 15922591

                     
Query: 424      ctggt 428
                |||||
Sbjct: 15922590 ctggt 15922586
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>dbj|AP005520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0426E02
          Length = 166985

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                        
Query: 365  gcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgtgggcgagcaagc 424
            |||| ||||||||||||||||  ||||||||| | ||||||||||  ||| |||||||||
Sbjct: 1411 gcggcgaggagttccacggcgctaagtgcatcgtgacggtgggcgtctggacgagcaagc 1352

                
Query: 425  tggt 428
            ||||
Sbjct: 1351 tggt 1348
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>dbj|AP005096.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1104G07
          Length = 119643

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                         
Query: 365   gcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgtgggcgagcaagc 424
             |||| ||||||||||||||||  ||||||||| | ||||||||||  ||| |||||||||
Sbjct: 85737 gcggcgaggagttccacggcgctaagtgcatcgtgacggtgggcgtctggacgagcaagc 85678

                 
Query: 425   tggt 428
             ||||
Sbjct: 85677 tggt 85674
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>gb|BT018493.1| Zea mays clone EL01N0425H03.d mRNA sequence
          Length = 1475

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 365 gcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgtgggcgagcaagc 424
           |||| |||| ||||| ||||| || |||| || ||||||||||||||||||||  |||||
Sbjct: 689 gcggcgaggcgttccgcggcgccaggtgcgtcgtcacggtgggcgcgtgggcggccaagc 748

             
Query: 425 tg 426
           ||
Sbjct: 749 tg 750
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>dbj|AP005512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0012O03
          Length = 141860

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                          
Query: 364    agcggggaggagttccacggcggcaagtgcatcatcacggtgggcgcgtgggcgagcaag 423
              ||||| |||| |||||||||||  |||||| || | ||||||||||| | | ||||||||
Sbjct: 102693 agcggcgaggtgttccacggcgctaagtgcgtcgtgacggtgggcgcctagacgagcaag 102634

                   
Query: 424    ctggt 428
              |||||
Sbjct: 102633 ctggt 102629
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>emb|AL713944.3|CNS07YPN Oryza sativa chromosome 12, . BAC OJ1116_G12 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 152862

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 399    cacggtgggcgcgtgggcgagcaagctggtgaagtcggtcaccggcg 445
              |||||||||||| | | ||||||||||||| ||||| ||| ||||||
Sbjct: 132538 cacggtgggcgcctagacgagcaagctggtcaagtccgtcgccggcg 132492
to top
>gb|AE005903.1| Caulobacter crescentus CB15 section 229 of 359 of the complete genome
          Length = 11684

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 99   ggccttcgtcgccgccatcgcc 120
            ||||||||||||||||||||||
Sbjct: 1117 ggccttcgtcgccgccatcgcc 1096
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 26      acgccgagcgcgacgccggcta 47
               ||||||||||||||||||||||
Sbjct: 2963367 acgccgagcgcgacgccggcta 2963388
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 108     cgccgccatcgccaacggcggcgcc 132
               |||||||||||||||||||| ||||
Sbjct: 3019819 cgccgccatcgccaacggcgacgcc 3019843



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 434     cggtcaccggcgccgacctg 453
               ||||||||||||||||||||
Sbjct: 1555208 cggtcaccggcgccgacctg 1555227
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>emb|BX248343.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 10/14
          Length = 307550

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 108    cgccgccatcgccaacggcggcgcc 132
              |||||||||||||||||||| ||||
Sbjct: 164018 cgccgccatcgccaacggcgacgcc 164042
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>emb|AJ811516.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-108
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811514.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-102
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811513.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-95
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811512.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-94
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811511.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-93
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811510.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-91A
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811508.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-83
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811506.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-78
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811504.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-66
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811503.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-65
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811501.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-62A
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811500.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-62
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811499.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-60
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811498.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-58
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811496.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-50
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811495.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-48
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811494.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-45
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811490.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-39
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811488.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-37
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811485.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-31
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811483.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-24
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>emb|AJ811481.1| Uncultured bacterium partial nirS gene for putative dissimilatory
           nitrite reductase, clone AC100-17
          Length = 839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 629 cgacgccggctacaccgtgct 649
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 114     catcgccaacggcggcgccagcgagctcg 142
               |||||||| ||||||||||| ||||||||
Sbjct: 1602797 catcgccaccggcggcgccaccgagctcg 1602825
to top
>emb|X98350.1|GAHBC G.aeglefinus mRNA for haemoglobin beta-chain
          Length = 438

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 272 tcgccgccaagatgggcgccg 292
           |||||||||||||||||||||
Sbjct: 341 tcgccgccaagatgggcgccg 361
to top
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 91     gacgggccggccttcgtcgccgcca 115
              ||||| |||||||||||||||||||
Sbjct: 444191 gacggcccggccttcgtcgccgcca 444215
to top
>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13
          Length = 346051

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 108    cgccgccatcgccaacggcggcgcc 132
              |||||||||||||||||||| ||||
Sbjct: 251846 cgccgccatcgccaacggcgacgcc 251870
to top
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 96     gccggccttcgtcgccgccat 116
              |||||||||||||||||||||
Sbjct: 134149 gccggccttcgtcgccgccat 134129
to top
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 25     gacgccgagcgcgacgccggc 45
              |||||||||||||||||||||
Sbjct: 134950 gacgccgagcgcgacgccggc 134930
to top
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 96     gccggccttcgtcgccgccat 116
              |||||||||||||||||||||
Sbjct: 246519 gccggccttcgtcgccgccat 246499
to top
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 25    gacgccgagcgcgacgccggc 45
             |||||||||||||||||||||
Sbjct: 57310 gacgccgagcgcgacgccggc 57290
to top
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 96     gccggccttcgtcgccgccat 116
              |||||||||||||||||||||
Sbjct: 231177 gccggccttcgtcgccgccat 231157
to top
>emb|AJ440494.1|IBA440494 Pseudomonas sp. BA2.5 partial nirS gene for nitrite reductase,
           isolate BA2.5
          Length = 830

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 36  cgacgccggctacaccgtgct 56
           |||||||||||||||||||||
Sbjct: 625 cgacgccggctacaccgtgct 645
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 111    cgccatcgccaacggcggcgc 131
              |||||||||||||||||||||
Sbjct: 545549 cgccatcgccaacggcggcgc 545569



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    cttcgtcgccgccatcgcca 121
              ||||||||||||||||||||
Sbjct: 318756 cttcgtcgccgccatcgcca 318775
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 200    ggtgggccgcggcgaccagcgggcc 224
              |||| ||||||||||||||||||||
Sbjct: 383211 ggtgcgccgcggcgaccagcgggcc 383187



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 111     cgccatcgccaacggcggcg 130
               ||||||||||||||||||||
Sbjct: 1289702 cgccatcgccaacggcggcg 1289721



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 93     cgggccggccttcgtcgccgccatcgcc 120
              |||||| || ||||||||||||||||||
Sbjct: 892709 cgggcccgcgttcgtcgccgccatcgcc 892682
to top
>emb|AJ628421.2| Micromonospora olivasterospora fortimicin biosynthesis gene cluster,
            strain DSM 43868
          Length = 47238

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 204  ggccgcggcgaccagcgggccggcc 228
            ||||||||||||||||||| |||||
Sbjct: 3285 ggccgcggcgaccagcgggacggcc 3261
to top
>ref|XM_474606.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 918

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 101 ccttcgtcgccgccatcgcc 120
           ||||||||||||||||||||
Sbjct: 835 ccttcgtcgccgccatcgcc 816
to top
>gb|AY023162.1| Oryza sativa microsatellite MRG5487 containing (GCG)X8, genomic
           sequence
          Length = 224

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 ccttcgtcgccgccatcgcc 120
           ||||||||||||||||||||
Sbjct: 8   ccttcgtcgccgccatcgcc 27
to top
>gb|AY632751.1| Mycobacterium avium esterase (lipL) gene, complete cds
          Length = 1287

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 cgccatcgccaacggcggcg 130
           ||||||||||||||||||||
Sbjct: 888 cgccatcgccaacggcggcg 907
to top
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 24      cgacgccgagcgcgacgccg 43
               ||||||||||||||||||||
Sbjct: 2352202 cgacgccgagcgcgacgccg 2352221
to top
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    gccttcgtcgccgccatcgc 119
              ||||||||||||||||||||
Sbjct: 247271 gccttcgtcgccgccatcgc 247252
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     cgacgccgagcgcgacgccg 43
              ||||||||||||||||||||
Sbjct: 392511 cgacgccgagcgcgacgccg 392530
to top
>ref|XM_983991.1| PREDICTED: Mus musculus SRY-box containing gene 30 (Sox30), mRNA
          Length = 2196

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 cggaggggtgggccgcggcg 213
           ||||||||||||||||||||
Sbjct: 300 cggaggggtgggccgcggcg 281
to top
>ref|XM_751870.1| Ustilago maydis 521 hypothetical protein (UM00816.1) partial mRNA
          Length = 1080

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 255 ggccatgttccaaacgctcgccgccaag 282
           ||||||| |||| |||||||||||||||
Sbjct: 186 ggccatgatccacacgctcgccgccaag 213
to top
>emb|AL158205.12| Human DNA sequence from clone RP11-177F4 on chromosome 9 Contains a
            CpG island, complete sequence
          Length = 68171

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 322  gtcgccaggcaagaaggaaa 341
            ||||||||||||||||||||
Sbjct: 5458 gtcgccaggcaagaaggaaa 5477
to top
>emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome; segment 5/13
          Length = 348264

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 434    cggtcaccggcgccgacctg 453
              ||||||||||||||||||||
Sbjct: 172307 cggtcaccggcgccgacctg 172326
to top
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 437    tcaccggcgccgacctgccg 456
              ||||||||||||||||||||
Sbjct: 248948 tcaccggcgccgacctgccg 248929
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     cgacgccgagcgcgacgccg 43
              ||||||||||||||||||||
Sbjct: 202235 cgacgccgagcgcgacgccg 202254
to top
>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 5/14
          Length = 299450

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 434    cggtcaccggcgccgacctg 453
              ||||||||||||||||||||
Sbjct: 237429 cggtcaccggcgccgacctg 237448
to top
>emb|AL663013.4|OSJN00214 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06,
             complete sequence
          Length = 129608

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   ccttcgtcgccgccatcgcc 120
             ||||||||||||||||||||
Sbjct: 37042 ccttcgtcgccgccatcgcc 37061
to top
>emb|AJ576039.1|GWE576039 Gordonia westfalica strain DSM44215T plasmid pKB1 complete genome
          Length = 101016

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 97    ccggccttcgtcgccgccatcgcc 120
             |||||||||||||| |||||||||
Sbjct: 25070 ccggccttcgtcgcagccatcgcc 25093
to top
>emb|AL645948.10| Mouse DNA sequence from clone RP23-298M7 on chromosome 11 Contains an H+
              transporting ATP synthase mitochondrial F0 complex subunit
              g (Atp5l) pseudogene, a ferritin light chain 1 (Ftl1)
              pseudogene, three novel genes, the gene for a novel ENTH
              domain containing protein, the 5' end of the Sox30 gene for
              SRY-box containing gene 30 and three Cpg islands, complete
              sequence
          Length = 207877

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    cggaggggtgggccgcggcg 213
              ||||||||||||||||||||
Sbjct: 204632 cggaggggtgggccgcggcg 204613
to top
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 23      acgacgccgagcgcgacgcc 42
               ||||||||||||||||||||
Sbjct: 1246290 acgacgccgagcgcgacgcc 1246271
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 101     ccttcgtcgccgccatcgcc 120
               ||||||||||||||||||||
Sbjct: 4646909 ccttcgtcgccgccatcgcc 4646928
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 104      tcgtcgccgccatcgccaac 123
                ||||||||||||||||||||
Sbjct: 28801657 tcgtcgccgccatcgccaac 28801638



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 104      tcgtcgccgccatcgccaac 123
                ||||||||||||||||||||
Sbjct: 28797481 tcgtcgccgccatcgccaac 28797500
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 95       ggccggccttcgtcgccgcc 114
                ||||||||||||||||||||
Sbjct: 14550841 ggccggccttcgtcgccgcc 14550822
to top
>gb|AF197466.1|AF197466 Pseudomonas fluorescens NirP (nirP), NirO (nirO), ATP/GTP binding
            protein (nirQ), cd1 nitrite reductase (nirS), and
            cytochrome c-551 (nirM) genes, complete cds
          Length = 3890

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   gacgccggctacaccgtgct 56
            ||||||||||||||||||||
Sbjct: 3280 gacgccggctacaccgtgct 3299
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 27      cgccgagcgcgacgccggct 46
               ||||||||||||||||||||
Sbjct: 4128940 cgccgagcgcgacgccggct 4128959
to top
>gb|AY005801.1| Mus musculus Sox-30 mRNA, complete cds
          Length = 3074

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 cggaggggtgggccgcggcg 213
           ||||||||||||||||||||
Sbjct: 85  cggaggggtgggccgcggcg 66
to top
>gb|AC158486.2| Capitella capitata clone JGIAUTO-1A14, complete sequence
          Length = 34880

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   gacgtcgccaggcaagaagg 338
             ||||||||||||||||||||
Sbjct: 31404 gacgtcgccaggcaagaagg 31385
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 429     gaagtcggtcaccggcgccg 448
               ||||||||||||||||||||
Sbjct: 4438231 gaagtcggtcaccggcgccg 4438212
to top
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0028E05
          Length = 157631

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 104    tcgtcgccgccatcgccaac 123
              ||||||||||||||||||||
Sbjct: 109432 tcgtcgccgccatcgccaac 109413



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    tcgtcgccgccatcgccaac 123
              ||||||||||||||||||||
Sbjct: 105256 tcgtcgccgccatcgccaac 105275
to top
>dbj|AP005653.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0075E08
          Length = 130947

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ggccggccttcgtcgccgcc 114
             ||||||||||||||||||||
Sbjct: 54857 ggccggccttcgtcgccgcc 54838
to top
>gb|AF081810.1|AF081810 Lymantria dispar nucleopolyhedrovirus, complete genome
          Length = 161046

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 380   acggcggcaagtgcatcatc 399
             ||||||||||||||||||||
Sbjct: 27045 acggcggcaagtgcatcatc 27064
to top
>emb|AL773560.9| Pig DNA sequence from clone XX-514B12, complete sequence
          Length = 107413

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   cagggtgccggaggggtggg 205
             ||||||||||||||||||||
Sbjct: 90782 cagggtgccggaggggtggg 90801
to top
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 106     gtcgccgccatcgccaacggcggcgcca 133
               ||||| ||||||||||| ||||||||||
Sbjct: 1909010 gtcgcggccatcgccaaaggcggcgcca 1908983
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     cgacgccgagcgcgacgccg 43
              ||||||||||||||||||||
Sbjct: 186721 cgacgccgagcgcgacgccg 186740
to top
>ref|NM_173384.1| Mus musculus SRY-box containing gene 30 (Sox30), mRNA
          Length = 3074

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 cggaggggtgggccgcggcg 213
           ||||||||||||||||||||
Sbjct: 85  cggaggggtgggccgcggcg 66


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,747,612
Number of Sequences: 3902068
Number of extensions: 2747612
Number of successful extensions: 63721
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59836
Number of HSP's gapped (non-prelim): 3882
length of query: 487
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 465
effective length of database: 17,147,199,772
effective search space: 7973447893980
effective search space used: 7973447893980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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